BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0075.p (251 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IT03.1 D8IT03_HERSS Flagellar brake protein YcgR 509 e-142 A6SXY6.1 YCGR_JANMA Flagellar brake protein YcgR 254 8e-66 A4G687.1 A4G687_HERAR Flagellar brake protein YcgR 244 7e-63 F1W4B3.1 F1W4B3_9BURK Putative uncharacterized protein 207 1e-51 C7RPL6.1 C7RPL6_ACCPU Flagellar brake protein YcgR 1 161 9e-38 C4KAR7.1 C4KAR7_THASP Flagellar brake protein YcgR 1 151 7e-35 A1K922.1 YCGR_AZOSB Flagellar brake protein YcgR 146 3e-33 Q3SIH8.1 YCGR_THIDA Flagellar brake protein YcgR 142 5e-32 Q8P9J1.1 Q8P9J1_XANCP Flagellar brake protein YcgR 138 7e-31 Q4UUA3.1 Q4UUA3_XANC8 Flagellar brake protein YcgR 138 7e-31 >D8IT03.1 D8IT03_HERSS Flagellar brake protein YcgR Length = 251 Score = 509 bits (1310), Expect = e-142, Method: Compositional matrix adjust. Identities = 250/251 (99%), Positives = 250/251 (99%) Query: 1 MANQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAI 60 MANQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAI Sbjct: 1 MANQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAI 60 Query: 61 TLDAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRL 120 TLDAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRL Sbjct: 61 TLDAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRL 120 Query: 121 QRREFFRIPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVI 180 QRREFFRIPTPIAKPLRCTFRITQ DGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVI Sbjct: 121 QRREFFRIPTPIAKPLRCTFRITQSDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVI 180 Query: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLE 240 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLE Sbjct: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLE 240 Query: 241 REQNAKASGMM 251 REQNAKASGMM Sbjct: 241 REQNAKASGMM 251 >A6SXY6.1 YCGR_JANMA Flagellar brake protein YcgR Length = 252 Score = 254 bits (649), Expect = 8e-66, Method: Compositional matrix adjust. Identities = 117/250 (46%), Positives = 176/250 (70%), Gaps = 1/250 (0%) Query: 1 MANQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAI 60 + + E DD +P+RVRSRRE+I+LL S+ E+NQL+ ++I G+++++TSIL +D D + Sbjct: 3 LVSDHENDDMNPFRVRSRREVIALLRSIGERNQLVRMVINHGADTIVTSILNIDETNDTV 62 Query: 61 TLDAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRL 120 LD AP+A++N+ ++ S ++ FE + +IRI F A Y+ PA + +P S+VRL Sbjct: 63 LLDCAPTAIMNQRVLDSNKLSFETVLENIRILFNSPSAESCMYENLPAFVIPLPTSVVRL 122 Query: 121 QRREFFRIPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVI 180 QRREF+R+PTP+ P+ CT T +G + V T L+NIS GGV + DEKKLLSTT G+ Sbjct: 123 QRREFYRVPTPLTAPVSCTVPYTT-EGVTIEVATTLHNISGGGVSLVDEKKLLSTTIGLT 181 Query: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLE 240 Y++C++ L + L++V LQVR+ E +TNGK +NR GC+FI+ LA +Q++ITK+E Sbjct: 182 