BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0020.0067.p (77 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IX64.1 D8IX64_HERSS Factor-for-inversion-stimulation transcrip... 159 2e-37 F1VW44.1 F1VW44_9BURK DNA-binding protein Fis 133 8e-30 A4G1U5.1 A4G1U5_HERAR DNA-binding protein fis (Factor-for-invers... 131 3e-29 A6SUQ0.1 A6SUQ0_JANMA Transcriptional regulator, Fis family 129 2e-28 C3XB54.1 C3XB54_OXAFO Transcriptional regulator 107 4e-22 C5AB33.1 C5AB33_BURGB DNA-binding protein Fis 107 7e-22 C6BC68.1 C6BC68_RALP1 Transcriptional regulator, Fis family 107 7e-22 B2UFL6.1 B2UFL6_RALPJ Transcriptional regulator, Fis family 107 7e-22 E2SVM9.1 E2SVM9_9RALS DNA-binding protein fis 107 7e-22 Q1LRB2.1 Q1LRB2_RALME Putative Fis-like DNA-binding protein 106 1e-21 >D8IX64.1 D8IX64_HERSS Factor-for-inversion-stimulation transcription regulator protein Length = 77 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 77/77 (100%), Positives = 77/77 (100%) Query: 1 MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60 MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL Sbjct: 1 MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60 Query: 61 GINRNTLRKKLQQHGLL 77 GINRNTLRKKLQQHGLL Sbjct: 61 GINRNTLRKKLQQHGLL 77 >F1VW44.1 F1VW44_9BURK DNA-binding protein Fis Length = 77 Score = 133 bits (335), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 64/77 (83%), Positives = 69/77 (89%) Query: 1 MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60 MSKESI++VVKKSLEKYFRDLGEQ PTNVYDMV+ TVEKP+ E VMARA GNQS AAE+L Sbjct: 1 MSKESIQEVVKKSLEKYFRDLGEQHPTNVYDMVVVTVEKPILEVVMARAAGNQSLAAEML 60 Query: 61 GINRNTLRKKLQQHGLL 77 GINRNTLRKKLQ H LL Sbjct: 61 GINRNTLRKKLQLHSLL 77 >A4G1U5.1 A4G1U5_HERAR DNA-binding protein fis (Factor-for-inversion stimulation protein) (HIN recombinational enhancer binding protein) Length = 77 Score = 131 bits (330), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 60/77 (77%), Positives = 71/77 (92%) Query: 1 MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60 MSK++I+DVVKKSLEKYFRDLGEQ+P+NVY+MV+ TVEKP+ E VM RAEGNQS AA++L Sbjct: 1 MSKDNIQDVVKKSLEKYFRDLGEQMPSNVYEMVVFTVEKPILEAVMERAEGNQSHAADML 60 Query: 61 GINRNTLRKKLQQHGLL 77 GINRNTLRKKLQQH +L Sbjct: 61 GINRNTLRKKLQQHDML 77 >A6SUQ0.1 A6SUQ0_JANMA Transcriptional regulator, Fis family Length = 126 Score = 129 bits (323), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 59/77 (76%), Positives = 71/77 (92%) Query: 1 MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60 MSK++I++VVKKSLEKYF+DLGEQ+P+NVY+MV+ TVEKP+ E VM RAEGNQS AA++L Sbjct: 50 MSKDNIQEVVKKSLEKYFKDLGEQMPSNVYEMVVFTVEKPILEAVMERAEGNQSHAADML 109 Query: 61 GINRNTLRKKLQQHGLL 77 GINRNTLRKKLQQH LL Sbjct: 110 