BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0053.p (445 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J255.1 D8J255_HERSS C4-dicarboxylate transport response regula... 889 0.0 F1VU67.1 F1VU67_9BURK Putative response regulator of the c4-dica... 609 e-172 D3P0B5.1 D3P0B5_AZOS1 Putative uncharacterized protein 515 e-144 B2AGL0.1 B2AGL0_CUPTR Transcriptional response regulator, C4-DIC... 495 e-138 D5WAQ0.1 D5WAQ0_BURSC Two component, sigma54 specific, transcrip... 493 e-137 B5WT53.1 B5WT53_9BURK Two component, sigma54 specific, transcrip... 493 e-137 Q0KEX3.1 Q0KEX3_CUPNH Response regulator of C4-dicarboxylate tra... 493 e-137 B2JC56.1 B2JC56_BURP8 Two component, sigma54 specific, transcrip... 492 e-137 Q146D4.1 Q146D4_BURXL Two component, sigma54 specific, transcrip... 491 e-136 Q476M6.1 Q476M6_CUPPJ Helix-turn-helix, Fis-type 490 e-136 >D8J255.1 D8J255_HERSS C4-dicarboxylate transport response regulator transcription regulator protein Length = 445 Score = 889 bits (2298), Expect = 0.0, Method: Compositional matrix adjust. Identities = 444/445 (99%), Positives = 444/445 (99%) Query: 1 MDKPGGAASALLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVR 60 MDKPGGAASALLIEDEQTVRRATAQALELGGFAVTAC SAEEALPLITRDFAGVVVSDVR Sbjct: 1 MDKPGGAASALLIEDEQTVRRATAQALELGGFAVTACGSAEEALPLITRDFAGVVVSDVR 60 Query: 61 LPGLSGLDVLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIAL 120 LPGLSGLDVLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIAL Sbjct: 61 LPGLSGLDVLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIAL 120 Query: 121 RAQEKRNLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGT 180 RAQEKRNLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGT Sbjct: 121 RAQEKRNLVLENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGT 180 Query: 181 GKEVVARQLHAASGRKGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANG 240 GKEVVARQLHAASGRKGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANG Sbjct: 181 GKEVVARQLHAASGRKGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANG 240 Query: 241 GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQF 300 GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQF Sbjct: 241 GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQF 300 Query: 301 REDLYYRIGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDW 360 REDLYYRIGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDW Sbjct: 301 REDLYYRIGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDW 360 Query: 361 PGNVRELRNFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVA 420 PGNVRELRNFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVA Sbjct: 361 PGNVRELRNFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVA 420 Query: 421 VAAERLGIPKKTLYDKIRKYQLAGS 445 VAAERLGIPKKTLYDKIRKYQLAGS Sbjct: 421 VAAERLGIPKKTLYDKIRKYQLAGS 445 >F1VU67.1 F1VU67_9BURK Putative response regulator of the c4-dicarboxylate transport two-component regulatory system transcription regulator protein Length = 444 Score = 609 bits (1570), Expect = e-172, Method: Compositional matrix adjust. Identities = 304/432 (70%), Positives = 356/432 (82%), Gaps = 1/432 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 +L+EDE +R AT Q LELGGF V CASAE+A L+ RD+ GV+V+DVRLPG SGL +L Sbjct: 7 VLVEDEAALRLATGQTLELGGFTVLPCASAEQADGLLVRDYPGVLVTDVRLPGRSGLQLL 66 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 A+V+AID DLPV+VVTGHGDV MAVEAMRAGAYDF+EKPF+++ LL RAQEKR+LVL Sbjct: 67 AQVMAIDADLPVVVVTGHGDVEMAVEAMRAGAYDFIEKPFAAERLLATVRRAQEKRDLVL 126 Query: 131 ENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQLH 190 NRRL+ AW P+LPPL+GQS AIERVRTL+ SLGP VDVLINGQTG+GKEVVARQLH Sbjct: 127 ANRRLQAAWLQQPDLPPLLGQSAAIERVRTLVASLGPTSVDVLINGQTGSGKEVVARQLH 186 Query: 191 AASGRKGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEIES 250 AASGRKG FVA+NCGALPE+VFESE+FGHE GAFT AQKRRIGKLEYA+GGTLFLDEIES Sbjct: 187 AASGRKGHFVAINCGALPESVFESEMFGHEAGAFTSAQKRRIGKLEYADGGTLFLDEIES 246 Query: 251 MPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRIGV 310 MPL LQ+KLLRVLQER+LERLGGNE V DCRV+AASKADLL+L+A G FREDLYYRI V Sbjct: 247 MPLNLQIKLLRVLQERKLERLGGNEPVPFDCRVIAASKADLLQLSASGAFREDLYYRISV 306 Query: 311 VAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELRNF 370 V+I LP L QRREDI LLLAHF QAAA+R++R P WS AQ+ WQ RDWPGNVRELRN Sbjct: 307 VSIGLPRLAQRREDIPLLLAHFVQAAALRHQRPVPLWSTAQLLHWQSRDWPGNVRELRNV 366 Query: 371 ADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERLGIPK 430 A+R VLGV + +A V L ++ +E+ LI AAL S+ SVA+AAERLG+P+ Sbjct: 367 AERLVLGVLEDSA-VVEQDDAGTHHLTTLLDAYESMLITAALNASDASVALAAERLGLPR 425 Query: 431 KTLYDKIRKYQL 442 KTLYDK++K+++ Sbjct: 426 KTLYDKLKKHRI 437 >D3P0B5.1 D3P0B5_AZOS1 Putative uncharacterized protein Length = 451 Score = 515 bits (1326), Expect = e-144, Method: Compositional matrix adjust. Identities = 271/443 (61%), Positives = 328/443 (74%), Gaps = 6/443 (1%) Query: 4 PGGAASALLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPG 63 P A S L ++DE+ VR A QALEL GF VTAC AE AL + RD+ G +V+DVR+P Sbjct: 6 PEAAGSVLFVDDERAVRLAGQQALELAGFEVTACDGAERALRHVARDWPGCLVTDVRMPQ 65 Query: 64 LSGLDVLARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQ 123 + GL +LARV ID DLPVI++TGHGDV MAVEAMR GAYDF+EKPF SD L E+A RA Sbjct: 66 MDGLALLARVREIDPDLPVILITGHGDVPMAVEAMRNGAYDFLEKPFPSDRLTEVARRAV 125 Query: 124 EKRNLVLENRRLRE--AWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTG 181 