BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0070.p (233 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISZ8.1 D8ISZ8_HERSS Flagellar assembly FliH protein 462 e-128 A6SXY2.1 A6SXY2_JANMA FliH flagellar biosynthesis/type III secre... 206 3e-51 Q5QCQ5.1 Q5QCQ5_HERAR Putative flagellar assembly protein FliH 196 2e-48 E6QR76.1 E6QR76_9ZZZZ Putative flagellar assembly protein FliH 195 5e-48 F1VUG4.1 F1VUG4_9BURK Flagellar assembly protein FliH 189 3e-46 Q3SIH3.1 Q3SIH3_THIDA Flagellar assembly protein FliH 167 1e-39 D7DQ17.1 D7DQ17_METS0 Flagellar assembly protein FliH/Type III s... 165 5e-39 B9TGJ2.1 B9TGJ2_RICCO Flagellar assembly protein fliH, putative 165 6e-39 Q1GZU4.1 Q1GZU4_METFK Flagellar assembly protein FliH 158 6e-37 C6WV89.1 C6WV89_METML Flagellar assembly protein FliH 153 2e-35 >D8ISZ8.1 D8ISZ8_HERSS Flagellar assembly FliH protein Length = 233 Score = 462 bits (1190), Expect = e-128, Method: Compositional matrix adjust. Identities = 229/233 (98%), Positives = 232/233 (99%) Query: 1 MRAKIIPKEEMTPYQRWELASFHDEPEPEPEPLPEEEEFLEEPPPVPQLTAEQLDAIREA 60 MRAKIIPKEEMTPYQRWELASFHDEPEPEPEPLPEEEEFLEEPPPVPQLTAEQLDAIREA Sbjct: 1 MRAKIIPKEEMTPYQRWELASFHDEPEPEPEPLPEEEEFLEEPPPVPQLTAEQLDAIREA 60 Query: 61 ARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEKMAP 120 ARQEGFAEGREHGLQAGRSEGY+AGLQQGQQE+NE+IQHFRQIAVNFSTEVSQCSEKMAP Sbjct: 61 ARQEGFAEGREHGLQAGRSEGYMAGLQQGQQEINEVIQHFRQIAVNFSTEVSQCSEKMAP 120 Query: 121 ELLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKHLG 180 ELLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKHLG Sbjct: 121 ELLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKHLG 180 Query: 181 EELAQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWLE 233 EEL QQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWLE Sbjct: 181 EELTQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWLE 233 >A6SXY2.1 A6SXY2_JANMA FliH flagellar biosynthesis/type III secretory pathway protein Length = 232 Score = 206 bits (523), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 114/238 (47%), Positives = 150/238 (63%), Gaps = 16/238 (6%) Query: 3 AKIIPKEEMTPYQRWELASFHDE-PEPEPEPLPEEEEFLEEPPPVPQLT-------AEQL 54 + +IPKE + YQRWE+ SF++E P + EP+ + L AEQ+ Sbjct: 2 SNVIPKERQSAYQRWEMTSFNEEKPIVKVEPVKDAAAELAAANAAAAAHTANIAAMAEQI 61 Query: 55 DAIREAARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQC 114 + R A EG+A G E G AG +EG V Q +QE Q QIA F TEV+Q Sbjct: 62 ENARAEAHAEGYAAGMEEGRAAGLAEGRV----QAEQEK----QTLLQIADTFGTEVAQA 113 Query: 115 SEKMAPELLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAAL 174 +E +A ++LDLALDLAK+MLKTAL RPEL++P V AI LP LQ PA L LHP+DAA+ Sbjct: 114 NELIASDMLDLALDLAKAMLKTALNVRPELIVPLVREAIHYLPTLQQPALLHLHPDDAAI 173 Query: 175 VRKHLGEELAQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWL 232 + HLG+EL+ W++ ED +DRG C+VET TNQIDATT+TRW+R+ +L K+ DWL Sbjct: 174 IASHLGDELSTAAWRVVEDPHMDRGSCRVETVTNQIDATTSTRWQRIAAALGKESDWL 231 >Q5QCQ5.1 Q5QCQ5_HERAR Putative flagellar assembly protein FliH Length = 233 Score = 196 bits (499), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 104/235 (44%), Positives = 143/235 (60%), Gaps = 7/235 (2%) Query: 1 MRAKIIPKEEMTPYQRWELASFHDEPEPEPEPLPEEEEFLEEPPPVPQLTAEQLDAIR-- 58 + + +IPKE+ + YQRWE+ SF +EP P+ + + A+ Sbjct: 2 LMSDVIPKEKQSAYQRWEMTSFGEEPAGGKASTPDTAASIAAANAAASAQMANIAAMAQQ 61 Query: 59 -EAARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEK 117 E AR + AEG GL+ GR+ G G Q +QE + RQIA F TEV+Q +E Sbjct: 62 IEDARAQAHAEGYAAGLEEGRAAGLAEGRAQAEQERLSL----RQIAETFGTEVAQANEL 117 Query: 118 MAPELLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRK 177 +A ++LDL+LDLAK+MLKTAL RPEL++P V AI LP LQ P L LHP+DAA+V Sbjct: 118 IANDMLDLSLDLAKAMLKTALNVRPELIIPLVREAIHYLPTLQQPTLLHLHPDDAAIVAV 177 Query: 178 HLGEELAQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWL 232 H+ +EL+ GW++ ED + RGGC+VE +NQIDA+ TRW+R+ SL K+ DWL Sbjct: 178 HMNDELSAVGWRVVEDTHMGRGGCRVEAVSNQIDASAPTRWQRIAASLGKESDWL 232 >E6QR76.1 E6QR76_9ZZZZ Putative flagellar assembly protein FliH Length = 217 Score = 195 bits (495), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 101/229 (44%), Positives = 139/229 (60%), Gaps = 15/229 (6%) Query: 5 IIPKEEMTPYQRWELASFHDEPEPEPEPLPEEEEFLEEPPPVPQLTA-EQLDAIREAARQ 63 +IPKE++T YQRWE+ASF D PE +P V L A E+L I E AR+ Sbjct: 1 MIPKEQLTAYQRWEMASFEDHPE--------------QPSSVAGLAASEELKVIHEQARR 46 Query: 64 EGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEKMAPELL 123 EG+ G G Q G EG +GL + + ++I I ++ E++Q ++A +LL Sbjct: 47 EGYTAGLTEGYQVGYDEGTQSGLNESRVAAQQLIAQLSLIITQYNEELAQADRQIAADLL 106 Query: 124 DLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKHLGEEL 183 LA +A +MLKT L PEL+LP ++AAI LP LQ L L+P D ALVR+HL +EL Sbjct: 107 TLATGIAHAMLKTTLPIHPELLLPVITAAIHDLPALQRNTKLSLNPGDVALVREHLHDEL 166 Query: 184 AQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWL 232 AQ GW I ED ++ GGC++E+ +NQ+DAT TRW+RL +L + LDWL Sbjct: 167 AQHGWSIVEDPQIEAGGCRIESNSNQLDATLNTRWQRLATALGQNLDWL 215 >F1VUG4.1 F1VUG4_9BURK Flagellar assembly protein FliH Length = 219 Score = 189 bits (480), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 105/233 (45%), Positives = 153/233 (65%), Gaps = 15/233 (6%) Query: 1 MRAKIIPKEEMTPYQRWELASFHDEPEPEPEPLPEEEEFLEEPPPVPQLTAEQLDAIREA 60 M IIPKE + YQRWE+ SF D P + PP+P++T E+ AIREA Sbjct: 1 MSDAIIPKERQSAYQRWEMDSFGDNR-------PSAQPQAPAAPPIPRVTIEEQAAIREA 53 Query: 61 ARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEKMAP 120 A+ +G+A G L GR+EG L+ G++E + I H RQIAV +E + E ++ Sbjct: 54 AQIKGYATG----LTDGRTEG----LRLGREEAHAEIDHLRQIAVALGSEAAIADELISV 