YQNCKIVLPGSGLITVALQVRNVLELTLTNGKSINRIGCEFINPSNGTLATVQKYITKIE 241 Query: 241 REQNAKASGM 250 REQNAKA+G+ Sbjct: 242 REQNAKATGL 251 >A4G687.1 A4G687_HERAR Flagellar brake protein YcgR Length = 251 Score = 244 bits (624), Expect = 7e-63, Method: Compositional matrix adjust. Identities = 113/250 (45%), Positives = 179/250 (71%), Gaps = 2/250 (0%) Query: 1 MANQDEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAI 60 +A++ E DD +PYRV SRRE+I+LL S+ E+NQL+ ++I G+++++TSIL++D + + Sbjct: 3 LASEYENDDLNPYRVNSRREVIALLRSIGERNQLVRMLINHGNDTIVTSILQIDETANTV 62 Query: 61 TLDAAPSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRL 120 LD AP+A++N+ +++S+++ FE + +IRI F A+ Y+ PA + +P S++RL Sbjct: 63 LLDCAPTAIMNQRVLNSEKLSFETVLENIRILFNSPAAQSCIYENLPAFIIPLPTSVIRL 122 Query: 121 QRREFFRIPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVI 180 QRREF+R+ TP+ P+ CT + D + VV L+NIS GG+ + DEKKL+ +TPG I Sbjct: 123 QRREFYRVSTPVTNPVYCTIPVKTED-QIIPVVVPLHNISGGGLSVVDEKKLIDSTPGRI 181 Query: 181 YEDCQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLE 240 YE+C+L+L +V++ LQVR+ E +TNGK ++R GC F+D LAA+Q++ITKLE Sbjct: 182 YENCRLDLPGG-VVTLALQVRNQLEVTLTNGKSIHRLGCAFVDPSNGALAAVQKYITKLE 240 Query: 241 REQNAKASGM 250 R+QNAKA+G+ Sbjct: 241 RDQNAKATGL 250 >F1W4B3.1 F1W4B3_9BURK Putative uncharacterized protein Length = 255 Score = 207 bits (527), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 101/243 (41%), Positives = 156/243 (64%), Gaps = 3/243 (1%) Query: 9 DDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAAPSA 68 D SP++V SRREI +L+ ++ ++ QL+ L+I+ ++ +TS+L VD + LD Sbjct: 14 DLSPFKVNSRREITALMRALCDQRQLIRLLIEDSGDAGVTSVLHVDEANGNLILDVPADT 73 Query: 69 MLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREFFRI 128 + ++ S+ I FE + IRI F + EY G PAL + +P S++RLQRREF+R+ Sbjct: 74 SVTRRLLDSENISFETVLERIRILFFSTRVEECEYGGLPALSIALPASMIRLQRREFYRV 133 Query: 129 PTPIAKPLRCTFRITQPDGSFVTVVTM-LNNISAGGVGITDEKKLLSTTPGVIYEDCQLE 187 TP++ PLRCT +I DG V VT+ L N+S GG+ I D++ L T G IY CQ+ Sbjct: 134 ATPLSTPLRCTIQIV--DGETVQPVTLSLLNVSGGGITIIDDQHQLDHTVGRIYHGCQIY 191 Query: 188 LGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQNAKA 247 L +T+V+ L++R+ + ++ NGK +R GC F D+P+ +LA IQR+IT+LEREQNA+ Sbjct: 192 LPGSTVVTTALEIRNSIDLRLENGKHTHRLGCLFHDLPKAMLAVIQRYITRLEREQNARN 251 Query: 248 SGM 250 +G+ Sbjct: 252 NGI 254 >C7RPL6.1 C7RPL6_ACCPU Flagellar brake protein YcgR 1 Length = 265 Score = 161 bits (407), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 85/247 (34%), Positives = 141/247 (57%), Gaps = 1/247 (0%) Query: 5 DEIDDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDA 64 ++ DD Y +RSR EI+++L S+++K L+S GS ++TS+L+VD + LD Sbjct: 18 EQPDDYEQYLLRSRPEIVAVLRSLVQKRALVSAYFNRGSSFLLTSVLQVDTGSGQLVLDC 77 Query: 65 APSAMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRRE 124 N + + Q+ A+ + ++I F + + + GR A +P+ ++RLQRRE Sbjct: 78 