BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0351.p (206 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IU00.1 D8IU00_HERSS 50S ribosomal protein L4 423 e-117 A6T3K3.1 RL4_JANMA 50S ribosomal protein L4 391 e-107 A4G9T7.1 RL4_HERAR 50S ribosomal protein L4 387 e-106 F1VU79.1 F1VU79_9BURK LSU ribosomal protein L4p (L1e) 367 e-100 E5APM1.1 E5APM1_BURRH 50S ribosomal protein L4 352 2e-95 C3X6H2.1 C3X6H2_OXAFO 50S ribosomal protein L4 348 2e-94 C6U021.1 C6U021_BURPS 50S ribosomal protein L4 348 2e-94 C5ZEK1.1 C5ZEK1_BURPS 50S ribosomal protein L4 348 2e-94 C5NFC4.1 C5NFC4_BURMA 50S ribosomal protein L4 348 2e-94 C4KWX3.1 C4KWX3_BURPS 50S ribosomal protein L4 348 2e-94 >D8IU00.1 D8IU00_HERSS 50S ribosomal protein L4 Length = 206 Score = 423 bits (1088), Expect = e-117, Method: Compositional matrix adjust. Identities = 206/206 (100%), Positives = 206/206 (100%) Query: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT Sbjct: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 Query: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA Sbjct: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180 Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206 DPVSLVYFKNVLITKPALAKIEELLA Sbjct: 181 DPVSLVYFKNVLITKPALAKIEELLA 206 >A6T3K3.1 RL4_JANMA 50S ribosomal protein L4 Length = 206 Score = 391 bits (1005), Expect = e-107, Method: Compositional matrix adjust. Identities = 186/206 (90%), Positives = 197/206 (95%) Query: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEV HTT Sbjct: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60 Query: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENF+HKVNKKMYRAGVCSILSQLARE Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGVCSILSQLARE 120 Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180 GRLSV+E +VEAPKTKLL+QKLKGMG++SVLVITDSLDE LLLASRNLP VL+ EPR A Sbjct: 121 GRLSVIENLSVEAPKTKLLSQKLKGMGLDSVLVITDSLDENLLLASRNLPNVLICEPRHA 180 Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206 DPVSLV++K +LITK ALAKIEE+LA Sbjct: 181 DPVSLVFYKKILITKLALAKIEEMLA 206 >A4G9T7.1 RL4_HERAR 50S ribosomal protein L4 Length = 206 Score = 387 bits (994), Expect = e-106, Method: Compositional matrix adjust. Identities = 182/206 (88%), Positives = 197/206 (95%) Query: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 MELKLLNDQGQ++SNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEV HTT Sbjct: 1 MELKLLNDQGQSSSNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVHHTT 60 Query: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENF+HKVNKKMYRAG+CSILSQLARE Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMYRAGLCSILSQLARE 120 Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180 GRLSV+E +V+APKTKLL+QKLKGMG++SVLVITDSLDE LLLASRNLP VL+ EPR A Sbjct: 121 GRLSVIESLSVDAPKTKLLSQKLKGMGLDSVLVITDSLDENLLLASRNLPNVLICEPRHA 180 Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206 DPVSLV++K +LITK ALAKIEE+LA Sbjct: 181 DPVSLVFYKKILITKLALAKIEEMLA 206 >F1VU79.1 F1VU79_9BURK LSU ribosomal protein L4p (L1e) Length = 207 Score = 367 bits (943), Expect = e-100, Method: Compositional matrix adjust. Identities = 173/207 (83%), Positives = 194/207 (93%), Gaps = 1/207 (0%) Query: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 MELKLLNDQGQAAS+VAAPDTIFGRDYNEALIHQVVVAYQANARSGN KQK+REEV HTT Sbjct: 1 MELKLLNDQGQAASDVAAPDTIFGRDYNEALIHQVVVAYQANARSGNSKQKNREEVHHTT 60 Query: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPD+N++HKVNKKMYRAG+CSILSQLARE Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDQNYSHKVNKKMYRAGLCSILSQLARE 120 Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMG-MESVLVITDSLDEKLLLASRNLPGVLVVEPRQ 179 GR+SV+EE ++EAPKTKLL+ KLK MG +ESVL+I D++DE L LASRNLP VL+VEPR Sbjct: 121 GRISVIEEISLEAPKTKLLSSKLKEMGLLESVLIIADTIDENLALASRNLPHVLIVEPRH 180 Query: 180 ADPVSLVYFKNVLITKPALAKIEELLA 206 ADPVSLV++K ++ITK ALAKIEE+LA Sbjct: 181 ADPVSLVFYKKIVITKAALAKIEEMLA 207 >E5APM1.1 E5APM1_BURRH 50S ribosomal protein L4 Length = 208 Score = 352 bits (904), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 166/206 (80%), Positives = 185/206 (89%) Query: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 MELKLLNDQGQ ++ V A D +FGRDYNEALIHQ+VVAYQANARSGNR QKDRE+V HTT Sbjct: 3 MELKLLNDQGQESAGVNASDIVFGRDYNEALIHQIVVAYQANARSGNRAQKDREQVKHTT 62 Query: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSP+ENF KVNKKM+RAGVCSILSQLARE Sbjct: 63 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPEENFGQKVNKKMFRAGVCSILSQLARE 