105 Query: 121 ELLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKHLG 180 +++ LALDLA++MLKTAL+ +PELVLP V+ AI+ LP +Q PA L LHP+DA LVR+ + Sbjct: 106 DVMRLALDLAQAMLKTALEIKPELVLPIVAEAIRYLPNVQQPALLYLHPDDARLVREEMH 165 Query: 181 EELAQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWLE 233 +EL + GW+I +D+ + RGGC+++T +NQIDA+ TRW+RL ++L + WL+ Sbjct: 166 DELDKAGWRIADDSQMQRGGCRIDTASNQIDASIETRWQRLTDALGQTPGWLK 218 >Q3SIH3.1 Q3SIH3_THIDA Flagellar assembly protein FliH Length = 209 Score = 167 bits (423), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 98/233 (42%), Positives = 135/233 (57%), Gaps = 26/233 (11%) Query: 1 MRAKIIPKEEMTPYQRWELASFHDEPEP-EPEPLPEEEEFLEEPPPVPQLTAEQLDAIRE 59 M + II TP WE+ASF P +P P+ V T EQ+ AI+E Sbjct: 1 MSSCIISDVACTP---WEMASFESTPHAVKPTDYPD----------VSLPTIEQISAIQE 47 Query: 60 AARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEKMA 119 ARQEG+ QAGR+EGY AG+Q+ E + IA F+ E+++ E ++ Sbjct: 48 QARQEGY--------QAGRAEGYAAGMQEAALEATRL----GGIAEAFAGELARADETIS 95 Query: 120 PELLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKHL 179 ++LDL+LD A+++LKTAL +PEL+LP V A++ LP +Q A L LHP D LVR + Sbjct: 96 QQVLDLSLDFARAILKTALTVQPELILPIVKEAVRYLPGVQKAALLYLHPADTVLVRDKM 155 Query: 180 GEELAQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWL 232 G+ L + GW + +DA L+RG C+VET NQIDA +TRW RL +L K WL Sbjct: 156 GDHLDKLGWLLTDDAELERGSCRVETANNQIDAALSTRWHRLAAALGKDSGWL 208 >D7DQ17.1 D7DQ17_METS0 Flagellar assembly protein FliH/Type III secretion system HrpE Length = 215 Score = 165 bits (418), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 85/227 (37%), Positives = 137/227 (60%), Gaps = 16/227 (7%) Query: 6 IPKEEMTPYQRWELASFHDEPEPEPEPLPEEEEFLEEPPPVPQLTAEQLDAIREAARQEG 65 IPKE+ T Y+RWE++SF + P+++E + +E++ I E AR+E Sbjct: 3 IPKEQQTAYERWEMSSFGEGSPSVSTSRPKKKE--------DTVASEKIAQIFEVARKEA 54 Query: 66 FAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEKMAPELLDL 125 + +G + EG+ G+ + ++ E +F + +FS + + E++A + L L Sbjct: 55 YTKGMQ--------EGFAVGMAKAREYAQEEKNNFLTLMNSFSDALEKSDEQIADDALSL 106 Query: 126 ALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKHLGEELAQ 185 AL++AK+MLK L P +VLP V AI LP +Q PA + +H +DA ++R++L EE+A Sbjct: 107 ALEIAKAMLKVKLNIDPAVVLPVVMDAIHYLPYVQKPARILVHHDDAQMLREYLAEEIAS 166 Query: 186 QGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWL 232 Q W+I+ED ++RGGC VET NQIDA+ RWKR+ ++LS++ DWL Sbjct: 167 QHWQIQEDINIERGGCIVETGANQIDASNEVRWKRISDALSQKSDWL 213 >B9TGJ2.1 B9TGJ2_RICCO Flagellar assembly protein fliH, putative Length = 255 Score = 165 bits (417), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 101/257 (39%), Positives = 141/257 (54%), Gaps = 32/257 (12%) Query: 5 IIPKEEMTPYQRWELASFHDEP-------EPEPEPLPEEEEFLEEPPPVPQL-------- 49 I K+ ++RWE+ SF DE E E + E