BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0044.p (254 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISX3.1 D8ISX3_HERSS Flagellar basal body P-ring formation protein 507 e-142 A4G6B5.1 A4G6B5_HERAR Flagella basal body P-ring formation prote... 270 1e-70 A6SXW0.1 A6SXW0_JANMA Flagellar basal body P-ring biosynthesis p... 259 3e-67 F1VUE1.1 F1VUE1_9BURK Flagellar basal-body P-ring formation prot... 249 2e-64 C6WVB1.1 C6WVB1_METML Flagella basal body P-ring formation prote... 215 4e-54 E4QKM1.1 E4QKM1_METS6 Flagella basal body P-ring formation prote... 214 7e-54 C6XBV3.1 C6XBV3_METSD Flagella basal body P-ring formation prote... 214 7e-54 D7DJ49.1 D7DJ49_METS0 Flagella basal body P-ring formation prote... 211 7e-53 Q2Y9F0.1 Q2Y9F0_NITMU Flagellar protein FlgA 210 2e-52 Q1GZW7.1 Q1GZW7_METFK Flagellar protein FlgA 198 8e-49 >D8ISX3.1 D8ISX3_HERSS Flagellar basal body P-ring formation protein Length = 254 Score = 507 bits (1306), Expect = e-142, Method: Compositional matrix adjust. Identities = 252/254 (99%), Positives = 252/254 (99%) Query: 1 MSPWDKLLKMKHPLRALRHACAALALLAGGLLALSPASAQNDPTVPQRQDLQIVQQTAEQ 60 MSPWDKLLKMKHPLR LRHACAALALLAGGLLALSPASAQNDPT PQRQDLQIVQQTAEQ Sbjct: 1 MSPWDKLLKMKHPLRVLRHACAALALLAGGLLALSPASAQNDPTAPQRQDLQIVQQTAEQ 60 Query: 61 FLKAQTAGLPGSITIQTDPIDQRMMLPACLDPQAFMPNGARLWGRTSVGVKCVAPAPWTI 120 FLKAQTAGLPGSITIQTDPIDQRMMLPACLDPQAFMPNGARLWGRTSVGVKCVAPAPWTI Sbjct: 61 FLKAQTAGLPGSITIQTDPIDQRMMLPACLDPQAFMPNGARLWGRTSVGVKCVAPAPWTI 120 Query: 121 YVRANVQVISDYLIAAVPLAQGQTISASDISRVRGDMSALPAGVITEESQVIGRVAGMSL 180 YVRANVQVISDYLIAAVPLAQGQTISASDISRVRGDMSALPAGVITEESQVIGRVAGMSL Sbjct: 121 YVRANVQVISDYLIAAVPLAQGQTISASDISRVRGDMSALPAGVITEESQVIGRVAGMSL 180 Query: 181 RAGTPLRMDAIRNQRVVQQGQSVRVVSNGPGFQISTEARALSNANEGQMTQARTAAGQVV 240 RAGTPLRMDAIRNQRVVQQGQSVRVVSNGPGFQISTEARALSNANEGQMTQARTAAGQVV Sbjct: 181 RAGTPLRMDAIRNQRVVQQGQSVRVVSNGPGFQISTEARALSNANEGQMTQARTAAGQVV 240 Query: 241 SGIAKAGGILEINY 254 SGIAKAGGILEINY Sbjct: 241 SGIAKAGGILEINY 254 >A4G6B5.1 A4G6B5_HERAR Flagella basal body P-ring formation protein FlgA Length = 235 Score = 270 bits (691), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 131/224 (58%), Positives = 170/224 (75%), Gaps = 1/224 (0%) Query: 32 LALSPASAQNDPTVPQ-RQDLQIVQQTAEQFLKAQTAGLPGSITIQTDPIDQRMMLPACL 90 LALS A P+ RQDL +++QTAEQFL+AQ AGLPG + + ID R LPAC+ Sbjct: 12 LALSAQCAVAQGVEPEARQDLGVLKQTAEQFLRAQAAGLPGEVRVTMGSIDPRTKLPACV 71 Query: 91 DPQAFMPNGARLWGRTSVGVKCVAPAPWTIYVRANVQVISDYLIAAVPLAQGQTISASDI 150 P+AF+P ++ WG+TSVG++C AP+ WTIYV+A VQV +Y+ AA PL+QGQTI DI Sbjct: 72 APEAFLPASSKAWGKTSVGLRCSAPSRWTIYVQAKVQVHGEYIAAAAPLSQGQTIGQGDI 131 Query: 151 SRVRGDMSALPAGVITEESQVIGRVAGMSLRAGTPLRMDAIRNQRVVQQGQSVRVVSNGP 210 + ++GD++ LPAGVIT+ SQ IGR A ++ G PLR DA+RNQ+ +QQGQ+VRVV NG Sbjct: 132 ATLKGDLTTLPAGVITDASQAIGRTAATTVALGAPLRQDALRNQQAIQQGQAVRVVVNGA 191 Query: 211 GFQISTEARALSNANEGQMTQARTAAGQVVSGIAKAGGILEINY 254 GF +S+EARAL+NANEGQ+TQ RT AGQV+SGIAK GGI+E+ Y Sbjct: 192 GFSVSSEARALNNANEGQLTQVRTPAGQVISGIAKLGGIVELTY 235 >A6SXW0.1 A6SXW0_JANMA Flagellar basal body P-ring biosynthesis protein Length = 234 Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 134/246 (54%), Positives = 175/246 (71%), Gaps = 13/246 (5%) Query: 10 MKHPLRALRH-ACAALALLAGGLLALSPASAQNDPTVPQRQDLQIVQQTAEQFLKAQTAG 68 MKH L H A AAL+L L+ A A +P RQDL +++QTAEQFL+ Q G Sbjct: 1 MKH----LFHIAIAALSLST----QLAWAQAAAEP----RQDLAVLKQTAEQFLQMQANG 48 Query: 69 LPGSITIQTDPIDQRMMLPACLDPQAFMPNGARLWGRTSVGVKCVAPAPWTIYVRANVQV 128 LPG + + ID R+ LP C P+AF+P ++ WG+T+VGV+C P WTIYV A V+V Sbjct: 49 LPGEVKVTVGAIDPRLKLPVCPVPEAFLPPSSKAWGKTTVGVRCNVPTVWTIYVSAQVRV 108 Query: 129 ISDYLIAAVPLAQGQTISASDISRVRGDMSALPAGVITEESQVIGRVAGMSLRAGTPLRM 188 +Y+ AA PLAQGQ I DI++V+GD++ LP+GVIT+ SQ IGR A ++ G PLR Sbjct: 109 HGEYIAAAAPLAQGQNIGPGDIAKVKGDLTNLPSGVITDASQAIGRTAATTIALGAPLRQ 168 Query: 189 DAIRNQRVVQQGQSVRVVSNGPGFQISTEARALSNANEGQMTQARTAAGQVVSGIAKAGG 248 DA+RNQ+ +QQGQ+VRV+ NG GF +S+EARAL+NANEGQ+TQ RTAAGQV+SGIAK GG Sbjct: 169 DALRNQQAIQQGQAVRVILNGDGFSVSSEARALNNANEGQLTQVRTAAGQVISGIAKLGG 228 Query: 249 ILEINY 254 I+E+ Y Sbjct: 229 IVELAY 234 >F1VUE1.1 F1VUE1_9BURK Flagellar basal-body P-ring formation protein flgA Length = 245 Score = 249 bits (637), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 136/250 (54%), Positives = 187/250 (74%), Gaps = 15/250 (6%) Query: 5 DKLLKMKHPLRALRHACAALALLAGGLLALSPASAQNDPTVPQRQDLQIVQQTAEQFLKA 64 + L+ MK