BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0060.p (89 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISY9.1 D8ISY9_HERSS Flagellar biosynthetic FliQ protein 174 5e-42 F1VUF5.1 F1VUF5_9BURK Flagellar biosynthesis protein fliQ 139 1e-31 C6WV98.1 C6WV98_METML Flagellar biosynthetic protein FliQ 136 1e-30 E6QR67.1 E6QR67_9ZZZZ Flagellar biosynthetic protein FliQ 134 3e-30 A6SXX3.1 A6SXX3_JANMA FliQ component of flagellar biosynthesis p... 134 4e-30 A4G6A2.1 A4G6A2_HERAR Flagellar biosynthetic protein FliQ 134 5e-30 D7DQ26.1 D7DQ26_METS0 Flagellar biosynthetic protein FliQ 130 9e-29 E4QKK8.1 E4QKK8_METS6 Flagellar biosynthetic protein FliQ 129 1e-28 C6XAT3.1 C6XAT3_METSD Flagellar biosynthetic protein FliQ 129 1e-28 D5CMZ1.1 D5CMZ1_SIDLE Flagellar biosynthetic protein FliQ 123 1e-26 >D8ISY9.1 D8ISY9_HERSS Flagellar biosynthetic FliQ protein Length = 89 Score = 174 bits (440), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 89/89 (100%), Positives = 89/89 (100%) Query: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL Sbjct: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60 Query: 61 AMIVAGPWILTVIVDYMHTMFSGIPAMVQ 89 AMIVAGPWILTVIVDYMHTMFSGIPAMVQ Sbjct: 61 AMIVAGPWILTVIVDYMHTMFSGIPAMVQ 89 >F1VUF5.1 F1VUF5_9BURK Flagellar biosynthesis protein fliQ Length = 89 Score = 139 bits (351), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 62/88 (70%), Positives = 82/88 (93%) Query: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60 MTPESVM MGR AME+TL++AAP+L+ ALLIGL+VSIFQAATQINEQTL+FIPKL+G+F+ Sbjct: 1 MTPESVMVMGRHAMEVTLMVAAPLLMVALLIGLIVSIFQAATQINEQTLSFIPKLVGIFV 60 Query: 61 AMIVAGPWILTVIVDYMHTMFSGIPAMV 88 +++AGPW+L++++DYM MFSGIP+M+ Sbjct: 61 TLVIAGPWMLSIMLDYMREMFSGIPSMI 88 >C6WV98.1 C6WV98_METML Flagellar biosynthetic protein FliQ Length = 89 Score = 136 bits (342), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 66/89 (74%), Positives = 79/89 (88%) Query: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60 MTPESVMT+GR AM ITL+IAAP+LLT L IGLLVSIFQAATQINEQTL+FIPKL+GVF+ Sbjct: 1 MTPESVMTLGRDAMSITLMIAAPILLTVLAIGLLVSIFQAATQINEQTLSFIPKLVGVFV 60 Query: 61 AMIVAGPWILTVIVDYMHTMFSGIPAMVQ 89 A+++AGPW+L +VDYMH +F+ IPAM Sbjct: 61 ALMLAGPWMLGTMVDYMHLVFTSIPAMAN 89 >E6QR67.1 E6QR67_9ZZZZ Flagellar biosynthetic protein FliQ Length = 89 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 62/88 (70%), Positives = 81/88 (92%) Query: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60 MTPESVMT+GR AMEITL++AAPMLL AL++GL+VSIFQAATQINE TL+FIPKL+G+F+ Sbjct: 1 MTPESVMTLGRHAMEITLMVAAPMLLVALVVGLIVSIFQAATQINETTLSFIPKLVGIFI 60 Query: 61 AMIVAGPWILTVIVDYMHTMFSGIPAMV 88 A+IVAGPW+L+V++DYM +F+ +P +V Sbjct: 61 ALIVAGPWMLSVMLDYMREVFTSLPTLV 88 >A6SXX3.1 A6SXX3_JANMA FliQ component of flagellar biosynthesis pathway Length = 98 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 