BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0018.0039.p (239 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J214.1 D8J214_HERSS Transcription regulator protein 476 e-133 D6TWW8.1 D6TWW8_9CHLR GntR domain protein 160 1e-37 Q1AYL5.1 Q1AYL5_RUBXD Transcriptional regulator, GntR family 157 2e-36 B5MAB3.1 B5MAB3_9NOCA Putative transcriptional regulator, FadR f... 142 3e-32 A5D030.1 A5D030_PELTS Transcriptional regulator 137 2e-30 A0PZ87.1 A0PZ87_CLONN Transcriptional regulator, GntR family, pu... 134 1e-29 D5UL07.1 D5UL07_CELFN GntR domain protein 131 8e-29 C4WR73.1 C4WR73_9RHIZ Transcriptional regulator nanR 130 2e-28 B1BAM8.1 B1BAM8_CLOBO Transcriptional regulator, FadR family 130 2e-28 A1WLF1.1 A1WLF1_VEREI Transcriptional regulator, GntR family 127 2e-27 >D8J214.1 D8J214_HERSS Transcription regulator protein Length = 239 Score = 476 bits (1226), Expect = e-133, Method: Compositional matrix adjust. Identities = 239/239 (100%), Positives = 239/239 (100%) Query: 1 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL 60 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL Sbjct: 1 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL 60 Query: 61 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIE 120 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIE Sbjct: 61 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIE 120 Query: 121 DAELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRS 180 DAELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRS Sbjct: 121 DAELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRS 180 Query: 181 ITSRIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYRSAGRNRNESVHD 239 ITSRIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYRSAGRNRNESVHD Sbjct: 181 ITSRIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYRSAGRNRNESVHD 239 >D6TWW8.1 D6TWW8_9CHLR GntR domain protein Length = 246 Score = 160 bits (405), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 87/220 (39%), Positives = 132/220 (60%) Query: 3 FDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLG 62 F+ + ++SE + +LL +++ L+P +LP ER+LA L V RP++REA+R L+++ Sbjct: 2 FEISPKSALSEGIVNKLLALLKERKLQPGDRLPSERDLAEQLQVSRPSLREALRALSIMH 61 Query: 63 LLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIEDA 122 ++ IRQG GT++SSLE + L+E L+ + L T SLF+AR ++E G+ LAA I D Sbjct: 62 VVEIRQGSGTYISSLEPKRLVEHLDFVFALADSTYLSLFEARKVVEVGICGLAAQRITDE 121 Query: 123 ELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRSIT 182 E+ RL +E L+D + ADVE HE I EA +P L I S+ L SR T Sbjct: 122 EITRLESCLEKSLLGLTDAELYFQADVELHEIITEAAASPILSRIMASISHLSLASRQRT 181 Query: 183 SRIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRV 222 + +P + ++DHR I+ AL+ RD + A AM HL+ V Sbjct: 182 AVLPGIAYQVIEDHRAIIQALRQRDSEAARLAMYQHLLHV 221 >Q1AYL5.1 Q1AYL5_RUBXD Transcriptional regulator, GntR family Length = 247 Score = 157 bits (396), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 93/220 (42%), Positives = 134/220 (60%) Query: 10 SISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLRIRQG 69 + +E+V RL +I P +LPPEREL ++LGV RP +REA++ LA L L+RIRQG Sbjct: 12 TTTERVIGRLKELIGERKFGPGDKLPPERELCSLLGVSRPILREALQALAALRLVRIRQG 71 Query: 70 EGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIEDAELDRLAR 129 +G +V+SL+T LLEPL ++ L+P +E L+ AR +IE G+ LAA+ + RL Sbjct: 72 DGVYVTSLKTDLLLEPLRFVLRLDPTAIEQLYRARQVIEVGITELAASSMTPEAERRLEE 131 Query: 130 NVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRSITSRIPATL 189 + + + DP AF+ D+E HE I NPFL + SL L + R T +P Sbjct: 132 