122 Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180 GRLSVVE+ ++APKTKLLA K K MG+ESVLVITD++DE L LASRNLP V VVEPR A Sbjct: 123 GRLSVVEDIKLDAPKTKLLAAKFKAMGLESVLVITDTVDENLYLASRNLPHVAVVEPRYA 182 Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206 DP+SL+YFK VL+TK A+A+IEELL+ Sbjct: 183 DPLSLIYFKKVLVTKAAVAQIEELLS 208 >C3X6H2.1 C3X6H2_OXAFO 50S ribosomal protein L4 Length = 206 Score = 348 bits (894), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 165/206 (80%), Positives = 182/206 (88%) Query: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 MELKLLN QA V APDTIFGR+YNEALIHQ+VVA+QANAR+G+R+QK RE V+HTT Sbjct: 1 MELKLLNGSDQAVGKVEAPDTIFGREYNEALIHQIVVAFQANARTGDRQQKSRETVAHTT 60 Query: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 KKPWRQKGTGRARAGMSSSPLWRGGGR FPN+PDENF+HKVNKKMYRAGVCSILSQLARE Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRAFPNTPDENFSHKVNKKMYRAGVCSILSQLARE 120 Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180 RL+V+E A++APKTK+LAQKLKG G SVLVITD DE L LASRNLP VLVVEP QA Sbjct: 121 DRLTVIEGLAIDAPKTKMLAQKLKGFGFNSVLVITDVFDENLYLASRNLPNVLVVEPHQA 180 Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206 DPVSLV+FK+VLITK AL KIEE+LA Sbjct: 181 DPVSLVHFKDVLITKAALGKIEEMLA 206 >C6U021.1 C6U021_BURPS 50S ribosomal protein L4 Length = 206 Score = 348 bits (893), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 164/206 (79%), Positives = 182/206 (88%) Query: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 MELKLLN GQ + V A D +FGRDYNEALIHQVVVAYQANAR GNR QKDRE+V HTT Sbjct: 1 MELKLLNSNGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENF+HKVNKKM+RAG+CSI SQLARE Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180 GRLSVVE+ +EAPKTKLLA K K MG++SVLVITD++DE L LASRNLP V VVEPR A Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLDSVLVITDTVDENLYLASRNLPHVAVVEPRYA 180 Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206 DP+SL+YFK VL+TK A+A+IEELL+ Sbjct: 181 DPLSLIYFKKVLVTKAAVAQIEELLS 206 >C5ZEK1.1 C5ZEK1_BURPS 50S ribosomal protein L4 Length = 206 Score = 348 bits (893), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 164/206 (79%), Positives = 182/206 (88%) Query: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 MELKLLN GQ + V A D +FGRDYNEALIHQVVVAYQANAR GNR QKDRE+V HTT Sbjct: 1 MELKLLNSNGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENF+HKVNKKM+RAG+CSI SQLARE Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180 GRLSVVE+ +EAPKTKLLA K K MG++SVLVITD++DE L LASRNLP V VVEPR A Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLDSVLVITDTVDENLYLASRNLPHVAVVEPRYA 180 Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206 DP+SL+YFK VL+TK A+A+IEELL+ Sbjct: 181 DPLSLIYFKKVLVTKAAVAQIEELLS 206 >C5NFC4.1 C5NFC4_BURMA 50S ribosomal protein L4 Length = 206 Score = 348 bits (893), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 164/206 (79%), Positives = 182/206 (88%) Query: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 MELKLLN GQ + V A D +FGRDYNEALIHQVVVAYQANAR GNR QKDRE+V HTT Sbjct: 1 MELKLLNSNGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENF+HKVNKKM+RAG+CSI SQLARE Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180 GRLSVVE+ +EAPKTKLLA K K MG++SVLVITD++DE L LASRNLP V VVEPR A Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLDSVLVITDTVDENLYLASRNLPHVAVVEPRYA 180 Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206 DP+SL+YFK VL+TK A+A+IEELL+ Sbjct: 181 DPLSLIYFKKVLVTKAAVAQIEELLS 206 >C4KWX3.1 C4KWX3_BURPS 50S ribosomal protein L4 Length = 206 Score = 348 bits (893), Expect = 2e-94, Method: Compositional matrix adjust. Identities = 164/206 (79%), Positives = 182/206 (88%) Query: 1 MELKLLNDQGQAASNVAAPDTIFGRDYNEALIHQVVVAYQANARSGNRKQKDREEVSHTT 60 MELKLLN GQ + V A D +FGRDYNEALIHQVVVAYQANAR GNR QKDRE+V HTT Sbjct: 1 MELKLLNSNGQEGAVVNASDVVFGRDYNEALIHQVVVAYQANARQGNRAQKDREQVKHTT 60 Query: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFTHKVNKKMYRAGVCSILSQLARE 120 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENF+HKVNKKM+RAG+CSI SQLARE Sbjct: 61 KKPWRQKGTGRARAGMSSSPLWRGGGRIFPNSPDENFSHKVNKKMHRAGLCSIFSQLARE 120 Query: 121 GRLSVVEEFAVEAPKTKLLAQKLKGMGMESVLVITDSLDEKLLLASRNLPGVLVVEPRQA 180 GRLSVVE+ +EAPKTKLLA K K MG++SVLVITD++DE L LASRNLP V VVEPR A Sbjct: 121 GRLSVVEDIVLEAPKTKLLADKFKAMGLDSVLVITDTVDENLYLASRNLPHVAVVEPRYA 180 Query: 181 DPVSLVYFKNVLITKPALAKIEELLA 206 DP+SL+YFK VL+TK A+A+IEELL+ Sbjct: 181 DPLSLIYFKKVLVTKAAVAQIEELLS 206