BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0327.p (325 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IUU7.1 D8IUU7_HERSS DNA-directed RNA polymerase subunit alpha ... 654 0.0 A2RQ11.1 A2RQ11_HERSE DNA-directed RNA polymerase subunit alpha ... 654 0.0 F1VZY4.1 F1VZY4_9BURK DNA-directed RNA polymerase alpha subunit 628 e-178 A4G9R3.1 RPOA_HERAR DNA-directed RNA polymerase subunit alpha EC... 626 e-177 A6T3H8.1 RPOA_JANMA DNA-directed RNA polymerase subunit alpha EC... 623 e-177 E8YH75.1 E8YH75_9BURK DNA-directed RNA polymerase, alpha subunit 590 e-166 D5NSE9.1 D5NSE9_9BURK DNA-directed RNA polymerase subunit alpha ... 590 e-166 B1G8N1.1 B1G8N1_9BURK DNA-directed RNA polymerase subunit alpha ... 590 e-166 Q13TJ6.1 RPOA_BURXL DNA-directed RNA polymerase subunit alpha EC... 590 e-166 B2T725.1 RPOA_BURPP DNA-directed RNA polymerase subunit alpha EC... 590 e-166 >D8IUU7.1 D8IUU7_HERSS DNA-directed RNA polymerase subunit alpha EC=2.7.7.6 Length = 325 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/325 (100%), Positives = 325/325 (100%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS Sbjct: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP Sbjct: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI Sbjct: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGLEK Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 >A2RQ11.1 A2RQ11_HERSE DNA-directed RNA polymerase subunit alpha EC=2.7.7.6 Length = 325 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 325/325 (100%), Positives = 325/325 (100%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS Sbjct: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP Sbjct: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI Sbjct: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGLEK Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 >F1VZY4.1 F1VZY4_9BURK DNA-directed RNA polymerase alpha subunit Length = 325 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 310/325 (95%), Positives = 318/325 (97%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQNSLLKPRIIEVETL GHAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVETLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVD+LLNLKGVVFKLHNRDEVTLTLKK+GEGAVLASDIDLPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDMLLNLKGVVFKLHNRDEVTLTLKKDGEGAVLASDIDLPHDVEL 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 INPDHVIA+LT GGKLDMQIKVEKGRGYVPGNVRRL+ED NKTIGRIILDASFSPVRRVS Sbjct: 121 INPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLAEDANKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 Y+VESARVEQRTDLDKLV+NIETNGVI+PEEAIRQSARVLVDQLNVFAALEGTEA AEAP Sbjct: 181 YSVESARVEQRTDLDKLVINIETNGVISPEEAIRQSARVLVDQLNVFAALEGTEAAAEAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAP VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI Sbjct: 241 SRAPSVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGLEK Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 >A4G9R3.1 RPOA_HERAR DNA-directed RNA polymerase subunit alpha EC=2.7.7.6 Length = 325 Score = 626 bits (1614), Expect = e-177, Method: Compositional matrix adjust. Identities = 310/325 (95%), Positives = 318/325 (97%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQNSLLKPRIIEVE L GHAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVEVLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVD+LLNLKGVVFKLHNRD+VTLTLKKEGEGAVLASDI+LPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDLLLNLKGVVFKLHNRDDVTLTLKKEGEGAVLASDIELPHDVEL 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 +NPDHVIA+LT GGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS Sbjct: 121 VNPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLV+NIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEA A+AP Sbjct: 181 YAVESARVEQRTDLDKLVINIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEAPADAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAP VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI Sbjct: 241 SRAPAVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGLEK Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 >A6T3H8.1 RPOA_JANMA DNA-directed RNA polymerase subunit alpha EC=2.7.7.6 Length = 325 Score = 623 bits (1607), Expect = e-177, Method: Compositional matrix adjust. Identities = 308/325 (94%), Positives = 318/325 (97%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQNSLLKPRIIEVE L GHAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQNSLLKPRIIEVEVLGAGHAKVVMEPFERGYGHTLGNALRRVLLSSMVGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYSSLDGVQEDVVD+LLNLKGVVFKLHNRD+VTLTLKK+GEGAVLASDI+LPHDVEL Sbjct: 61 VVHEYSSLDGVQEDVVDLLLNLKGVVFKLHNRDDVTLTLKKDGEGAVLASDIELPHDVEL 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 +NPDHVIA+LT GGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS Sbjct: 121 VNPDHVIAHLTAGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLV+NIETNGVI+PEEAIRQSARVLVDQLNVFAALEGTEA A+AP Sbjct: 181 YAVESARVEQRTDLDKLVINIETNGVISPEEAIRQSARVLVDQLNVFAALEGTEAPADAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAP VDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI Sbjct: 241 SRAPAVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGLEK Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 >E8YH75.1 E8YH75_9BURK DNA-directed RNA polymerase, alpha subunit Length = 325 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 287/325 (88%), Positives = 309/325 (95%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQ SLLKP+II VE+L HAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQTSLLKPKIIAVESLGESHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYS+LDGVQEDVV++LLNLKGVVFKLHNRDEVT+TL+KEGEG V A DI+L HD E+ Sbjct: 61 VVHEYSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEV 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 INPDHVIA+L+ GGKLD+QIKVEKGRGYVPGNVRR E++ K IGRI+LDASFSPVRRVS Sbjct: 121 INPDHVIAHLSKGGKLDVQIKVEKGRGYVPGNVRRYGEESAKIIGRIVLDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLVMNIETNGVI+PEEAIRQSAR+LVDQL+VFAALEGTEATAEAP Sbjct: 181 YAVESARVEQRTDLDKLVMNIETNGVISPEEAIRQSARILVDQLSVFAALEGTEATAEAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAPQ+DPILLRPVDDLELTVRSANCLKAENIYYIGDLIQR+ENELLKTPNLGRKSLNEI Sbjct: 241 SRAPQIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGL+K Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLDK 325 >D5NSE9.1 D5NSE9_9BURK DNA-directed RNA polymerase subunit alpha EC=2.7.7.6 Length = 325 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 287/325 (88%), Positives = 309/325 (95%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQ SLLKP+II VE+L HAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQTSLLKPKIIAVESLGESHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYS+LDGVQEDVV++LLNLKGVVFKLHNRDEVT+TL+KEGEG V A DI+L HD E+ Sbjct: 61 VVHEYSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEV 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 INPDHVIA+L+ GGKLD+QIKVEKGRGYVPGNVRR E++ K IGRI+LDASFSPVRRVS Sbjct: 121 INPDHVIAHLSKGGKLDVQIKVEKGRGYVPGNVRRYGEESAKIIGRIVLDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLVMNIETNGVI+PEEAIRQSAR+LVDQL+VFAALEGTEATAEAP Sbjct: 181 YAVESARVEQRTDLDKLVMNIETNGVISPEEAIRQSARILVDQLSVFAALEGTEATAEAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAPQ+DPILLRPVDDLELTVRSANCLKAENIYYIGDLIQR+ENELLKTPNLGRKSLNEI Sbjct: 241 SRAPQIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGL+K Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLDK 325 >B1G8N1.1 B1G8N1_9BURK DNA-directed RNA polymerase subunit alpha EC=2.7.7.6 Length = 325 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 287/325 (88%), Positives = 309/325 (95%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQ SLLKP+II VE+L HAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQTSLLKPKIIAVESLGESHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYS+LDGVQEDVV++LLNLKGVVFKLHNRDEVT+TL+KEGEG V A DI+L HD E+ Sbjct: 61 VVHEYSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEV 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 INPDHVIA+L+ GGKLD+QIKVEKGRGYVPGNVRR E++ K IGRI+LDASFSPVRRVS Sbjct: 121 INPDHVIAHLSKGGKLDVQIKVEKGRGYVPGNVRRYGEESAKIIGRIVLDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLVMNIETNGVI+PEEAIRQSAR+LVDQL+VFAALEGTEATAEAP Sbjct: 181 YAVESARVEQRTDLDKLVMNIETNGVISPEEAIRQSARILVDQLSVFAALEGTEATAEAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAPQ+DPILLRPVDDLELTVRSANCLKAENIYYIGDLIQR+ENELLKTPNLGRKSLNEI Sbjct: 241 SRAPQIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGL+K Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLDK 325 >Q13TJ6.1 RPOA_BURXL DNA-directed RNA polymerase subunit alpha EC=2.7.7.6 Length = 325 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 287/325 (88%), Positives = 309/325 (95%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQ SLLKP+II VE+L HAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQTSLLKPKIIAVESLGESHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYS+LDGVQEDVV++LLNLKGVVFKLHNRDEVT+TL+KEGEG V A DI+L HD E+ Sbjct: 61 VVHEYSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEV 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 INPDHVIA+L+ GGKLD+QIKVEKGRGYVPGNVRR E++ K IGRI+LDASFSPVRRVS Sbjct: 121 INPDHVIAHLSKGGKLDVQIKVEKGRGYVPGNVRRYGEESAKIIGRIVLDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLVMNIETNGVI+PEEAIRQSAR+LVDQL+VFAALEGTEATAEAP Sbjct: 181 YAVESARVEQRTDLDKLVMNIETNGVISPEEAIRQSARILVDQLSVFAALEGTEATAEAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAPQ+DPILLRPVDDLELTVRSANCLKAENIYYIGDLIQR+ENELLKTPNLGRKSLNEI Sbjct: 241 SRAPQIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGL+K Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLDK 325 >B2T725.1 RPOA_BURPP DNA-directed RNA polymerase subunit alpha EC=2.7.7.6 Length = 325 Score = 590 bits (1520), Expect = e-166, Method: Compositional matrix adjust. Identities = 287/325 (88%), Positives = 309/325 (95%) Query: 1 MQNSLLKPRIIEVETLAPGHAKVVMEPFERGYGHTLGNALRRVLLSTMSGYAPTEVTIAG 60 MQ SLLKP+II VE+L HAKVVMEPFERGYGHTLGNALRRVLLS+M GYAPTEVTIAG Sbjct: 1 MQTSLLKPKIIAVESLGESHAKVVMEPFERGYGHTLGNALRRVLLSSMIGYAPTEVTIAG 60 Query: 61 VVHEYSSLDGVQEDVVDILLNLKGVVFKLHNRDEVTLTLKKEGEGAVLASDIDLPHDVEL 120 VVHEYS+LDGVQEDVV++LLNLKGVVFKLHNRDEVT+TL+KEGEG V A DI+L HD E+ Sbjct: 61 VVHEYSTLDGVQEDVVNLLLNLKGVVFKLHNRDEVTVTLRKEGEGVVTAGDIELAHDCEV 120 Query: 121 INPDHVIANLTGGGKLDMQIKVEKGRGYVPGNVRRLSEDTNKTIGRIILDASFSPVRRVS 180 INPDHVIA+L+ GGKLD+QIKVEKGRGYVPGNVRR E++ K IGRI+LDASFSPVRRVS Sbjct: 121 INPDHVIAHLSKGGKLDVQIKVEKGRGYVPGNVRRYGEESAKIIGRIVLDASFSPVRRVS 180 Query: 181 YAVESARVEQRTDLDKLVMNIETNGVITPEEAIRQSARVLVDQLNVFAALEGTEATAEAP 240 YAVESARVEQRTDLDKLVMNIETNGVI+PEEAIRQSAR+LVDQL+VFAALEGTEATAEAP Sbjct: 181 YAVESARVEQRTDLDKLVMNIETNGVISPEEAIRQSARILVDQLSVFAALEGTEATAEAP 240 Query: 241 SRAPQVDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRSENELLKTPNLGRKSLNEI 300 SRAPQ+DPILLRPVDDLELTVRSANCLKAENIYYIGDLIQR+ENELLKTPNLGRKSLNEI Sbjct: 241 SRAPQIDPILLRPVDDLELTVRSANCLKAENIYYIGDLIQRTENELLKTPNLGRKSLNEI 300 Query: 301 KEVLASRGLTLGMKLENWPPAGLEK 325 KEVLASRGLTLGMKLENWPPAGL+K Sbjct: 301 KEVLASRGLTLGMKLENWPPAGLDK 325