63/89 (70%), Positives = 79/89 (88%) Query: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60 MTPE+VMTMGR A+E+TL++AAPMLL AL IGL+VSIFQAATQINE TL+FIPKL+G+F+ Sbjct: 10 MTPETVMTMGRHAIEVTLMVAAPMLLVALGIGLIVSIFQAATQINETTLSFIPKLIGIFV 69 Query: 61 AMIVAGPWILTVIVDYMHTMFSGIPAMVQ 89 A++VAGPW+LTV++DYM MF+ IP V Sbjct: 70 ALVVAGPWMLTVLLDYMREMFTNIPLYVS 98 >A4G6A2.1 A4G6A2_HERAR Flagellar biosynthetic protein FliQ Length = 89 Score = 134 bits (336), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 64/89 (71%), Positives = 79/89 (88%) Query: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60 MTPE+VMTMGR A+EITL++AAPMLL AL IGL+VSIFQAATQINE TL+FIPKL+G+FL Sbjct: 1 MTPETVMTMGRHAIEITLMVAAPMLLVALGIGLIVSIFQAATQINETTLSFIPKLVGIFL 60 Query: 61 AMIVAGPWILTVIVDYMHTMFSGIPAMVQ 89 A+I+AGPW+LTV++DYM F+ IP +V Sbjct: 61 ALIIAGPWMLTVLLDYMRETFTNIPLLVS 89 >D7DQ26.1 D7DQ26_METS0 Flagellar biosynthetic protein FliQ Length = 89 Score = 130 bits (326), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 64/89 (71%), Positives = 75/89 (84%) Query: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60 MTPESVMT+GR AMEITLL+AAP+LL L IGLLVSIFQAATQINE TL+FIPKL+GVF Sbjct: 1 MTPESVMTLGRDAMEITLLVAAPILLVVLAIGLLVSIFQAATQINEATLSFIPKLVGVFG 60 Query: 61 AMIVAGPWILTVIVDYMHTMFSGIPAMVQ 89 ++ AG W+LT +VDYMH +F+ IPAM Sbjct: 61 TLMFAGQWMLTTLVDYMHLVFTSIPAMAN 89 >E4QKK8.1 E4QKK8_METS6 Flagellar biosynthetic protein FliQ Length = 89 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 58/87 (66%), Positives = 78/87 (89%) Query: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60 MTPE VMT+GRQAME+TL+++APML+ L+IGLLVSIFQAATQINE TL+FIPKL+GVF Sbjct: 1 MTPEGVMTLGRQAMEVTLMVSAPMLIVVLVIGLLVSIFQAATQINETTLSFIPKLVGVFA 60 Query: 61 AMIVAGPWILTVIVDYMHTMFSGIPAM 87 +++AGPW+L+V++DYM +F+ IP++ Sbjct: 61 VLVIAGPWMLSVMLDYMRAIFTSIPSL 87 >C6XAT3.1 C6XAT3_METSD Flagellar biosynthetic protein FliQ Length = 89 Score = 129 bits (324), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 58/87 (66%), Positives = 78/87 (89%) Query: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60 MTPE VMT+GRQAME+TL+++APML+ L+IGLLVSIFQAATQINE TL+FIPKL+GVF Sbjct: 1 MTPEGVMTLGRQAMEVTLMVSAPMLIVVLVIGLLVSIFQAATQINETTLSFIPKLVGVFA 60 Query: 61 AMIVAGPWILTVIVDYMHTMFSGIPAM 87 +++AGPW+L+V++DYM +F+ IP++ Sbjct: 61 VLVIAGPWMLSVMLDYMRAIFTSIPSL 87 >D5CMZ1.1 D5CMZ1_SIDLE Flagellar biosynthetic protein FliQ Length = 89 Score = 123 bits (308), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 57/88 (64%), Positives = 79/88 (89%) Query: 1 MTPESVMTMGRQAMEITLLIAAPMLLTALLIGLLVSIFQAATQINEQTLAFIPKLLGVFL 60 MTPESVMT+G+QA+E+T++++AP LLTAL+IGLLVSIFQAATQINE TL+FIPKLLG F+ Sbjct: 1 MTPESVMTIGQQALELTIMVSAPPLLTALIIGLLVSIFQAATQINELTLSFIPKLLGAFV 60 Query: 61 AMIVAGPWILTVIVDYMHTMFSGIPAMV 88 +I++GPW++ +++DY+ +FS IP +V Sbjct: 61 VLIISGPWMIGILLDYITRLFSSIPYLV 88