ILAESEAQVEDPKAFSRTDIELHETIARLVTNPFLTVVIESLNELSRAGREFTCTVPGVT 191 Query: 190 ERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYRSA 229 R+L++HR+I+ ALKARD + A AM+ HL V A++SA Sbjct: 192 PRALEEHRRIVAALKARDGRAAGRAMKEHLENVLAAWQSA 231 >B5MAB3.1 B5MAB3_9NOCA Putative transcriptional regulator, FadR family Length = 239 Score = 142 bits (359), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 93/225 (41%), Positives = 127/225 (56%), Gaps = 2/225 (0%) Query: 3 FDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLG 62 F + +S QV ++ +R+G LKP +LPPERELA GVGR ++REA+R L LLG Sbjct: 10 FTAVKLGRVSRQVVEQFQEKVRAGHLKPGDRLPPERELAVQFGVGRNSMREALRELDLLG 69 Query: 63 LLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIEDA 122 L+ R GEGTFV+ L+ P +I+L+ +S+ + R + E GVAALAAT++ DA Sbjct: 70 LVTSRHGEGTFVAVPSAEALMAPFRAVIELSSTAGDSVMEFRRVFEPGVAALAATNLTDA 129 Query: 123 ELDRL-ARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRSI 181 D L A VE E R+ + AD +FH A NP + + +LY L K RS Sbjct: 130 GRDLLYAALVEFENRVAAGDDTVVGADADFHLMTGHATGNPTVIGVHTALYALLKDFRSN 189 Query: 182 TSRIP-ATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDA 225 SR A + ++ HR I +A+ ARDP A+ AMR HL V A Sbjct: 190 LSRSSYAPSDTAVAGHRLIYEAILARDPDAAAAAMREHLDDVSGA 234 >A5D030.1 A5D030_PELTS Transcriptional regulator Length = 243 Score = 137 bits (344), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 84/229 (36%), Positives = 123/229 (53%), Gaps = 4/229 (1%) Query: 1 MSFDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLAL 60 M+ P+ K + E++ +++ +I G LKP +L PERE+A L VGR AVREA R L Sbjct: 12 MNLKPVKTKKVYEEIIEQVKNLIADGTLKPGDRLIPEREMADRLQVGRSAVREAYRALEA 71 Query: 61 LGLLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIE 120 +G++ IRQGEGTF+ + T L E L +++ T+ + R I+E G A LAA Sbjct: 72 MGIIDIRQGEGTFIKEVNTDMLAETLALMLATEKNTMREFLELRKILEVGAAGLAALRCT 131 Query: 121 DAELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFL----QSIAGSLYMLGK 176 D E+ ++A + + AD +FH AI EA N L SI ++ L K Sbjct: 132 DEEVIKMAGALAQMEEDIKAGDVGQQADWQFHYAIAEATRNSLLVLLMDSIRDTMSRLLK 191 Query: 177 KSRSITSRIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDA 225 ++R R P T +R L++H +I +A+K KA +AM HL RV A Sbjct: 192 EARDELYRTPGTPQRLLKEHYEIFEAVKNGHDVKAQKAMYDHLDRVEKA 240 >A0PZ87.1 A0PZ87_CLONN Transcriptional regulator, GntR family, putative Length = 228 Score = 134 bits (337), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 80/224 (35%), Positives = 122/224 (54%), Gaps = 12/224 (5%) Query: 3 FDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLG 62 F PI + EQV ++ MI+ G LK +LP ER+L L V R ++REA+R L ++G Sbjct: 2 FTPIKNTKVYEQVINQIKEMIQDGTLKKGDKLPSERDLVEQLHVSRTSIREALRVLEIVG 61 Query: 63 LLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIEDA 122 ++ +QGEG F+ + LLEPL ++ LN LE +F+ R +IE AAL+A I D Sbjct: 62 IVECKQGEGNFIRTNFNDTLLEPLSIMFMLNDCKLEEIFELRKVIEIETAALSAERITDE 121 Query: 123 ELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSL-----YMLGKK 177 EL ++ N+ ++ + D D +FH +I AC+N + SI ++ Y + Sbjct: 122 ELKKI-ENILEKIKSSDDEEEKVKLDTQFHYSIAGACHNILIVSIINAVSTLMDYFIKDA 180 Query: 178 SRSITSRIPATLERSLQD--HRQILDALKARDPQKASEAMRHHL 219 +SI L + + D H IL ALK +P +A +AMR+HL Sbjct: 181 RKSII----GDLHKEIIDEQHDNILKALKNHNPYEAVKAMRNHL 220 >D5UL07.1 D5UL07_CELFN GntR domain protein Length = 243 Score = 131 bits (329), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 83/221 (37%), Positives = 130/221 (58%), Gaps = 9/221 (4%) Query: 10 SISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLRIRQG 69 S ++ V + + +I G L+P +LP E+ELA+ LGV R ++RE +R L +LG+L R G Sbjct: 2 