LE V + Sbjct: 3 IHSKDAQPAFKRWEMTSFGDERPSVVALREAEQREIEAENARLEAEQRVQEALQAQQEQM 62 Query: 50 -------------TAEQLDAIREAARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEI 96 T E+L+AIRE AR++G+ EG AG +E A + + + Sbjct: 63 EMGPPAPPPIAYPTVEELEAIREDARKDGYDEGH----AAGHAEATEAVRKAADAALQQE 118 Query: 97 IQHFRQIAVNFSTEVSQCSEKMAPELLDLALDLAKSMLKTALKARPELVLPTVSAAIQAL 156 +Q R +A NFS + + +A ++L+LAL LAK MLK AL +PEL+LP V AI+ L Sbjct: 119 LQQVRVLADNFSKALQDADQLIANDVLELALQLAKGMLKNALPVKPELILPIVRDAIEYL 178 Query: 157 PVLQLPASLRLHPEDAALVRKHLGEELAQQGWKIEEDALLDRGGCQVETRTNQIDATTAT 216 P LQ PA L LHP+DA VR LGEEL + GW++ ED + RGGC+V+T +N IDA+ A Sbjct: 179 PALQQPALLVLHPDDAPTVRAGLGEELDKGGWRVVEDPSVGRGGCKVDTASNTIDASAAA 238 Query: 217 RWKRLGESLSKQLDWLE 233 RW+RL +L K++DWL+ Sbjct: 239 RWQRLSHALGKEVDWLD 255 >Q1GZU4.1 Q1GZU4_METFK Flagellar assembly protein FliH Length = 226 Score = 158 bits (400), Expect = 6e-37, Method: Compositional matrix adjust. Identities = 92/232 (39%), Positives = 134/232 (57%), Gaps = 10/232 (4%) Query: 1 MRAKIIPKEEMTPYQRWELASFHDEPEPEPEPLPEEEEFLEEPPPVPQLTAEQLDAIREA 60 M +IPKE+ T YQRWE+ASF EP P P V Q + E A+ EA Sbjct: 1 MSNVVIPKEKQTAYQRWEMASF------AEEPSPAAAAPTPAAPQVVQESEEDRKALLEA 54 Query: 61 ARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEKMAP 120 ++ EG + GLQ +G+ G+ +V + Q ++ + + E ++ Sbjct: 55 ELEQARREGYKIGLQ----QGFDTGIADAAAQVEQDRQRLLELLGSMEKALKTADEAISE 110 Query: 121 ELLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKHLG 180 +LL LALD+AK+M+K LK P ++LP V +I LP +Q PA L +HP+DA +V+K+L Sbjct: 111 QLLVLALDIAKAMVKDRLKVNPAIILPIVQESIHYLPAVQKPARLVVHPDDAIIVKKYLQ 170 Query: 181 EELAQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWL 232 EE+A W I ED+ ++RGGC VET NQIDA+ TRWKR+ ++LS+ DW+ Sbjct: 171 EEMADSHWHIHEDSSIERGGCMVETGDNQIDASNGTRWKRICDALSQHNDWI 222 >C6WV89.1 C6WV89_METML Flagellar assembly protein FliH Length = 224 Score = 153 bits (387), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 83/232 (35%), Positives = 131/232 (56%), Gaps = 20/232 (8%) Query: 6 IPKEEMTPYQRWELASFHDEPEPEPEPL-----PEEEEFLEEPPPVPQLTAEQLDAIREA 60 IPKE+ + Y+RWE+ASF + + P+++E VP + + EA Sbjct: 6 IPKEQQSAYERWEMASFSELGHAHGGGMVAASQPKKKE-------VPSANPADVALVFEA 58 Query: 61 ARQEGFAEGREHGLQAGRSEGYVAGLQQGQQEVNEIIQHFRQIAVNFSTEVSQCSEKMAP 120 R++ + +G + EG+ AG+ Q ++ F + FS + E++A Sbjct: 59 TRKDAYNKGMQ--------EGFAAGMAQAKELAQAERAQFLALMNAFSHALESSDEQIAE 110 Query: 121 ELLDLALDLAKSMLKTALKARPELVLPTVSAAIQALPVLQLPASLRLHPEDAALVRKHLG 180 ++L LALD+AKSMLK L +++LP V AI LP +Q PA + +H +D L+R+H+ Sbjct: 111 DVLSLALDIAKSMLKVKLNVDKKVLLPIVLDAIHYLPQIQRPARILVHHDDMHLLREHMA 170 Query: 181 EELAQQGWKIEEDALLDRGGCQVETRTNQIDATTATRWKRLGESLSKQLDWL 232 +E+A W+I ED+ ++RGGC VET N +DAT A RWKR+ E+L++ DWL Sbjct: 171 DEIANDHWQIHEDSSIERGGCLVETGANHVDATNAMRWKRITEALAQSNDWL 222