EKR LVLENRRLR A DP +VG++P IER+R I ++ D DVL+ G+TGTG Sbjct: 126 EKRRLVLENRRLRARIAGGSDPA-ETIVGRTPGIERLRATIAAVADTDADVLVFGETGTG 184 Query: 182 KEVVARQLHAASGR-KGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANG 240 KE+VAR LHAASGR K PFVALNCGA+PET+FESE+FGHE GAFTGA KRRIG++E+A G Sbjct: 185 KEMVARALHAASGRRKNPFVALNCGAMPETIFESELFGHEAGAFTGAAKRRIGRIEHAGG 244 Query: 241 GTLFLDEIESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQF 300 GTLFLDEIESMPLALQVKLLRV+QER +E LG NE V +D RVVAA+KADL + A G+F Sbjct: 245 GTLFLDEIESMPLALQVKLLRVIQERVVEPLGSNEQVPVDLRVVAATKADLRQAADAGKF 304 Query: 301 REDLYYRIGVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDW 360 R DLYYR+ VV + +P L +RR+DI LL HF AA RY RE + QMQ+ +DW Sbjct: 305 RADLYYRLNVVVLTIPPLRERRDDIPLLFQHFVAQAAGRYNREPGTPTREQMQRLIGQDW 364 Query: 361 PGNVRELRNFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVA 420 PGNVRELRN ADR+VLG+E +A + VS+ P+ SL EQV+ +E GLI + L GSV Sbjct: 365 PGNVRELRNAADRFVLGLEDVAPAPVSAPSPL--SLAEQVDLYEKGLIQSELARQRGSVK 422 Query: 421 VAAERLGIPKKTLYDKIRKYQLA 443 A E L IP+KT YDK+++Y L+ Sbjct: 423 AAIEALNIPRKTFYDKLKRYGLS 445 >B2AGL0.1 B2AGL0_CUPTR Transcriptional response regulator, C4-DICARBOXYLATE TRANSPORT RESPONSE REGULATOR Length = 445 Score = 495 bits (1275), Expect = e-138, Method: Compositional matrix adjust. Identities = 263/434 (60%), Positives = 319/434 (73%), Gaps = 2/434 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 L +EDE VR+ATAQ+LEL GF V A SAE A+P + FAGVVV+DVRLPG SGLD+L Sbjct: 12 LFVEDEPLVRQATAQSLELAGFRVLALPSAEAAIPHLHGAFAGVVVTDVRLPGASGLDLL 71 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 +PVI+VTGHGD+ MAV+AMR GAYDF+EKPF +D L + RA E+R L L Sbjct: 72 QHCRNAAPGVPVILVTGHGDITMAVQAMREGAYDFIEKPFGADRLTDTVRRALERRALEL 131 Query: 131 ENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQLH 190 EN+ LR A ++G+SPAIE+VR L+ ++ P DV V+ING+TGTGKE+VAR LH Sbjct: 132 ENQALRRELAGPAAGTRIIGRSPAIEQVRALVANVAPTDVPVMINGETGTGKELVARSLH 191 Query: 191 AASGR-KGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEIE 249 A SGR +GPF+ALNCGA+PE +FESE+FGHE GAFTGA KRRIGKLE+A+GGTLFLDEIE Sbjct: 192 ALSGRAEGPFIALNCGAVPEAIFESEMFGHEAGAFTGAGKRRIGKLEHASGGTLFLDEIE 251 Query: 250 SMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRIG 309 SMPLALQVKLLRVLQE LERLG N SV ID R+VAA+K D+ L A+G FREDLYYR+ Sbjct: 252 SMPLALQVKLLRVLQEGSLERLGSNASVKIDVRIVAAAKGDMDALVAQGSFREDLYYRLN 311 Query: 310 VVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELRN 369 VV I LP L +RREDI L HF +AVRY+R +P S AQ Q QR WPGNVRELRN Sbjct: 312 VVTIALPPLRERREDIVPLFEHFSLVSAVRYQRPAPILSEAQRQALAQRPWPGNVRELRN 371 Query: 370 FADRWVLGVEQMAASAVSSAVPVLSS-LPEQVEQFEAGLIAAALKDSEGSVAVAAERLGI 428 ADR VLGV + + +A P S+ L