BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0011.p (222 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J289.1 D8J289_HERSS Response regulator consisting of a CheY-li... 448 e-124 B2TEA1.1 B2TEA1_BURPP Two component transcriptional regulator, w... 310 1e-82 D5NQW0.1 D5NQW0_9BURK Two component transcriptional regulator, w... 309 2e-82 Q13KD8.1 Q13KD8_BURXL Two component transcriptional regulator, w... 309 2e-82 D5WJP9.1 D5WJP9_BURSC Two component transcriptional regulator, w... 306 1e-81 B1FUG2.1 B1FUG2_9BURK Two component transcriptional regulator, w... 306 2e-81 E8YVQ2.1 E8YVQ2_9BURK Two component transcriptional regulator, w... 304 5e-81 B5WIW8.1 B5WIW8_9BURK Two component transcriptional regulator, w... 304 5e-81 B2JP78.1 B2JP78_BURP8 Two component transcriptional regulator, w... 303 1e-80 D8NUG8.1 D8NUG8_RALSO Putative response regulator, CheY family 293 1e-77 >D8J289.1 D8J289_HERSS Response regulator consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain protein Length = 222 Score = 448 bits (1152), Expect = e-124, Method: Compositional matrix adjust. Identities = 222/222 (100%), Positives = 222/222 (100%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK Sbjct: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT Sbjct: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS Sbjct: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD Sbjct: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 >B2TEA1.1 B2TEA1_BURPP Two component transcriptional regulator, winged helix family Length = 225 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 148/222 (66%), Positives = 183/222 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ ADQ+LR +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDTVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA+E+ CG+L +D +TRQF + G L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 121 PSKASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+++ Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKE 222 >D5NQW0.1 D5NQW0_9BURK Two component transcriptional regulator, winged helix family Length = 296 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 148/222 (66%), Positives = 183/222 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ ADQ+LR +YDV+LLDL LPKL GK Sbjct: 72 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 131 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 132 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 191 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA+E+ CG+L +D +TRQF + G L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 192 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 251 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+++ Sbjct: 252 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKE 293 >Q13KD8.1 Q13KD8_BURXL Two component transcriptional regulator, winged helix family Length = 225 Score = 309 bits (791), Expect = 2e-82, Method: Compositional matrix adjust. Identities = 148/222 (66%), Positives = 183/222 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ ADQ+LR +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADQLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA+E+ CG+L +D +TRQF + G L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 121 PSKASEVVCGDLAFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+++ Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKE 222 >D5WJP9.1 D5WJP9_BURSC Two component transcriptional regulator, winged helix family Length = 225 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 148/222 (66%), Positives = 183/222 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ AD++LR +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDEADRLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA+E+ CG+L +D +TRQF + G L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 121 PSKASEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+R+ Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKRE 222 >B1FUG2.1 B1FUG2_9BURK Two component transcriptional regulator, winged helix family Length = 225 Score = 306 bits (783), Expect = 2e-81, Method: Compositional matrix adjust. Identities = 146/222 (65%), Positives = 183/222 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ AD++L+ +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDAADRLLQSNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA+E+ CG+L +D +TRQF + G L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 121 PSKASEVVCGDLTFDIDTRQFTLKGAPLNVTPRERSVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+++ Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKE 222 >E8YVQ2.1 E8YVQ2_9BURK Two component transcriptional regulator, winged helix family Length = 225 Score = 304 bits (779), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 146/222 (65%), Positives = 184/222 (82%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP L+HWL ++L++ F +D DG+ AD++L+ +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLSHWLAKMLEQEAFALDAVQDGDSADRLLQTNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+RELVARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELVARIKVAIRRQS 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA+E+ CG+L +D +TRQF + G+ L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 121 PSKASEVVCGDLAFDIDTRQFTLKGMPLNVTPRERTVLETLILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+++ Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKE 222 >B5WIW8.1 B5WIW8_9BURK Two component transcriptional regulator, winged helix family Length = 225 Score = 304 bits (779), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 147/222 (66%), Positives = 182/222 (81%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP LAHWL ++L++ F +D DG+ AD++LR +YDV+LLDL LPKL GK Sbjct: 1 MKLLLIEDNPTLAHWLAKMLEQEAFALDAVQDGDEADRLLRTNHYDVILLDLNLPKLSGK 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PV+ILTASGSIDEKVE LGAGADDYLVKPFE+REL+ARIKV +RRQ+ Sbjct: 61 NVLRRLRQRGDATPVLILTASGSIDEKVELLGAGADDYLVKPFEVRELIARIKVAIRRQS 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P KA E+ CG+L +D +TRQF + G L + RE VLE LILR GKTV+K AL+ +F+ Sbjct: 121 PSKAGEVVCGDLSFDIDTRQFTLKGAPLNVTPRERSVLEALILRLGKTVTKPALVDAIFT 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 L++EPS DA+E+YISRLRKKLD S AAI+TLRGLGYLLR+++ Sbjct: 181 LADEPSEDAVEIYISRLRKKLDGSSAAIVTLRGLGYLLRKKE 222 >B2JP78.1 B2JP78_BURP8 Two component transcriptional regulator, winged helix family Length = 237 Score = 303 bits (777), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 146/222 (65%), Positives = 178/222 (80%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDNP L+HWL ++L++ F +D DGE ADQ+L YDVVLLDL LP+L GK Sbjct: 13 MKLLLIEDNPTLSHWLARMLEQDAFALDTVQDGEAADQLLSMNRYDVVLLDLNLPRLSGK 72 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 NVLRRLR+R + PVMILTASGSIDEKVE LGAGADDYLVKPFE+REL+AR+KV++RRQ+ Sbjct: 73 NVLRRLRQRGDATPVMILTASGSIDEKVELLGAGADDYLVKPFEVRELIARVKVMIRRQS 132 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 A E+ CG+L +D +TRQF + GV L + RE VLE LILR GKTVSK ALM +F+ Sbjct: 133 ASTANEVSCGDLAFDIDTRQFTLKGVPLNVTPRERSVLETLILRMGKTVSKAALMDSIFT 192 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLRQRD 222 ++PS DA+E+Y+SRLRKKLD S AAI+TLRGLGYLLR++D Sbjct: 193 HDDQPSEDALEIYVSRLRKKLDGSSAAIVTLRGLGYLLRKKD 234 >D8NUG8.1 D8NUG8_RALSO Putative response regulator, CheY family Length = 224 Score = 293 bits (750), Expect = 1e-77, Method: Compositional matrix adjust. Identities = 145/219 (66%), Positives = 173/219 (78%) Query: 1 MKLLLIEDNPQLAHWLEQILKEHKFKVDIAADGEIADQVLRDENYDVVLLDLMLPKLHGK 60 MKLLLIEDN LA WL + L+ +F VD A+DGE AD +L ++YDVVLLDL LP L G+ Sbjct: 1 MKLLLIEDNAPLAQWLSEALRRAQFTVDHASDGESADTLLLTQHYDVVLLDLQLPSLSGR 60 Query: 61 NVLRRLRERHNGVPVMILTASGSIDEKVECLGAGADDYLVKPFEIRELVARIKVLVRRQT 120 VL+RLR+R N VPVMILTASG ID+KV CLGAGADDYLVKPFEIREL+ARI+VLVRR T Sbjct: 61 AVLQRLRDRRNAVPVMILTASGGIDDKVACLGAGADDYLVKPFEIRELIARIQVLVRRNT 120 Query: 121 PDKAAEIHCGNLVYDSNTRQFAVGGVTLALPAREHDVLEVLILRQGKTVSKTALMKGVFS 180 P A E+ CG+L Y S +R FA+ G L LPAREH VLE+L+L+ G+TVSK AL+ GVF Sbjct: 121 PANAVELQCGDLSYHSGSRTFALAGRPLVLPAREHTVLEILMLKLGRTVSKPALVNGVFG 180 Query: 181 LSEEPSADAIEVYISRLRKKLDRSGAAIMTLRGLGYLLR 219 L ++ S +AIE+YI RLRKKL+ S A I+TLRGLGYLLR Sbjct: 181 LEDDASPEAIEIYIHRLRKKLEHSAATIVTLRGLGYLLR 219