BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0067.p         (359 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ISZ5.1 D8ISZ5_HERSS Flagellar hook-length control protein           475   e-132

>D8ISZ5.1 D8ISZ5_HERSS Flagellar hook-length control protein
          Length = 431

 Score =  475 bits (1223), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 248/253 (98%), Positives = 249/253 (98%)

Query: 1   MNTSLPLLNVITGSQAATGARSANPADSFSADVPFNQVLNSQVSTRNQQNPSQDKPQAAQ 60
           MNTSLPLLNVITGSQAATGARSANPADSFSADVPFNQVLNSQVSTRNQQNPSQDKPQAAQ
Sbjct: 1   MNTSLPLLNVITGSQAATGARSANPADSFSADVPFNQVLNSQVSTRNQQNPSQDKPQAAQ 60

Query: 61  EQQPAAPSQPTQGASSAKASAANGSEQKQDSAKDEDKDSDDTATQASAELLALVANIAQN 120
           EQQPAAPSQPTQ ASSAKASAANGSEQKQDSAKDEDKDSDDTATQASAELLALVANIAQN
Sbjct: 61  EQQPAAPSQPTQSASSAKASAANGSEQKQDSAKDEDKDSDDTATQASAELLALVANIAQN 120

Query: 121 AVKPVTDGKSEHSDADLLAQAKRSGAKLSLADEQQALAGDGKDGKIDLAGLQSSLAANKG 180
           AVKPVTDGKSEH+DADLLAQAKR GA LSLADEQQALAGDGKDGKIDLAGLQSSLAANKG
Sbjct: 121 AVKPVTDGKSEHTDADLLAQAKRGGASLSLADEQQALAGDGKDGKIDLAGLQSSLAANKG 180

Query: 181 KQDGAAADLARKANAAEANPTDAHAAKGEKPAVDLGSEKAQALSKEDASTLANRAQYGKA 240
           KQDGAAADLARKANAAEANPTDAHAAKGEKPAVDLGSEKAQALSKEDASTLANRAQYGKA
Sbjct: 181 KQDGAAADLARKANAAEANPTDAHAAKGEKPAVDLGSEKAQALSKEDASTLANRAQYGKA 240

Query: 241 TTETVATAKQESP 253
           TTETVATAKQE P
Sbjct: 241 TTETVATAKQELP 253