E++E FE +IA AL + G+V+ AA+ L + Sbjct: 372 AADRMVLGVPEGGQAGAQAAGPDESAPLRERMEHFERAVIADALARTGGAVSQAADLLQV 431 Query: 429 PKKTLYDKIRKYQL 442 K TLYDKI++Y L Sbjct: 432 GKATLYDKIKRYGL 445 >D5WAQ0.1 D5WAQ0_BURSC Two component, sigma54 specific, transcriptional regulator, Fis family Length = 449 Score = 493 bits (1270), Expect = e-137, Method: Compositional matrix adjust. Identities = 256/435 (58%), Positives = 319/435 (73%), Gaps = 2/435 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 L IED++ VRRA+ Q+L+L GF V AS E A LI+ DF+GV+VSD+RLPG SGLD+L Sbjct: 8 LYIEDDELVRRASVQSLQLAGFDVIGHASVEAAAKLISADFSGVIVSDIRLPGASGLDLL 67 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 A+ D+PVI+VTGHGD+ MAV+AMR GAYDF+EKPF+S+ L+E RA E+R LVL Sbjct: 68 AQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRALERRKLVL 127 Query: 131 ENRRLREAWA-HDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQL 189 EN LR A + P ++G+SPAIE+VR LI ++ P D VLING TG GKE++AR L Sbjct: 128 ENLALRRELAGQNAVAPRIIGRSPAIEQVRRLIANVAPTDASVLINGDTGAGKELIARSL 187 Query: 190 HAASGRKG-PFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEI 248 H S R+ PF+A+NCGALPE +FESE+FG+EPGAFTGA KRRIGKLE+A+GGTLFLDEI Sbjct: 188 HELSPRRDKPFIAVNCGALPEPMFESEMFGYEPGAFTGAAKRRIGKLEHASGGTLFLDEI 247 Query: 249 ESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRI 308 ESMPLALQVKLLRVLQ+ LERLG N+ + +DCRVVAA+K D+ + A+G FR DL YR+ Sbjct: 248 ESMPLALQVKLLRVLQDGVLERLGSNQPIRVDCRVVAAAKGDMAEHVADGSFRRDLLYRL 307 Query: 309 GVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELR 368 VV I LP L++RREDI L HF AAVRY+R +P + Q QRDWPGNVRELR Sbjct: 308 NVVTIALPPLSERREDIVPLFEHFLLDAAVRYQRPAPMLTDRQRASLMQRDWPGNVRELR 367 Query: 369 NFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERLGI 428 N ADR+VLG+ + L E+VEQFE +IA AL+ + G VAVAA+RL + Sbjct: 368 NAADRFVLGIADEPVLSFGEDDGTTHPLKERVEQFERAMIAEALEQAGGVVAVAADRLQL 427 Query: 429 PKKTLYDKIRKYQLA 443 K TLY+KI++Y LA Sbjct: 428 GKATLYEKIKRYGLA 442 >B5WT53.1 B5WT53_9BURK Two component, sigma54 specific, transcriptional regulator, Fis family Length = 449 Score = 493 bits (1269), Expect = e-137, Method: Compositional matrix adjust. Identities = 256/435 (58%), Positives = 320/435 (73%), Gaps = 2/435 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 L IED++ VRRA+ Q+L+L GF V AS E A LI+ DF+GV+VSD+RLPG SGLD+L Sbjct: 8 LYIEDDELVRRASVQSLQLAGFDVIGHASVEAAAKLISADFSGVIVSDIRLPGASGLDLL 67 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 A+ D+PVI+VTGHGD+ MAV+AMR GAYDF+EKPF+S+ L+E RA E+R LVL Sbjct: 68 AQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRALERRKLVL 127 Query: 131 ENRRLREAWA-HDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQL 189 EN LR A + P ++G+SPAIE+VR LI ++ P D VLING TG GKE++AR L Sbjct: 128 ENLALRRELAGQNAVAPRIIGRSPAIEQVRRLIANVAPTDASVLINGDTGAGKELIARSL 187 Query: 190 HAASGRKG-PFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEI 248 H S R+ PF+A+NCGALPE +FESE+FG+EPGAFTGA KRRIGKLE+A+GGTLFLDEI Sbjct: 188 HELSPRRDKPFIAVNCGALPEPMFESEMFGYEPGAFTGAAKRRIGKLEHASGGTLFLDEI 247 Query: 249 ESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRI 308 ESMPLALQVKLLRVLQ+ LERLG N+ + ++CRVVAA+K D+ + A+G FR DL YR+ Sbjct: 248 ESMPLALQVKLLRVLQDGVLERLGSNQPIRVNCRVVAAAKGDMAEHVADGSFRRDLLYRL 307 Query: 309 GVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELR 368 VV I LP L++RREDI L HF AAVRY+R +P + Q QRDWPGNVRELR Sbjct: 308 NVVTIALPPLSERREDIVPLFEHFLLDAAVRYQRPAPMLTDRQRASLMQRDWPGNVRELR 367 Query: 369 NFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERLGI 428 N ADR+VLG+ + V L E+VEQFE +IA AL+ + G VAVAA+RL + Sbjct: 368 NAADRFVLGIADEPVLSFGDDEGVTHPLKERVEQFERAMIAEALEQAGGVVAVAADRLQL 427 Query: 429 PKKTLYDKIRKYQLA 443 K TLY+KI++Y LA Sbjct: 428 GKATLYEKIKRYGLA 442 >Q0KEX3.1 Q0KEX3_CUPNH Response regulator of C4-dicarboxylate transportsystem Length = 445 Score = 493 bits (1268), Expect = e-137, Method: Compositional matrix adjust. Identities = 261/434 (60%), Positives = 317/434 (73%), Gaps = 2/434 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 L +EDE VR+ATAQ+LEL GFAV A SAE A+P + FAGVVV+DVRLPG SGLD+L Sbjct: 12 LFVEDEPLVRQATAQSLELAGFAVLALPSAEAAIPHLHGAFAGVVVTDVRLPGASGLDLL 71 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 +PVI+VTGHGD+ MAV+AMR GAYDF+EKPF +D L + RA E+R L L Sbjct: 72 QHCRNAAPGVPVILVTGHGDITMAVQAMREGAYDFIEKPFGADRLTDTVRRALERRALEL 131 Query: 131 ENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQLH 190 EN+ LR A ++G+SPAI +VR L+ ++ P DV V+ING+TGTGKE+VAR LH Sbjct: 132 ENQALRRELAGPAAGTRIIGRSPAIGQVRALVANVAPTDVPVMINGETGTGKELVARSLH 191 Query: 191 AASGR-KGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEIE 249 A SGR +GPF+ALNCGA+PE +FESE+FGHE GAFTGA KRRIGKLE+A+GGTLFLDEIE Sbjct: 192 ALSGRAEGPFIALNCGAVPEAIFESEMFGHEAGAFTGAGKRRIGKLEHASGGTLFLDEIE 251 Query: 250 SMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRIG 309 SMPLALQVKLLRVLQE LERLG N SV ID R+VAA+K D+ L +G FREDLYYR+ Sbjct: 252 SMPLALQVKLLRVLQEGSLERLGSNASVKIDVRIVAAAKGDMDALVVQGSFREDLYYRLN 311 Query: 310 VVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELRN 369 VV I LP L +RREDI L HF +AVRY+R +P S AQ Q QR WPGNVRELRN Sbjct: 312 VVTIALPPLRERREDIVPLFEHFSLVSAVRYQRPAPILSEAQRQALAQRPWPGNVRELRN 371 Query: 370 FADRWVLGVEQMAASAVSSAVP-VLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERLGI 428 ADR VLGV + + +A P + L E++E FE +IA AL + G+V+ AA+ L + Sbjct: 372 AADRMVLGVPEGGQAGAQAAGPDETAPLRERMEHFERAVIADALARTGGAVSQAADLLQV 