SRTQDVVEDVQRLILDGGLRPGDRLPAEKELASELGVSRGSLREGVRALVVLGILEARHG 61 Query: 70 EGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIEDAELDRLAR 129 +GT+V+SL+ LL PL + DL PG SL R ++ET A LAA H+ DA + R R Sbjct: 62 DGTYVTSLDPATLLSPLAFLADL-PGDHSSLHAVRAMLETEAAGLAALHLTDAHVARARR 120 Query: 130 NVEDEARLLSDPAA----FAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRS-ITSR 184 ++D AR L P AAAD+ FH+A+ +A NP L ++ + G+++R + Sbjct: 121 ALDDMARALVAPRPDSERLAAADLAFHQAVADASGNPVLAAL--LHALAGRQARHRVWDE 178 Query: 185 IPATL-ERSLQDHRQILDALKARDPQKASEAMRHHLMRVRD 224 +P +R+ ++H +L A+ ARDP +A M H++ + D Sbjct: 179 MPEIAGDRTFEEHEAVLAAITARDPDRARLRMAMHMVAIED 219 >C4WR73.1 C4WR73_9RHIZ Transcriptional regulator nanR Length = 235 Score = 130 bits (327), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 79/229 (34%), Positives = 124/229 (54%), Gaps = 4/229 (1%) Query: 3 FDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLG 62 F+PIV++ +S++V RL MI SG L+P ++P ER L GVGRPA+REA++ LA +G Sbjct: 5 FEPIVRRKLSDEVFDRLENMITSGELEPGDEMPSERVLMERFGVGRPAIREAMQSLAKMG 64 Query: 63 LLRIRQGEGTFVSSLETRELLEPLE----MIIDLNPGTLESLFDARLIIETGVAALAATH 118 L+ I GE V L R + + ++ +++ + TLE L AR+ E G+ A Sbjct: 65 LVSISHGERAKVLKLTARSIFQQVDPTAKIMLAQSMDTLEDLKSARIFFERGIVRETAQK 124 Query: 119 IEDAELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKS 178 I + ++ L + +E + L D AF AAD+EFH I NP L +++ ++ K+ Sbjct: 125 ITETDIAELRQIIERQRESLGDADAFIAADMEFHVRIARISGNPILVAVSEAMLAWLKEY 184 Query: 179 RSITSRIPATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYR 227 + + +L +H +ILD L +D +A AM HL R R Y+ Sbjct: 185 HTHMLIWTGKEKYTLVEHEEILDCLSVKDADRAEAAMLRHLERSRTLYK 233 >B1BAM8.1 B1BAM8_CLOBO Transcriptional regulator, FadR family Length = 228 Score = 130 bits (326), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 77/220 (35%), Positives = 121/220 (55%), Gaps = 4/220 (1%) Query: 3 FDPIVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLG 62 F PI + EQV ++ MI+ G LK +LP ER+L L V R ++REA+R L ++G Sbjct: 2 FTPIKNTKVYEQVINQIKDMIQDGTLKKGDKLPSERDLVDKLEVSRTSIREALRVLEIVG 61 Query: 63 LLRIRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIEDA 122 ++ +QGEG FV + LLEPL ++ LN TL+ +F+ R +IE AALAA I ++ Sbjct: 62 IVECKQGEGNFVRTDFNDTLLEPLSIMFMLNDCTLQEIFELRKVIEIETAALAAKKITES 121 Query: 123 ELDRLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSL-YMLGKKSRSI 181 +LD + R++ D + D D +FH +I +A N + SI ++ ++ + Sbjct: 122 QLDDM-RSILDTIKTSDDEDEKVKLDTQFHYSIAKASQNFLIVSIINAVSTLMDSFIKDA 180 Query: 182 TSRIPATLERSLQD--HRQILDALKARDPQKASEAMRHHL 219 I + L + + D H +I AL +P A++AMR HL Sbjct: 181 RKNIISNLHKEIIDKQHDKIWKALNNHNPSGAADAMRTHL 220 >A1WLF1.1 A1WLF1_VEREI Transcriptional regulator, GntR family Length = 379 Score = 127 bits (318), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 77/228 (33%), Positives = 118/228 (51%) Query: 6 IVQKSISEQVAQRLLTMIRSGLLKPDQQLPPERELAAMLGVGRPAVREAIRGLALLGLLR 65 + ++++ +Q++ +L MI SGLL+ +LP ER LA L V R VR AI L ++ Sbjct: 151 VGKRTVKDQISDKLAYMIHSGLLRAGDELPSERALATTLEVSRETVRAAIGVLHARRMVE 210 Query: 66 IRQGEGTFVSSLETRELLEPLEMIIDLNPGTLESLFDARLIIETGVAALAATHIEDAELD 125 + QG T V + E + + L + E + +AR +E V AA I D L Sbjct: 211 VSQGARTKVIGAGLLPMHESVSTLGSLKERSFEEVAEARAAVELQVIRFAAQRITDNGLA 270 Query: 126 RLARNVEDEARLLSDPAAFAAADVEFHEAIIEACNNPFLQSIAGSLYMLGKKSRSITSRI 185 RL+ V+++ +L DP F +D EFH + ++C N L + Y + R + Sbjct: 271 RLSSLVKEQELMLKDPVGFQISDREFHTTLYKSCGNSLLVDVVSDFYDYALEYRRRALQR 330 Query: 186 PATLERSLQDHRQILDALKARDPQKASEAMRHHLMRVRDAYRSAGRNR 233 P ++ S+QDH++I+DALK R+P A AMR HL RVR+ NR Sbjct: 331 PGAIKHSVQDHKEIVDALKTRNPDAAVAAMRGHLERVRETTMKEMVNR 378