BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0059.p (267 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISY8.1 D8ISY8_HERSS Flagellar biosynthetic protein fliR 516 e-144 A6SXX2.1 A6SXX2_JANMA Flagellar biosynthetic protein fliR 282 4e-74 A4G6A3.2 A4G6A3_HERAR Flagellar biosynthetic protein fliR 276 3e-72 F1VUF4.1 F1VUF4_9BURK Flagellar biosynthesis protein FliR 265 7e-69 E6QR66.1 E6QR66_9ZZZZ Flagellar biosynthetic protein FliR 256 3e-66 Q2Y9B1.1 Q2Y9B1_NITMU Flagellar biosynthetic protein fliR 236 3e-60 Q3SIG3.1 Q3SIG3_THIDA Flagellar biosynthetic protein fliR 234 1e-59 C6WV99.1 C6WV99_METML Flagellar biosynthetic protein fliR 232 3e-59 D9SEZ0.1 D9SEZ0_GALCS Flagellar biosynthetic protein fliR 232 5e-59 Q82X40.1 Q82X40_NITEU Flagellar biosynthetic protein fliR 228 9e-58 >D8ISY8.1 D8ISY8_HERSS Flagellar biosynthetic protein fliR Length = 267 Score = 516 bits (1329), Expect = e-144, Method: Compositional matrix adjust. Identities = 267/267 (100%), Positives = 267/267 (100%) Query: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI Sbjct: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 Query: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ Sbjct: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 Query: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI Sbjct: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180 Query: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTP 240 FSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTP Sbjct: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTP 240 Query: 241 VQKLLSDGVEMVRLLGSVPPVNALPKP 267 VQKLLSDGVEMVRLLGSVPPVNALPKP Sbjct: 241 VQKLLSDGVEMVRLLGSVPPVNALPKP 267 >A6SXX2.1 A6SXX2_JANMA Flagellar biosynthetic protein fliR Length = 263 Score = 282 bits (721), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 139/263 (52%), Positives = 197/263 (74%), Gaps = 1/263 (0%) Query: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 M++ +S +L W+A F+WP TRI+G++++AP FG+ SVP VK+ LG+ + +IAP VP Sbjct: 1 MISLTSAELNTWIAAFLWPLTRIIGMISVAPLFGNVSVPARVKIGLGILLAMIIAPTVPA 60 Query: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 PA++P S+ G++IL QQL+IGLS+GFAMRI FA VE AGE TMGL FA+FFDPQT+ Sbjct: 61 MPALDPMSLQGLLILAQQLIIGLSIGFAMRITFAGVEMAGEIIGMTMGLGFASFFDPQTR 120 Query: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180 R++ ISQ +LL M++L N HL++L +A+SF LPI+ ++ G ++V WG +I Sbjct: 121 ARSSAISQFLALLTLMIYLATNLHLVVLSTLAQSFEMLPISSSFLSAGGMLEVVKWGGRI 180 Query: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTP 240 FS G+QLSLP++ ALLITN ALG+LTRAAPQLN+FGIGF IT+ GFI+IGI LPY++ P Sbjct: 181 FSAGVQLSLPIVAALLITNIALGILTRAAPQLNIFGIGFPITIGVGFIMIGIVLPYLMNP 240 Query: 241 VQKLLSDGVE-MVRLLGSVPPVN 262 + L+ +G++ M R+ ++ P+N Sbjct: 241 IINLMQEGIDAMGRITVAMTPLN 263 >A4G6A3.2 A4G6A3_HERAR