431 Query: 429 PKKTLYDKIRKYQL 442 K TLYDKI++Y L Sbjct: 432 GKATLYDKIKRYGL 445 >B2JC56.1 B2JC56_BURP8 Two component, sigma54 specific, transcriptional regulator, Fis family Length = 452 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 257/437 (58%), Positives = 321/437 (73%), Gaps = 4/437 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 L IED++ VRRA+ Q+L+L GF V AS E A LI +F+GV+VSD+RLPG SGLD+L Sbjct: 9 LYIEDDELVRRASVQSLQLAGFEVVGYASVESAAKLIHAEFSGVIVSDIRLPGASGLDLL 68 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 A+ ++PVI+VTGHGD+ MAV+AMR GAYDF+EKPF+S+ L+E RA E+R LVL Sbjct: 69 AQCRERAPEVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRAVERRTLVL 128 Query: 131 ENRRLREAWAHDPELPP-LVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQL 189 EN LR A L P ++G+SPAIE+VR LI ++ P D VLING TG GKE++AR L Sbjct: 129 ENLALRRELAGQGTLAPRIIGRSPAIEQVRKLIANVAPTDASVLINGDTGAGKELIARSL 188 Query: 190 HAASGRKG-PFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEI 248 H S R+ PF+A+NCGALPE +FESE+FG+EPGAFTGA KRRIGKLE+A+GGTLFLDEI Sbjct: 189 HELSPRRDKPFLAVNCGALPEPMFESEMFGYEPGAFTGAAKRRIGKLEHASGGTLFLDEI 248 Query: 249 ESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRI 308 ESMPLALQVKLLRVLQ+ LERLG N+ V +DCR+VAA+K D+ A G FR DL YR+ Sbjct: 249 ESMPLALQVKLLRVLQDGVLERLGSNQPVRVDCRIVAAAKGDMTDHVAAGTFRRDLLYRL 308 Query: 309 GVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELR 368 VV I LP L++RREDI L HF AAVRY+R +P + Q QR+WPGNVRELR Sbjct: 309 NVVTIALPPLSERREDIVPLFEHFLLDAAVRYQRPAPILTDRQRTNLMQREWPGNVRELR 368 Query: 369 NFADRWVLGVEQMAASAV--SSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERL 426 N ADR+VLGV A+A + + L E+VEQFE +IA AL+ + G+VAVAA+RL Sbjct: 369 NAADRFVLGVGDDTATATGDDALTSPMQPLKERVEQFERAVIAEALEQTGGAVAVAADRL 428 Query: 427 GIPKKTLYDKIRKYQLA 443 + K TLY+KI++Y LA Sbjct: 429 QVGKATLYEKIKRYGLA 445 >Q146D4.1 Q146D4_BURXL Two component, sigma54 specific, transcriptional regulator, NtrC subfamily, Fis family Length = 450 Score = 491 bits (1263), Expect = e-136, Method: Compositional matrix adjust. Identities = 255/435 (58%), Positives = 317/435 (72%), Gaps = 2/435 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 L IED++ VRRA+ Q+L+L GF V AS E A I DF+GV+VSD+RLPG SGLD+L Sbjct: 9 LYIEDDELVRRASVQSLQLAGFEVIGHASVESAAKTIGADFSGVIVSDIRLPGASGLDLL 68 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 A+ D+PVI+VTGHGD+ MAV+AMR GAYDF+EKPF+S+ L+E RA E+R LVL Sbjct: 69 AQCHERAPDVPVILVTGHGDISMAVQAMRDGAYDFIEKPFASERLIETVRRALERRKLVL 128 Query: 131 ENRRLREAWAHDPELPP-LVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQL 189 EN LR A + P ++G+SPAIE+VR LI ++ P D VLING TG GKE++AR L Sbjct: 129 ENLALRRELAEQSSVAPRIIGRSPAIEQVRRLIANIAPTDASVLINGDTGAGKELIARSL 