GINRNTLRKKLQQHDLL 126 >C3XB54.1 C3XB54_OXAFO Transcriptional regulator Length = 81 Score = 107 bits (268), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 51/77 (66%), Positives = 62/77 (80%) Query: 1 MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60 MSKE I+DVV +SL++YF+DL Q PT++Y+M++ TVEKPV VMA A NQS AAEIL Sbjct: 5 MSKEHIQDVVLQSLQEYFKDLDGQKPTDIYNMIMHTVEKPVLVAVMAHARNNQSHAAEIL 64 Query: 61 GINRNTLRKKLQQHGLL 77 GINRNTLRKKL +H LL Sbjct: 65 GINRNTLRKKLLEHKLL 81 >C5AB33.1 C5AB33_BURGB DNA-binding protein Fis Length = 77 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 51/77 (66%), Positives = 61/77 (79%) Query: 1 MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60 MSK +IE V++SL+ YFRDL P +VYDMV++ VEKP+ E V+ +A GNQS AAE L Sbjct: 1 MSKHNIEQCVRESLDGYFRDLDGSNPHDVYDMVMSCVEKPMLEVVLEQAGGNQSLAAEYL 60 Query: 61 GINRNTLRKKLQQHGLL 77 GINRNTLRKKLQQHGLL Sbjct: 61 GINRNTLRKKLQQHGLL 77 >C6BC68.1 C6BC68_RALP1 Transcriptional regulator, Fis family Length = 77 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 48/77 (62%), Positives = 60/77 (77%) Query: 1 MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60 MS+ IE ++ SL+ Y+RDL + P+NVYDMVL +E+P+ ETVM A NQSQAA+ L Sbjct: 1 MSRNPIERCIRDSLDAYYRDLDGENPSNVYDMVLQAIERPLLETVMEWASNNQSQAADYL 60 Query: 61 GINRNTLRKKLQQHGLL 77 GINRNTLRKKLQQHGL+ Sbjct: 61 GINRNTLRKKLQQHGLI 77 >B2UFL6.1 B2UFL6_RALPJ Transcriptional regulator, Fis family Length = 77 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 48/77 (62%), Positives = 60/77 (77%) Query: 1 MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60 MS+ IE ++ SL+ Y+RDL + P+NVYDMVL +E+P+ ETVM A NQSQAA+ L Sbjct: 1 MSRNPIERCIRDSLDAYYRDLDGENPSNVYDMVLQAIERPLLETVMEWASNNQSQAADYL 60 Query: 61 GINRNTLRKKLQQHGLL 77 GINRNTLRKKLQQHGL+ Sbjct: 61 GINRNTLRKKLQQHGLI 77 >E2SVM9.1 E2SVM9_9RALS DNA-binding protein fis Length = 77 Score = 107 bits (266), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 48/77 (62%), Positives = 60/77 (77%) Query: 1 MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60 MS+ IE ++ SL+ Y+RDL + P+NVYDMVL +E+P+ ETVM A NQSQAA+ L Sbjct: 1 MSRNPIERCIRDSLDAYYRDLDGENPSNVYDMVLQAIERPLLETVMEWASNNQSQAADYL 60 Query: 61 GINRNTLRKKLQQHGLL 77 GINRNTLRKKLQQHGL+ Sbjct: 61 GINRNTLRKKLQQHGLI 77 >Q1LRB2.1 Q1LRB2_RALME Putative Fis-like DNA-binding protein Length = 77 Score = 106 bits (264), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 48/77 (62%), Positives = 61/77 (79%) Query: 1 MSKESIEDVVKKSLEKYFRDLGEQLPTNVYDMVLATVEKPVFETVMARAEGNQSQAAEIL 60 MS+ +I+ ++ SL+ YFRDL ++P+N+Y+MVL VE+P+ E VM RAE NQS AA L Sbjct: 1 MSRNAIDQCIRDSLDTYFRDLDGEVPSNMYNMVLEAVERPLLEAVMTRAERNQSLAAAYL 60 Query: 61 GINRNTLRKKLQQHGLL 77 GINRNTLRKKLQQHGLL Sbjct: 61 GINRNTLRKKLQQHGLL 77