Flagellar biosynthetic protein fliR Length = 263 Score = 276 bits (705), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 143/250 (57%), Positives = 193/250 (77%) Query: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 M+T +S +L W+A F+WP TRILGL+++AP FG+ SVP VK+ LG+ + +IAP VP Sbjct: 1 MITLTSAELNTWIASFLWPLTRILGLISVAPLFGNVSVPARVKISLGIMLALIIAPTVPA 60 Query: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 PA++P S G++IL+QQLLIGL+MGFAMRIVFA VE AGE T TMGL FA+FFDPQT+ Sbjct: 61 LPAMDPMSPAGLLILVQQLLIGLTMGFAMRIVFAGVEMAGEITGMTMGLGFASFFDPQTR 120 Query: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180 R++ ISQ +LL M++L+ N HL++L +A+SF LPI+ ++TEGF Q+V WG +I Sbjct: 121 ARSSAISQFLALLILMIYLSTNLHLVVLSTLAQSFELLPISSNFVSTEGFFQVVKWGGRI 180 Query: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTP 240 FS G+QLSLP++ ALL+TN ALG+LTRAAPQLN+FGIGF IT+ GFI+I I LPY++ P Sbjct: 181 FSAGVQLSLPMVAALLMTNIALGILTRAAPQLNIFGIGFPITIGVGFIMIAIVLPYLMNP 240 Query: 241 VQKLLSDGVE 250 L+ +G++ Sbjct: 241 FINLMQEGID 250 >F1VUF4.1 F1VUF4_9BURK Flagellar biosynthesis protein FliR Length = 258 Score = 265 bits (676), Expect = 7e-69, Method: Compositional matrix adjust. Identities = 141/255 (55%), Positives = 188/255 (73%) Query: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 ML FSS +L + F+WP TRILGL+A+AP FG+ASVP +KV LG+ I ++AP V + Sbjct: 1 MLNFSSAELNALITGFLWPLTRILGLIAVAPVFGNASVPRRIKVGLGILIAMIVAPLVQV 60 Query: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 P +EP SM G++IL+QQLLIG++MGF+MRI+F+AVE AGE S TMGL FA FFDPQ++ Sbjct: 61 PSGLEPMSMQGLLILVQQLLIGIAMGFSMRIIFSAVEMAGEVASMTMGLGFATFFDPQSR 120 Query: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180 GR+ +SQ SL+ MV+L N HL LL + +SF T+PIT P+ Q+V W +++ Sbjct: 121 GRSNAVSQFLSLIVLMVYLAANVHLALLSTLVDSFTTMPITVGPLAGNIAEQVVRWASRL 180 Query: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTP 240 FS GLQL+LP++ ALLITN ALG+LTRAAP LNLFGIGF IT+ GF ++G+ LPY+ TP Sbjct: 181 FSAGLQLALPIVAALLITNVALGILTRAAPSLNLFGIGFPITLTIGFAMLGLVLPYLATP 240 Query: 241 VQKLLSDGVEMVRLL 255 + KL + + M+R L Sbjct: 241 MAKLFEETINMIRQL 255 >E6QR66.1 E6QR66_9ZZZZ Flagellar biosynthetic protein FliR Length = 257 Score = 256 bits (653), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 139/253 (54%), Positives = 186/253 (73%), Gaps = 1/253 (0%) Query: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 M+TF++ LY W+ F+WP TRILGL++ AP FG SVP++ K+ LGV + ++AP++ Sbjct: 1 MITFTAATLYTWLGAFLWPLTRILGLISTAPVFGHNSVPVMAKIGLGVLLAIIVAPNLTH 60 Query: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 P + P S+ GI+IL+QQ +IG +MGFAM I F AV+ AG S TMGLSFA+FFDPQ Q Sbjct: 61 LPDVNPASLPGILILIQQFIIGTAMGFAMNITFIAVDMAGSIISMTMGLSFASFFDPQAQ 120 Query: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180 G+T VISQ +LLAT+VFL++NGHL+L++ + +SF+TLPI P F Q+V W I Sbjct: 121 