BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0346.p (272 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IUS7.1 D8IUS7_HERSS 30S ribosomal protein S3 549 e-154 A6T3J8.1 RS3_JANMA 30S ribosomal protein S3 459 e-127 A4G9T2.1 RS3_HERAR 30S ribosomal protein S3 447 e-124 C3XCP8.1 C3XCP8_OXAFO 30S ribosomal protein S3 439 e-121 C3X6H7.1 C3X6H7_OXAFO 30S ribosomal protein S3 430 e-119 D8NWP3.1 D8NWP3_RALSO 30S ribosomal protein S3 5 397 e-109 B2UEL3.1 RS3_RALPJ 30S ribosomal protein S3 395 e-108 C6BFU5.1 C6BFU5_RALP1 30S ribosomal protein S3 395 e-108 E2T470.1 E2T470_9RALS 30S ribosomal protein S3 395 e-108 B5RWW4.1 B5RWW4_RALSO 30S ribosomal protein S3 2 395 e-108 >D8IUS7.1 D8IUS7_HERSS 30S ribosomal protein S3 Length = 272 Score = 549 bits (1415), Expect = e-154, Method: Compositional matrix adjust. Identities = 272/272 (100%), Positives = 272/272 (100%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA Sbjct: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRRGPRRDDGKPGARP 240 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRRGPRRDDGKPGARP Sbjct: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRRGPRRDDGKPGARP 240 Query: 241 RSKTGAPGAGAKRGGGRPQAADAGVSAEKAGE 272 RSKTGAPGAGAKRGGGRPQAADAGVSAEKAGE Sbjct: 241 RSKTGAPGAGAKRGGGRPQAADAGVSAEKAGE 272 >A6T3J8.1 RS3_JANMA 30S ribosomal protein S3 Length = 283 Score = 459 bits (1181), Expect = e-127, Method: Compositional matrix adjust. Identities = 236/286 (82%), Positives = 245/286 (85%), Gaps = 17/286 (5%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV+RNW SRWYAGN+NFA MLNEDLKVRAYLK KLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVSRNWASRWYAGNSNFATMLNEDLKVRAYLKTKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIEVLKSAL K+MGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALTKMMGVPVHVNIEEIRKPETDAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIAR EWYREGRVPLHTLRA Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRRGPRRDDGKPGARP 240 DIDYGFGEAETTYGIIG+KVWVYKGDRLANGE+PV+ +DDKKRRGPRRDDGKP RP Sbjct: 181 DIDYGFGEAETTYGIIGIKVWVYKGDRLANGEAPVIDVASDDDKKRRGPRRDDGKPSGRP 240 Query: 241 RS--------------KTGAPGAGAKRGGGRPQAADAGVSAEKAGE 272 R+ A AK+ G A DA VSAEKAGE Sbjct: 241 RAPRPEGQPGAAAPGSAPAAKRVRAKKPDG---AVDAAVSAEKAGE 283 >A4G9T2.1 RS3_HERAR 30S ribosomal protein S3 Length = 283 Score = 447 bits (1150), Expect = e-124, Method: Compositional matrix adjust. Identities = 231/284 (81%), Positives = 243/284 (85%), Gaps = 13/284 (4%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRL+VTRNW SRWYAGN+NFA MLNEDLKVRAYLK KLKNASVGRV+IERP Sbjct: 1 MGQKIHPTGFRLSVTRNWASRWYAGNSNFATMLNEDLKVRAYLKTKLKNASVGRVIIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIEVLKSAL K+MGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALTKMMGVPVHVNIEEIRKPETDAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIAR EWYREGRVPLHTLRA Sbjct: 121 AQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRRGPRRDDGKPGARP 240 +IDYGFGEAETTYGIIG+KVWVYKGDRL +GE PV + + EDD KRRGPRRDDGKP +RP Sbjct: 181 EIDYGFGEAETTYGIIGIKVWVYKGDRLPSGEPPVDLTK-EDDTKRRGPRRDDGKPSSRP 239 Query: 241 RS----------KTGAPGAGAKR-GGGRPQAA-DAGVSAEKAGE 272 R+ AKR +P AA D V AEKAGE Sbjct: 240 RTARPEGQPGAAAAPGAAPAAKRVRAKKPDAAVDGAVPAEKAGE 283 >C3XCP8.1 C3XCP8_OXAFO 30S ribosomal protein S3 Length = 282 Score = 439 bits (1129), Expect = e-121, Method: Compositional matrix adjust. Identities = 217/259 (83%), Positives = 229/259 (88%), Gaps = 6/259 (2%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV RNW SRWYAGN NFA MLNEDLK RAYLKKKLKNASVG+VVIERP Sbjct: 1 MGQKIHPTGFRLAVARNWSSRWYAGNTNFAGMLNEDLKARAYLKKKLKNASVGQVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNAR TIYSSRPGVVIGKKGEDIEVLKS L+K+MGVPVHVNIEE+RKPE AQLIADSI Sbjct: 61 AKNARFTIYSSRPGVVIGKKGEDIEVLKSDLSKIMGVPVHVNIEEVRKPEIHAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLEKRIMFRRAM+RAMQNAMRLGA GIKIMSSGRLNGIEIAR EWYREGRVPLHTLRA Sbjct: 121 TQQLEKRIMFRRAMRRAMQNAMRLGAVGIKIMSSGRLNGIEIARKEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRRGPRRDDGKPGARP 240 DIDYGF EA+TTYGIIGVKVWVYKGDRL NGE+P + E+DKKRRGPRR+DG+PG R Sbjct: 181 DIDYGFSEAQTTYGIIGVKVWVYKGDRLENGEAPKIEAPAEEDKKRRGPRREDGRPGGRQ 240 Query: 241 RSK------TGAPGAGAKR 253 R K + AP AGAKR Sbjct: 241 RVKKADGAASEAPSAGAKR 259 >C3X6H7.1 C3X6H7_OXAFO 30S ribosomal protein S3 