BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0079.p (154 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IT07.1 D8IT07_HERSS Flagellin-specific chaperone FliS protein 312 1e-83 F1W4A9.1 F1W4A9_9BURK Flagellar biosynthesis protein fliS 177 4e-43 A6SXZ0.1 A6SXZ0_JANMA FliS flagellar protein 163 8e-39 A4G683.1 A4G683_HERAR Flagellar protein 155 2e-36 Q1QVX5.1 Q1QVX5_CHRSD Flagellar protein FliS 150 9e-35 D4GH03.1 D4GH03_PANAM FliS 148 3e-34 F2EWD4.1 F2EWD4_PANAN Flagellar protein FliS 148 3e-34 A4JIN5.1 A4JIN5_BURVG Flagellar protein FliS 147 5e-34 Q66BQ9.1 Q66BQ9_YERPS Flagellar protein FliS 146 8e-34 B2K178.1 B2K178_YERPB Flagellar protein FliS 146 8e-34 >D8IT07.1 D8IT07_HERSS Flagellin-specific chaperone FliS protein Length = 154 Score = 312 bits (799), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 153/154 (99%), Positives = 153/154 (99%) Query: 1 MFGTMKRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESI 60 MFGTMKRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESI Sbjct: 1 MFGTMKRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESI 60 Query: 61 TKAILIVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDI 120 TKAILIVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDI Sbjct: 61 TKAILIVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDI 120 Query: 121 RSAWEQIGPNGQPTSMQAAPAPTAAFSQPSFAKA 154 RSAWEQIGPNGQP SMQAAPAPTAAFSQPSFAKA Sbjct: 121 RSAWEQIGPNGQPASMQAAPAPTAAFSQPSFAKA 154 >F1W4A9.1 F1W4A9_9BURK Flagellar biosynthesis protein fliS Length = 156 Score = 177 bits (449), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 83/128 (64%), Positives = 104/128 (81%) Query: 1 MFGTMKRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESI 60 MFG RGANAYAN+ +ETGV +ASPHKLI MLFDGALVA+A ++ M +GNI+ KG+SI Sbjct: 1 MFGKSSRGANAYANVSIETGVTSASPHKLIVMLFDGALVAVATAEQQMKDGNIQAKGKSI 60 Query: 61 TKAILIVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDI 120 +KAI I+DNGLRASL+K+VGG++A +LD+LY YMS RL AN N P IL EVH+LL D+ Sbjct: 61 SKAISIIDNGLRASLDKKVGGQIAESLDALYAYMSNRLLVANLKNQPEILQEVHTLLMDL 120 Query: 121 RSAWEQIG 128 +SAW+ IG Sbjct: 121 KSAWDAIG 128 >A6SXZ0.1 A6SXZ0_JANMA FliS flagellar protein Length = 162 Score = 163 bits (412), Expect = 8e-39, Method: Compositional matrix adjust. Identities = 81/153 (52%), Positives = 109/153 (71%), Gaps = 1/153 (0%) Query: 1 MFGTMKRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESI 60 MFG+ + GANAYA +G+ETGV+AA+PHKLI MLF+G +A+ + M GNI +KG++I Sbjct: 1 MFGSPQSGANAYAKVGMETGVIAANPHKLIIMLFEGVQIALNNALQQMQAGNIPEKGKAI 60 Query: 61 TKAILIVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDI 120 +K ILI++NGLRASL+K VGGE+A+NLD+LYEYM RL AN N+ I+ EV +LL DI Sbjct: 61 SKGILIIENGLRASLDKSVGGEIAINLDALYEYMVGRLLLANLNNDAEIIHEVQTLLNDI 120 Query: 121 RSAWEQIGP-NGQPTSMQAAPAPTAAFSQPSFA 152 +SAWE+I P +P + P A S + A Sbjct: 121 KSAWEEIAPKTAEPAPVTGLPGQIQASSYDALA 153 >A4G683.1 A4G683_HERAR Flagellar protein Length = 161 Score = 155 bits (391), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 78/129 (60%), Positives = 102/129 (79%) Query: 1 MFGTMKRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESI 60 MFG+MK GA+AYA +G+ETGV+AA+PHKLI MLF+G +A+ ++M G+I +KG++I Sbjct: 1 MFGSMKNGASAYAKVGIETGVIAANPHKLIVMLFEGVQIALNQAAQHMQSGHIAEKGKAI 60 Query: 61 TKAILIVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDI 120 +KAI I+DNGLRASL+K GGE+A+NLDSLYEYMS RL AN N+ A+L EV +LL DI Sbjct: 61 SKAISIIDNGLRASLDKSTGGEIAINLDSLYEYMSNRLLLANLNNDAAVLQEVQTLLHDI 120 Query: 121 RSAWEQIGP 129 + AWE I P Sbjct: 121 KGAWESIVP 129 >Q1QVX5.1 Q1QVX5_CHRSD Flagellar protein FliS Length = 132 Score = 150 bits (378), Expect = 9e-35, Method: Compositional matrix adjust. Identities = 74/127 (58%), Positives = 95/127 (74%) Query: 4 TMKRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESITKA 63 M RGA AYA +GVE+GV++ASPH+LI MLFDGA AI K +M +GNI KG+SI+KA Sbjct: 2 NMMRGAQAYARVGVESGVMSASPHRLIVMLFDGAQAAIRAAKLHMEDGNIAAKGQSISKA 61 Query: 64 ILIVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDIRSA 123 + IV+NGL A+L++E GGELA L+SLY+Y+ R L +AN N+ A LDE LL+DI SA Sbjct: 62 MDIVNNGLAAALDREQGGELAERLESLYDYVVRLLMKANRHNDQAALDEAARLLDDIGSA 121 Query: 124 WEQIGPN 130 W +IGP Sbjct: 122 WREIGPQ 128 >D4GH03.1 D4GH03_PANAM FliS Length = 139 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 71/128 (55%), Positives = 93/128 (72%) Query: 6 KRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESITKAIL 65 K G AYA +GVE+ VL+ASPH+L+ MLFDGAL A+ + +G+I KG +++KAI Sbjct: 7 KSGTQAYAQVGVESAVLSASPHQLVVMLFDGALSAMKKAAILIEQGDIPGKGNALSKAIN 66 Query: 66 IVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDIRSAWE 125 I+ NGLRA LN EVGGE++ NLD+LYEYM+RRL +AN N+ + EV LL +I AW+ Sbjct: 67 IITNGLRAGLNHEVGGEISANLDNLYEYMTRRLLQANLNNDVEAIAEVEGLLNNIADAWK 126 Query: 126 QIGPNGQP 133 QIGPN QP Sbjct: 127 QIGPNYQP 134 >F2EWD4.1 F2EWD4_PANAN Flagellar protein FliS Length = 139 Score = 148 bits (373), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 71/128 (55%), Positives = 93/128 (72%) Query: 6 KRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESITKAIL 65 K G AYA +GVE+ VL+ASPH+L+ MLFDGAL A+ + +G+I KG +++KAI Sbjct: 7 KSGTQAYAQVGVESAVLSASPHQLVVMLFDGALSAMKKAAILIEQGDIPGKGNALSKAIN 66 Query: 66 IVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDIRSAWE 125 I+ NGLRA LN EVGGE++ NLD+LYEYM+RRL +AN N+ + EV LL +I AW+ Sbjct: 67 IITNGLRAGLNHEVGGEISANLDNLYEYMTRRLLQANLNNDVEAIAEVEGLLNNIADAWK 126 Query: 126 QIGPNGQP 133 QIGPN QP Sbjct: 127 QIGPNYQP 134 >A4JIN5.1 A4JIN5_BURVG Flagellar protein FliS Length = 144 Score = 147 bits (371), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 71/130 (54%), Positives = 94/130 (72%) Query: 1 MFGTMKRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESI 60 MF GA+AYA +GVETGV+ ASPH+LI ML+ GA AIALG+ ++ +GN+ +GE+I Sbjct: 1 MFSPGHAGASAYARVGVETGVMGASPHRLIAMLYQGARQAIALGRMHLQQGNVAARGEAI 60 Query: 61 TKAILIVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDI 120 KAI IV++GL+ASLN++VGGE+A LD+LY YM RRL +ANA + A+L EV LL + Sbjct: 61 GKAISIVESGLQASLNRDVGGEIAARLDALYTYMGRRLLQANAQGSDAMLVEVDGLLATL 120 Query: 121 RSAWEQIGPN 130 AW I P Sbjct: 121 EEAWTGIAPE 130 >Q66BQ9.1 Q66BQ9_YERPS Flagellar protein FliS Length = 132 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 71/129 (55%), Positives = 95/129 (73%) Query: 6 KRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESITKAIL 65 + G+ AYA +G+E+GV++ASPH+LI MLFDGA A+ + M++GNI KG +I+KAI Sbjct: 4 RSGSQAYAQVGLESGVMSASPHQLIVMLFDGAQSALIRARILMSQGNIPAKGAAISKAID 63 Query: 66 IVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDIRSAWE 125 I++NGL A LN E GGE+A NL +LY+YMSRRL AN N+ ++EV +LLE+I AW Sbjct: 64 IINNGLSAGLNLEKGGEIAENLSALYDYMSRRLLYANLHNDEQAINEVSALLENIADAWR 123 Query: 126 QIGPNGQPT 134 QIGPN QP Sbjct: 124 QIGPNYQPN 132 >B2K178.1 B2K178_YERPB Flagellar protein FliS Length = 132 Score = 146 bits (369), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 71/129 (55%), Positives = 95/129 (73%) Query: 6 KRGANAYANIGVETGVLAASPHKLITMLFDGALVAIALGKKYMAEGNIKDKGESITKAIL 65 + G+ AYA +G+E+GV++ASPH+LI MLFDGA A+ + M++GNI KG +I+KAI Sbjct: 4 RSGSQAYAQVGLESGVMSASPHQLIVMLFDGAQSALIRARILMSQGNIPAKGAAISKAID 63 Query: 66 IVDNGLRASLNKEVGGELALNLDSLYEYMSRRLFEANATNNPAILDEVHSLLEDIRSAWE 125 I++NGL A LN E GGE+A NL +LY+YMSRRL AN N+ ++EV +LLE+I AW Sbjct: 64 IINNGLSAGLNLEKGGEIAENLSALYDYMSRRLLYANLHNDEQAINEVSALLENIADAWR 123 Query: 126 QIGPNGQPT 134 QIGPN QP Sbjct: 124 QIGPNYQPN 132