188 Query: 190 HAASGRKG-PFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEI 248 H S R+ PF+A+NCGALPE +FESE+FG+EPGAFTGA KRRIGKLE+A+GGTLFLDEI Sbjct: 189 HELSPRRDKPFIAVNCGALPEPMFESEMFGYEPGAFTGAAKRRIGKLEHASGGTLFLDEI 248 Query: 249 ESMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRI 308 ESMPLALQVKLLRVLQ+ LERLG N+ + ++CRVVAA+K D+ + A+G FR DL YR+ Sbjct: 249 ESMPLALQVKLLRVLQDGVLERLGSNQPIRVNCRVVAAAKGDMAEHVADGSFRRDLLYRL 308 Query: 309 GVVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELR 368 VV I LP L +RREDI L HF AAVRY+R +P + Q QRDWPGNVRELR Sbjct: 309 NVVTIALPPLGERREDIVPLFEHFLLDAAVRYQRPAPILTDRQRAGLMQRDWPGNVRELR 368 Query: 369 NFADRWVLGVEQMAASAVSSAVPVLSSLPEQVEQFEAGLIAAALKDSEGSVAVAAERLGI 428 N ADR+VLGV + L E+VEQFE +IA AL+ + G VAVAA+RL + Sbjct: 369 NAADRFVLGVADDPVMSFGDDGAAAQPLKERVEQFERAVIAEALEQAGGVVAVAADRLQL 428 Query: 429 PKKTLYDKIRKYQLA 443 K TLY+KI++Y+LA Sbjct: 429 GKATLYEKIKRYRLA 443 >Q476M6.1 Q476M6_CUPPJ Helix-turn-helix, Fis-type Length = 441 Score = 490 bits (1262), Expect = e-136, Method: Compositional matrix adjust. Identities = 258/434 (59%), Positives = 319/434 (73%), Gaps = 2/434 (0%) Query: 11 LLIEDEQTVRRATAQALELGGFAVTACASAEEALPLITRDFAGVVVSDVRLPGLSGLDVL 70 L +EDE VR+ATAQ+LEL GF+V A +AE ALP ++ DF GV+V+DVRLPG SGL++L Sbjct: 8 LFVEDEPLVRQATAQSLELAGFSVLALPTAEAALPHLSADFPGVLVTDVRLPGASGLELL 67 Query: 71 ARVVAIDHDLPVIVVTGHGDVGMAVEAMRAGAYDFVEKPFSSDTLLEIALRAQEKRNLVL 130 +PVI+VTGHGD+ MAV+AMR GAYDF+EKPF +D L E RA E+R L L Sbjct: 68 HHCRNAAPGVPVILVTGHGDITMAVQAMREGAYDFIEKPFGADRLTETVRRAIERRGLEL 127 Query: 131 ENRRLREAWAHDPELPPLVGQSPAIERVRTLIRSLGPADVDVLINGQTGTGKEVVARQLH 190 EN+ LR A ++G+S AI++VR L+ ++ DV V+ING+TGTGKE+VAR LH Sbjct: 128 ENQALRRELAGSAAGTRIIGRSHAIDQVRGLVANVAATDVPVMINGETGTGKELVARSLH 187 Query: 191 AASGR-KGPFVALNCGALPETVFESEIFGHEPGAFTGAQKRRIGKLEYANGGTLFLDEIE 249 A S R GPF+ALNCGA+PE++FESE+FGHE GAFTGA KRRIGKLE+A+GGTLFLDEIE Sbjct: 188 ALSNRADGPFIALNCGAVPESIFESEMFGHEAGAFTGAGKRRIGKLEHASGGTLFLDEIE 247 Query: 250 SMPLALQVKLLRVLQERRLERLGGNESVAIDCRVVAASKADLLKLAAEGQFREDLYYRIG 309 SMPLALQVKLLRVLQE LERLG N SV ID R+VAA+K D+ L A+G FR+DLYYR+ Sbjct: 248 SMPLALQVKLLRVLQEGTLERLGSNASVKIDVRIVAAAKGDMDALVAQGVFRQDLYYRLN 307 Query: 310 VVAIDLPALNQRREDIALLLAHFCQAAAVRYRRESPAWSAAQMQQWQQRDWPGNVRELRN 369 VV I LP L +RREDI L HF AAVRY+R +P S +Q Q QR WPGNVRELRN Sbjct: 308 VVTIALPPLRERREDIVPLFEHFMLVAAVRYQRPAPILSESQRQALAQRPWPGNVRELRN 367 Query: 370 FADRWVLGVEQMAASAVSSAVPVLSS-LPEQVEQFEAGLIAAALKDSEGSVAVAAERLGI 428 ADR VLGV + S ++A P S+ L E++E FE +IA AL + G+V+ AA+ L + Sbjct: 368 AADRLVLGVPEGGQSGATTAAPDESAPLRERMEHFERAVIADALARTGGAVSQAADLLQV 427 Query: 429 PKKTLYDKIRKYQL 442 K TLYDKI++Y L Sbjct: 428 GKATLYDKIKRYGL 441