Length = 282 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 221/282 (78%), Positives = 234/282 (82%), Gaps = 10/282 (3%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV RNW SRWYAGN NFA MLNEDLK RAYLKKKLKNASVG+VVIERP Sbjct: 1 MGQKIHPTGFRLAVARNWSSRWYAGNTNFAGMLNEDLKARAYLKKKLKNASVGQVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNAR TIYSSRPGVVIGKKGEDIEVLKS L+++MGVPVHVNIEE+RKPE AQLIADSI Sbjct: 61 AKNARFTIYSSRPGVVIGKKGEDIEVLKSDLSRIMGVPVHVNIEEVRKPEIHAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLEKRIMFRRAM+RAMQNAMRLGA GIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA Sbjct: 121 TQQLEKRIMFRRAMRRAMQNAMRLGAVGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKRRGPRRDDGKPG--- 237 DIDYGF EA+TTYGIIGVKVWVYKGDRL NGE+P + E+DKKRRG RR+DG+PG Sbjct: 181 DIDYGFSEAQTTYGIIGVKVWVYKGDRLENGEAPKIETPNEEDKKRRGARREDGRPGRQR 240 Query: 238 ARPRSKTGA---PGAGAKRGGGR-PQAADAGVS---AEKAGE 272 R GA P GAKR R P+ A E AGE Sbjct: 241 VRKSESAGASETPSTGAKRVRARKPENAATATENSPVETAGE 282 >D8NWP3.1 D8NWP3_RALSO 30S ribosomal protein S3 5 Length = 264 Score = 397 bits (1020), Expect = e-109, Method: Compositional matrix adjust. Identities = 192/226 (84%), Positives = 207/226 (91%), Gaps = 1/226 (0%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV+RNW SRWYA N FA ML ED++VR +LKKKLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIE+LK+ L + MGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLE+RIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKR 226 DIDYGF EAETTYGIIGVKVWVYKGD L E+PV V EP++++++ Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNEAPV-VEEPQEERRK 225 >B2UEL3.1 RS3_RALPJ 30S ribosomal protein S3 Length = 262 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/226 (84%), Positives = 207/226 (91%), Gaps = 1/226 (0%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV+RNW SRWYA N FA ML ED++VR +LKKKLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIE+LK+ L + MGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLE+RIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKR 226 DIDYGF EAETTYGIIGVKVWVYKGD L ++PV V EP++++++ Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPV-VEEPQEERRK 225 >C6BFU5.1 C6BFU5_RALP1 30S ribosomal protein S3 Length = 264 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/226 (84%), Positives = 207/226 (91%), Gaps = 1/226 (0%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV+RNW SRWYA N FA ML ED++VR +LKKKLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIE+LK+ L + MGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLE+RIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKR 226 DIDYGF EAETTYGIIGVKVWVYKGD L ++PV V EP++++++ Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPV-VEEPQEERRK 225 >E2T470.1 E2T470_9RALS 30S ribosomal protein S3 Length = 262 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/226 (84%), Positives = 207/226 (91%), Gaps = 1/226 (0%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV+RNW SRWYA N FA ML ED++VR +LKKKLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIE+LK+ L + MGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLE+RIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKR 226 DIDYGF EAETTYGIIGVKVWVYKGD L ++PV V EP++++++ Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPV-VEEPQEERRK 225 >B5RWW4.1 B5RWW4_RALSO 30S ribosomal protein S3 2 Length = 264 Score = 395 bits (1016), Expect = e-108, Method: Compositional matrix adjust. Identities = 191/226 (84%), Positives = 207/226 (91%), Gaps = 1/226 (0%) Query: 1 MGQKIHPTGFRLAVTRNWGSRWYAGNNNFADMLNEDLKVRAYLKKKLKNASVGRVVIERP 60 MGQKIHPTGFRLAV+RNW SRWYA N FA ML ED++VR +LKKKLKNASVGRVVIERP Sbjct: 1 MGQKIHPTGFRLAVSRNWASRWYASNTQFAGMLKEDIEVREFLKKKLKNASVGRVVIERP 60 Query: 61 AKNARITIYSSRPGVVIGKKGEDIEVLKSALAKLMGVPVHVNIEEIRKPEADAQLIADSI 120 AKNARITIYSSRPGVVIGKKGEDIE+LK+ L + MGVPVHVNIEEIRKPE DAQLIADSI Sbjct: 61 AKNARITIYSSRPGVVIGKKGEDIELLKAELQRRMGVPVHVNIEEIRKPEVDAQLIADSI 120 Query: 121 CQQLEKRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 QQLE+RIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA Sbjct: 121 TQQLERRIMFRRAMKRAMQNAMRLGAQGIKIMSSGRLNGIEIARTEWYREGRVPLHTLRA 180 Query: 181 DIDYGFGEAETTYGIIGVKVWVYKGDRLANGESPVLVGEPEDDKKR 226 DIDYGF EAETTYGIIGVKVWVYKGD L ++PV V EP++++++ Sbjct: 181 DIDYGFSEAETTYGIIGVKVWVYKGDHLGRNDAPV-VEEPQEERRK 225