BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0063.p (151 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISZ2.1 D8ISZ2_HERSS Flagellar motor switch/type III secretion ... 301 2e-80 A6SXX6.1 A6SXX6_JANMA FliN flagellar motor switch/type III secre... 216 9e-55 E4QKK5.1 E4QKK5_METS6 Flagellar motor switch protein FliN 202 1e-50 C6XAT0.1 C6XAT0_METSD Flagellar motor switch protein FliN 202 1e-50 D7DQ23.1 D7DQ23_METS0 Flagellar motor switch protein FliN 200 5e-50 Q1GZV0.1 Q1GZV0_METFK Flagellar motor switch FliN 199 2e-49 F1VUF8.1 F1VUF8_9BURK Flagellar motor switch protein FliN 197 5e-49 C6WV95.1 C6WV95_METML Flagellar motor switch protein FliN 195 2e-48 Q5QCP9.1 Q5QCP9_HERAR FliN 195 2e-48 E6QR70.1 E6QR70_9ZZZZ Flagellar motor switch protein FliN 189 2e-46 >D8ISZ2.1 D8ISZ2_HERSS Flagellar motor switch/type III secretion protein Length = 151 Score = 301 bits (771), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 151/151 (100%), Positives = 151/151 (100%) Query: 1 MADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDI 60 MADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDI Sbjct: 1 MADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDI 60 Query: 61 KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 120 KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI Sbjct: 61 KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 120 Query: 121 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR Sbjct: 121 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151 >A6SXX6.1 A6SXX6_JANMA FliN flagellar motor switch/type III secretory pathway protein Length = 139 Score = 216 bits (550), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 118/151 (78%), Positives = 121/151 (80%), Gaps = 12/151 (7%) Query: 1 MADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDI 60 MADEN EDD WGAAMAEQ Q E A I A PA ATVFKD + D+ Sbjct: 1 MADENEPQT-TVEDD-WGAAMAEQEQTEAA----------AIDAKPASATVFKDFAGGDL 48 Query: 61 KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 120 KT T NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDG+AGEPMDVLVNGCLI Sbjct: 49 KTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLI 108 Query: 121 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR Sbjct: 109 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 139 >E4QKK5.1 E4QKK5_METS6 Flagellar motor switch protein FliN Length = 145 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 106/138 (76%), Positives = 115/138 (83%), Gaps = 11/138 (7%) Query: 14 DDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDIKTNTPNDIDFILD 73 +D WGAAMAEQ QAE++ + A PA ATVF +L+ + + T NDIDFILD Sbjct: 19 EDDWGAAMAEQQQAEDS----------PLQAKPAQATVFTELTGKKM-SETQNDIDFILD 67 Query: 74 IPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFG 133 IPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFG Sbjct: 68 IPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFG 127 Query: 134 IRLTDIITPAERIRKLNR 151 IRLTDIITPAERIRK+NR Sbjct: 128 IRLTDIITPAERIRKINR 145 >C6XAT0.1 C6XAT0_METSD Flagellar motor switch protein FliN Length = 145 Score = 202 bits (514), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 106/138 (76%), Positives = 115/138 (83%), Gaps = 11/138 (7%) Query: 14 DDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDIKTNTPNDIDFILD 73 +D WGAAMAEQ QAE++ + A PA ATVF +L+ + + T NDIDFILD Sbjct: 19 EDDWGAAMAEQQQAEDS----------PLQAKPAQATVFTELTGKKM-SETQNDIDFILD 67 Query: 74 IPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFG 133 IPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFG Sbjct: 68 IPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFG 127 Query: 134 IRLTDIITPAERIRKLNR 151 IRLTDIITPAERIRK+NR Sbjct: 128 IRLTDIITPAERIRKINR 145 >D7DQ23.1 D7DQ23_METS0 Flagellar motor switch protein FliN Length = 157 Score = 200 bits (509), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 110/158 (69%), Positives = 120/158 (75%), Gaps = 8/158 (5%) Query: 1 MADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKG------EMEDEKGISAAPAMAT-VFK 53 MA++ AEDD WGAAMAEQ+ AE G E D + + A T VF Sbjct: 1 