GQTTVISQFLTLLATLVFLSINGHLVLIKNLIDSFYTLPIGMWP-GNHIFLQMVDWSGII 179 Query: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTP 240 G+QLSLP++ ALLITN ALG+LTRAAPQLNLFGIGF IT+ GF+ + +TLPY+ P Sbjct: 180 MHAGVQLSLPIIAALLITNIALGILTRAAPQLNLFGIGFPITIGVGFLTLALTLPYLAMP 239 Query: 241 VQKLLSDGVEMVR 253 VQK+L G+E + Sbjct: 240 VQKVLQQGLEFTQ 252 >Q2Y9B1.1 Q2Y9B1_NITMU Flagellar biosynthetic protein fliR Length = 260 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 116/250 (46%), Positives = 174/250 (69%) Query: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 M+T SS L W+ F WP RIL L+++AP G+ +VP+ VKV LGV + V+AP + Sbjct: 1 MITLSSVDLNAWLISFFWPAARILALLSVAPVLGNLAVPVRVKVGLGVLVALVVAPTLES 60 Query: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 P IE S G+++L QQ++IGL+MGFAMRI+F+A+E AGE MGL FA FF P + Sbjct: 61 VPKIELASAPGLLVLGQQIMIGLAMGFAMRIIFSAIELAGEIAGLQMGLGFATFFTPHSD 120 Query: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180 G + V+ + LL T+ FL+ NGHL++L + +SF+ PI+ +P + G+ +L WG+ I Sbjct: 121 GSSLVLGRFLGLLGTLAFLSFNGHLLMLSALIDSFNAFPISTEPFSNMGWKRLAEWGSVI 180 Query: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTP 240 FS+GLQL+LP++ ALLI N ALG+LTRA+PQLN+F +GF IT++ G + ++LP+ Sbjct: 181 FSVGLQLALPVVAALLIVNLALGILTRASPQLNIFAVGFPITLMIGMSALMLSLPHFTPV 240 Query: 241 VQKLLSDGVE 250 +++L++DG++ Sbjct: 241 LERLITDGLQ 250 >Q3SIG3.1 Q3SIG3_THIDA Flagellar biosynthetic protein fliR Length = 262 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 126/250 (50%), Positives = 178/250 (71%) Query: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 M++ + QL VW+ FIWP TRILGL+ +AP FG +VP VK+ LG+ I + AP +P Sbjct: 1 MISLTDAQLNVWLISFIWPLTRILGLVMVAPVFGHRAVPGRVKIGLGIFIALIAAPTLPP 60 Query: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 PA+ S G+ IL+QQ LIG+++GF MRIVFAAVEAAGE MGL FA+FFDPQ+ Sbjct: 61 MPAVGLGSWHGLFILVQQFLIGVAIGFIMRIVFAAVEAAGEIIGLQMGLGFASFFDPQSA 120 Query: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180 G+T V+++ F++LA ++ L +N HL+LL V+ ESF LPI+ +P+ GF + +G I Sbjct: 121 GQTLVLARFFNMLAVLLMLAVNAHLLLLGVLVESFQILPISHEPLAAAGFRNVAAFGTTI 180 Query: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTP 240 FS+GLQL+LPL+ LL+TN LG+LTR+APQLN+F IGF IT+ G I++ +TLPY Sbjct: 181 FSLGLQLALPLIAILLMTNLTLGILTRSAPQLNIFAIGFPITLGVGLIMLDVTLPYFAPQ 240 Query: 241 VQKLLSDGVE 250 ++L++ G++ Sbjct: 241 FEQLIASGLD 250 >C6WV99.1 C6WV99_METML Flagellar biosynthetic protein fliR Length = 263 Score = 232 bits (592), Expect = 3e-59, Method: Compositional matrix adjust. Identities = 124/252 (49%), Positives = 172/252 (68%), Gaps = 5/252 (1%) Query: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 M+TFS + L WV +WP TRIL ++AI P A++P VK+ L V + +I P +P Sbjct: 1 MITFSGEFLQTWVISLLWPLTRILAVIAIVPILSHATIPRRVKLGLSVLLTIIIVPTIPP 60 Query: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 P E S+ G++IL+QQ++IG ++GF+MR+VFAAV+ AG+ TMGL FA FFDPQT Sbjct: 61 LPQFEAFSLEGLLILVQQVIIGFAIGFSMRLVFAAVDLAGQLIGLTMGLGFAQFFDPQTN 120 Query: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPI--TGQPITTEGFHQLVLWGA 178 G++ ++Q+ LLA ++FL+L+GHLI++ MA SF T+PI G I Q+ LWG Sbjct: 121 GQSTALNQLLVLLAMLIFLSLDGHLIIVSAMARSFITMPIGLGGAGIDA---MQIALWGN 177 Query: 179 KIFSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYML 238 IFS GL L+LP + ALLITN ALG+LTR APQLNLFGIGF IT+ GF+++ ++L ML Sbjct: 178 TIFSAGLMLALPAVCALLITNMALGILTRTAPQLNLFGIGFPITLSMGFVVVALSLSSML 237 Query: 239 TPVQKLLSDGVE 250 P+ K + G + Sbjct: 238 QPIIKFIEQGTD 249 >D9SEZ0.1 D9SEZ0_GALCS Flagellar biosynthetic protein fliR Length = 260 Score = 232 bits (591), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 121/260 (46%), Positives = 179/260 (68%), Gaps = 1/260 (0%) Query: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 ML+ +S QL +W++ ++P R+L +++ AP G+ VP VK+ L V + VIAP + Sbjct: 1 MLSVTSAQLDIWLSTLLYPMVRLLAMISSAPILGNKQVPARVKIGLSVLMAIVIAPTLAP 60 Query: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 P I S ++I++QQ++IG+SMGF MRIVF AVE AGEF+ MGL FA+F++PQ+ Sbjct: 61 MPDIPLGSPQSLLIMVQQIIIGVSMGFTMRIVFTAVEMAGEFSGLQMGLGFASFYNPQSA 120 Query: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180 + V +Q ++AT+ FL++NGHL+LL ++ ESFHTLP+ GQ + T+ F+ WGA I Sbjct: 121 SSSTVTAQFMGIIATLAFLSMNGHLMLLALVTESFHTLPV-GQMMATKSFYTAAQWGATI 179 Query: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTP 240 F+ GLQLS+PLL ALLITN ALG++TRAA QLN F IGF IT+ GF ++ ++LPY+ Sbjct: 180 FAYGLQLSMPLLAALLITNLALGIMTRAAQQLNPFAIGFPITLTVGFFVLSLSLPYLAPM 239 Query: 241 VQKLLSDGVEMVRLLGSVPP 260 + ++ ++G+ L +PP Sbjct: 240 LDRMTTEGLATALKLVKLPP 259 >Q82X40.1 Q82X40_NITEU Flagellar biosynthetic protein fliR Length = 265 Score = 228 bits (580), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 125/265 (47%), Positives = 178/265 (67%) Query: 1 MLTFSSQQLYVWVAMFIWPTTRILGLMAIAPPFGSASVPMLVKVLLGVAIGAVIAPDVPI 60 M + +++QL W++ IWP RIL L+A P GS+S+P K+ L V + +IAP +P Sbjct: 1 MFSITTEQLNSWLSTLIWPLARILALLASTPLLGSSSIPTQTKLGLAVLLAILIAPLLPP 60 Query: 61 PPAIEPTSMTGIMILLQQLLIGLSMGFAMRIVFAAVEAAGEFTSTTMGLSFAAFFDPQTQ 120 P I+P S G+++L+QQ++IGL+MGF+MRIVF AVE AGE T MGL FA FFDPQ Sbjct: 61 LPQIDPGSGVGLIVLMQQIIIGLAMGFSMRIVFTAVEMAGEITGLQMGLGFATFFDPQQS 120 Query: 121 GRTAVISQVFSLLATMVFLNLNGHLILLQVMAESFHTLPITGQPITTEGFHQLVLWGAKI 180 G+ ++ + + LLAT+ FL ++GHL ++ ++A SF TLPI + ++T F LV WG KI Sbjct: 121 GQVQLVGRFYGLLATLTFLAIDGHLQVIAILAHSFTTLPIGAEGMSTTSFTALVNWGIKI 180 Query: 181 FSMGLQLSLPLLIALLITNFALGVLTRAAPQLNLFGIGFSITMLAGFILIGITLPYMLTP 240 F +GL LSLP+L ALLITN ALG+LTRAAPQLN+F +GF +T+ G +++ LPY Sbjct: 181 FMLGLHLSLPVLTALLITNLALGILTRAAPQLNIFAVGFPLTLGIGLLVMSWALPYFTPL 240 Query: 241 VQKLLSDGVEMVRLLGSVPPVNALP 265 + +L + ++R L S V +P Sbjct: 241 LNQLFQESFSVMRSLSSKASVAGIP 265