BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0066.p         (76 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ISZ5.1 D8ISZ5_HERSS Flagellar hook-length control protein           149   1e-34

>D8ISZ5.1 D8ISZ5_HERSS Flagellar hook-length control protein
          Length = 431

 Score =  149 bits (376), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 75/76 (98%), Positives = 75/76 (98%)

Query: 1   MPKLREMMDQAGIQLGQATVNTGMPNQQQGANGGQQQARSSSGAGGAGHEQDGEIAITGA 60
           MPKLREMMDQAGIQLGQATVNTGMPNQQQGANGGQQQARSSSGAGGAG EQDGEIAITGA
Sbjct: 356 MPKLREMMDQAGIQLGQATVNTGMPNQQQGANGGQQQARSSSGAGGAGQEQDGEIAITGA 415

Query: 61  ATATTTSGLGLVDTFA 76
           ATATTTSGLGLVDTFA
Sbjct: 416 ATATTTSGLGLVDTFA 431