GREEATNRQALLADQLILTAMVDKVKIQFTLSKLAETQSAGRAAFSAALPDKVLRLQRRE 137 Query: 125 FFRIPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTP-GVIYED 183 +FR+ TPIAKP++ + +PDGS + V L +IS GGVG+ L + P G + + Sbjct: 138 YFRLSTPIAKPVKFVTTLKRPDGSALIVEASLLDISGGGVGLMASPALAALLPRGGMLTE 197 Query: 184 CQLELGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQ 243 C++ L D L+ L VR+ + G R GC+FI +P ++ +QR+IT++ERE+ Sbjct: 198 CRMTLPDEGLLVANLCVRNKFDVTTRGGSRYVRVGCEFIALPGARMSMVQRYITRVERER 257 Query: 244 NAKASGM 250 A+ SGM Sbjct: 258 KARLSGM 264 >C4KAR7.1 C4KAR7_THASP Flagellar brake protein YcgR 1 Length = 259 Score = 151 bits (382), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 81/244 (33%), Positives = 136/244 (55%) Query: 8 DDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAAPS 67 DD++ Y +R REI++++ +++ L+S + G+ESV+++++ V D ++ LD + Sbjct: 16 DDEAKYVLRDAREILAIVRNLLGARALVSARLAPGNESVLSTLVAVAEDGTSLLLDGSAD 75 Query: 68 AMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREFFR 127 + N+ + + +D + +RI F + G R +E G P + +PE+L+RLQRREF+R Sbjct: 76 PLQNQRMERADALDCVTQLDKVRIQFLLRGQRLVEDGGSPGFRAPLPEALLRLQRREFYR 135 Query: 128 IPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVIYEDCQLE 187 + TPI++ + CT + + DGS + +IS GGV I + PG + D L Sbjct: 136 LQTPISEGVSCTLALPRVDGSRREAELRILDISGGGVAIAVPPVGVHFEPGTEFPDSLLR 195 Query: 188 LGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQNAKA 247 L D +S +L VR+ G V R GC+F D+PR AIQR+I + ER +NA+ Sbjct: 196 LPDTAPISARLVVRNLFRITRRGGAEVLRAGCEFADLPRGAEDAIQRYILRAERTRNARE 255 Query: 248 SGMM 251 G + Sbjct: 256 RGRL 259 >A1K922.1 YCGR_AZOSB Flagellar brake protein YcgR Length = 259 Score = 146 bits (369), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 74/244 (30%), Positives = 138/244 (56%) Query: 8 DDDSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAAPS 67 DD Y + REI +L +++ + L++ G +S +T+++ + D +I +DA P Sbjct: 16 DDFEKYLLYGSREIRQILQGLIDHHALITAQTVPGHQSFLTTVVALPDDGASIIIDAGPD 75 Query: 68 AMLNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREFFR 127 +N+ + +++++ + + IRI F + Y+ RPA + +P L+RLQRREF+R Sbjct: 76 EHINQRVGNAERLVCMSQLDKIRIQFDLSAPALTRYENRPAFRAPVPAQLLRLQRREFYR 135 Query: 128 IPTPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVIYEDCQLE 187 + TP+ + C + QPDG + + T + +IS GG+ + + + +E+C+L Sbjct: 136 LQTPVTHTVTCRIPLPQPDGRTLELETRVIDISGGGIAVVVPPDNVPFGADMEFENCKLT 195 Query: 188 LGDNTLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQNAKA 247 L + + V+L+VR+ NG + R GC+F+D+PR+ AIQR+I K+ER+++A+ Sbjct: 196 LPELGTIPVRLKVRNLFRLTNRNGVEMLRAGCEFVDLPRSADNAIQRYIFKVERDRSARE 255 Query: 248 SGMM 251 G + Sbjct: 256 RGRL 259 >Q3SIH8.1 YCGR_THIDA Flagellar brake protein YcgR Length = 255 Score = 142 bits (357), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 78/230 (33%), Positives = 134/230 (58%), Gaps = 3/230 (1%) Query: 13 YRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAAPSAMLNE 72 Y + SR EI+ L ++ ++ L++L + + ++TS+L V+ ++ + LD+A LN Sbjct: 22 YTLHSRAEILFQLRALQKRKVLVNLDLSESRQIIVTSVLAVNEADNTVVLDSARGDALNN 81 Query: 73 SIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREFFRIPTPI 132 ++S K +F A + + I+F++ EY+ PAL++ +P SL+RLQRRE FR+P PI Sbjct: 82 ELMSGKGAEFVAQLDGVSISFSIGAVSLCEYEKLPALRIPVPTSLIRLQRREHFRVPLPI 141 Query: 133 AKPLRCTFRITQP-DGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVIYEDCQLELGDN 191 A P++C + P + S + T L +I GGV +TD L T G + C+L L + Sbjct: 142 ANPVKCI--VPSPWEESKEQITTHLVDIGCGGVALTDIGARLGTESGRLLRGCRLLLPET 199 Query: 192 TLVSVKLQVRDCKEFKMTNGKIVNRFGCQFIDIPRTVLAAIQRFITKLER 241 +V L++R+ + ++ NG R GC+F+D+P + A +QRF+ +ER Sbjct: 200 DVVVTTLEIRNSAQIRLQNGSFQTRLGCKFVDLPNDMAAHLQRFVMNIER 249 >Q8P9J1.1 Q8P9J1_XANCP Flagellar brake protein YcgR Length = 265 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 135/244 (55%), Gaps = 4/244 (1%) Query: 10 DSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAAPSAM 69 D Y +R++R+I LL ++++ ++++ + G +V T++LEVD D+D + LD + + Sbjct: 24 DERYLLRNKRQIRGLLQQLIDQRAVVTMHVAGRDMAVPTAVLEVDEDDDCVILDGSHNDA 83 Query: 70 LNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREFFRIP 129 N +I +K + A + I F +E ++E A + +P+SL LQRRE +R+ Sbjct: 84 SNRAIEQAKYLLCYAQLERVNIRFRLETPERLERDIHVAFRATLPDSLYHLQRRESYRLE 143 Query: 130 TPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVIYEDCQLELG 189 TPI CT R G + + + +IS+GG+ ++ + P Y DC L+L Sbjct: 144 TPITDSPTCTIRQDAASGGNLNLQLRVIDISSGGLAVSLTTGMPLLDPQHTYRDCTLQLP 203 Query: 190 DNTLVSVKLQVRDCKEFKMT--NGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQNAKA 247 D+ +++ L V C ++KMT NG R G QF D+PR IQR+I +++R++NA+ Sbjct: 204 DSAPIALPLTV--CSQYKMTLPNGSEGFRVGMQFSDLPRGADETIQRYIFRVDRQRNARK 261 Query: 248 SGMM 251 SG+ Sbjct: 262 SGVF 265 >Q4UUA3.1 Q4UUA3_XANC8 Flagellar brake protein YcgR Length = 265 Score = 138 bits (347), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 78/244 (31%), Positives = 135/244 (55%), Gaps = 4/244 (1%) Query: 10 DSPYRVRSRREIISLLTSMMEKNQLLSLMIKGGSESVITSILEVDADEDAITLDAAPSAM 69 D Y +R++R+I LL ++++ ++++ + G +V T++LEVD D+D + LD + + Sbjct: 24 DERYLLRNKRQIRGLLQQLIDQRAVVTMHVAGRDMAVPTAVLEVDEDDDCVILDGSHNDA 83 Query: 70 LNESIVSSKQIDFEAIYNSIRITFAVEGARQIEYQGRPALQVDIPESLVRLQRREFFRIP 129 N +I +K + A + I F +E ++E A + +P+SL LQRRE +R+ Sbjct: 84 SNRAIEQAKYLLCYAQLERVNIRFRLETPERLERDIHVAFRATLPDSLYHLQRRESYRLE 143 Query: 130 TPIAKPLRCTFRITQPDGSFVTVVTMLNNISAGGVGITDEKKLLSTTPGVIYEDCQLELG 189 TPI CT R G + + + +IS+GG+ ++ + P Y DC L+L Sbjct: 144 TPITDSPTCTIRQDAASGGNLNLQLRVIDISSGGLAVSLTTGMPLLDPQHTYRDCTLQLP 203 Query: 190 DNTLVSVKLQVRDCKEFKMT--NGKIVNRFGCQFIDIPRTVLAAIQRFITKLEREQNAKA 247 D+ +++ L V C ++KMT NG R G QF D+PR IQR+I +++R++NA+ Sbjct: 204 DSAPIALPLTV--CSQYKMTLPNGSEGFRVGMQFSDLPRGADETIQRYIFRVDRQRNARK 261 Query: 248 SGMM 251 SG+ Sbjct: 262 SGVF 265