MANDAAEDTAVAEDD-WGAAMAEQSTAEATDDWGAAMAEQEATDTSALQSKNAEQTQVFT 59 Query: 54 DLSADDIKTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDV 113 + +A + +T NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDV Sbjct: 60 EFTAKNKLQDTQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDV 119 Query: 114 LVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151 LVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRK+NR Sbjct: 120 LVNGCLIAQGEVVVVNDKFGIRLTDIITPAERIRKINR 157 >Q1GZV0.1 Q1GZV0_METFK Flagellar motor switch FliN Length = 142 Score = 199 bits (505), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 103/137 (75%), Positives = 114/137 (83%), Gaps = 6/137 (4%) Query: 15 DPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDIKTNTPNDIDFILDI 74 D WGAAMAEQ+QAE+A+ ++D K A VF + S+ + T NDIDFILDI Sbjct: 12 DDWGAAMAEQSQAEQAEASA-LQDNKA-----EQAPVFTEFSSKNKLHETQNDIDFILDI 65 Query: 75 PVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGI 134 PVQLTVELGRTKIAIKNLLQLAQGSVVELDG+AGEPMDVLVNGCLIAQGEVVVVNDKFGI Sbjct: 66 PVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVNDKFGI 125 Query: 135 RLTDIITPAERIRKLNR 151 RLTDIITPAERIRK+N+ Sbjct: 126 RLTDIITPAERIRKINK 142 >F1VUF8.1 F1VUF8_9BURK Flagellar motor switch protein FliN Length = 137 Score = 197 bits (500), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 106/141 (75%), Positives = 116/141 (82%), Gaps = 12/141 (8%) Query: 11 AAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDIKTNTPNDIDF 70 AAEDD WGAA+AEQ QAE+A ++A A TVF++ + K T NDIDF Sbjct: 9 AAEDD-WGAAIAEQEQAEKA----------ALNAQQAAPTVFQEFAGSS-KLATHNDIDF 56 Query: 71 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVND 130 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDG+AGEPMDVLVNGCLIAQGEVVVVND Sbjct: 57 ILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLIAQGEVVVVND 116 Query: 131 KFGIRLTDIITPAERIRKLNR 151 KFGIRLTDII+PAERI+KLNR Sbjct: 117 KFGIRLTDIISPAERIKKLNR 137 >C6WV95.1 C6WV95_METML Flagellar motor switch protein FliN Length = 157 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 106/149 (71%), Positives = 116/149 (77%), Gaps = 15/149 (10%) Query: 12 AEDDPWGAAMAEQTQAEEA---------QKKGEMEDEKGISAAPAMATVFKDLSADDIKT 62 AEDD WGAAMAEQ +E A ++ ++D+K A VF + +A + Sbjct: 15 AEDD-WGAAMAEQASSETAADDWGAAMNEQAAALQDDKA-----EKAQVFTEFTAKNKLH 68 Query: 63 NTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQ 122 T NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQ Sbjct: 69 ETQNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQ 128 Query: 123 GEVVVVNDKFGIRLTDIITPAERIRKLNR 151 GEVVVVNDKFGIRLTDIITPAERIRK+NR Sbjct: 129 GEVVVVNDKFGIRLTDIITPAERIRKINR 157 >Q5QCP9.1 Q5QCP9_HERAR FliN Length = 141 Score = 195 bits (495), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 111/151 (73%), Positives = 120/151 (79%), Gaps = 10/151 (6%) Query: 1 MADENVAGAGAAEDDPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDI 60 M++EN + A +D WGAAMAEQ Q E ++ A ATVFKD S D+ Sbjct: 1 MSEENASQTTA--EDGWGAAMAEQEQTEAEAAA--------MAPKAASATVFKDFSGGDL 50 Query: 61 KTNTPNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLI 120 KT T NDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDG+AGEPMDVLVNGCLI Sbjct: 51 KTGTHNDIDFILDIPVQLTVELGRTKIAIKNLLQLAQGSVVELDGLAGEPMDVLVNGCLI 110 Query: 121 AQGEVVVVNDKFGIRLTDIITPAERIRKLNR 151 AQGEVVVVNDKFGIRLTDIITP+ERIRKLNR Sbjct: 111 AQGEVVVVNDKFGIRLTDIITPSERIRKLNR 141 >E6QR70.1 E6QR70_9ZZZZ Flagellar motor switch protein FliN Length = 142 Score = 189 bits (479), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 98/137 (71%), Positives = 110/137 (80%), Gaps = 4/137 (2%) Query: 15 DPWGAAMAEQTQAEEAQKKGEMEDEKGISAAPAMATVFKDLSADDIKTNTPNDIDFILDI 74 D WGAAMAEQT AE + E ++ ++FK+LS+ T T NDIDFILDI Sbjct: 10 DDWGAAMAEQTAAEATPTDAKPETTSNNNSQ----SIFKELSSSGGTTETHNDIDFILDI 65 Query: 75 PVQLTVELGRTKIAIKNLLQLAQGSVVELDGMAGEPMDVLVNGCLIAQGEVVVVNDKFGI 134 PVQLTVELGRTKIAIKNLLQLAQGSVVEL GMAGEPMD+L+NG LIAQGEVVVVNDKFGI Sbjct: 66 PVQLTVELGRTKIAIKNLLQLAQGSVVELAGMAGEPMDILINGFLIAQGEVVVVNDKFGI 125 Query: 135 RLTDIITPAERIRKLNR 151 R+TDII+PAERIRKLN+ Sbjct: 126 RVTDIISPAERIRKLNK 142