L AL AC LL+L PA+AQ + RQD ++ T E+FL+A Sbjct: 11 NTLIAMKTLLVAL--AC---------LLSL-PATAQ---IMAPRQDPATIRTTVERFLRA 55 Query: 65 QTAGLPGSITIQTDPIDQRMMLPACLDPQAFMPNGARLWGRTSVGVKCVAPAPWTIYVRA 124 Q+AG PG +TI +D RM LPAC P+AF+P G+R+WG+TSVGV+C+AP+PWT+YV A Sbjct: 56 QSAGSPGDVTITVGQLDARMNLPACPVPEAFLPAGSRVWGKTSVGVRCLAPSPWTVYVTA 115 Query: 125 NVQVISDYLIAAVPLAQGQTISASDISRVRGDMSALPAGVITEESQVIGRVAGMSLRAGT 184 V+VI++Y+ +A PLAQGQ + +D+ R+RGD++ LPAG++T+ +Q IGR MSL G+ Sbjct: 116 QVKVIAEYVASAAPLAQGQLVGPNDVIRMRGDLTVLPAGILTDPAQAIGRTMAMSLGMGS 175 Query: 185 PLRMDAIRNQRVVQQGQSVRVVSNGPGFQISTEARALSNANEGQMTQARTAAGQVVSGIA 244 PLR DA+R Q+VVQQGQ+VR+VS+GPGF ++TE RAL+NA EGQ+ QARTAAGQVVSG+A Sbjct: 176 PLRTDALRIQQVVQQGQAVRLVSSGPGFSVATEGRALNNAAEGQIAQARTAAGQVVSGVA 235 Query: 245 KAGGILEINY 254 +AGG +++ Y Sbjct: 236 RAGGYVDVTY 245 >C6WVB1.1 C6WVB1_METML Flagella basal body P-ring formation protein FlgA Length = 265 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 105/233 (45%), Positives = 156/233 (66%), Gaps = 3/233 (1%) Query: 24 LALLAGGLLALSPASAQN--DPTVPQRQDLQIVQQTAEQFLKAQTAGLPGSITIQTDPID 81 +AL+ G L A++Q + P +QDL + +FL+ QT G PG +T+Q ID Sbjct: 34 IALMLGSAQTLHAATSQAALNKQYP-KQDLSQLSAKVVEFLQTQTVGYPGKVTVQAGAID 92 Query: 82 QRMMLPACLDPQAFMPNGARLWGRTSVGVKCVAPAPWTIYVRANVQVISDYLIAAVPLAQ 141 + L C D Q F+P G+R WG+TSVG++C P+ WTIY +A V V++ YL+AAVPLAQ Sbjct: 93 PNLKLAQCQDAQVFLPTGSRAWGKTSVGIRCNTPSAWTIYAQATVNVVAQYLVAAVPLAQ 152 Query: 142 GQTISASDISRVRGDMSALPAGVITEESQVIGRVAGMSLRAGTPLRMDAIRNQRVVQQGQ 201 G+ ++A D+ GD++ LPAG+ T+ +Q GR+ +S+ AGT LR + ++ VVQQGQ Sbjct: 153 GRVVTADDLLFQSGDLTQLPAGIFTDLAQAQGRIVNISMTAGTVLRQEMLKVSPVVQQGQ 212 Query: 202 SVRVVSNGPGFQISTEARALSNANEGQMTQARTAAGQVVSGIAKAGGILEINY 254 +V V S+G GF++S E +A++ ANEGQ+ Q + A+GQVVSGIA+ GG +E+ + Sbjct: 213 TVMVTSSGKGFRVSAEGKAMTKANEGQVVQVKVASGQVVSGIARQGGQVEVVF 265 >E4QKM1.1 E4QKM1_METS6 Flagella basal body P-ring formation protein FlgA Length = 242 Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 107/234 (45%), Positives = 153/234 (65%), Gaps = 5/234 (2%) Query: 21 CAALALLAGGLLALSPASAQNDPTVPQRQDLQIVQQTAEQFLKAQTAGLPGSITIQTDPI 80 C + LLAG ALS A A P Q Q+L +++ E+FL QTAG PG +T+ I Sbjct: 14 CTGILLLAGS--ALSHAEAM--PNTDQTQNLTSIRKKVEEFLTVQTAGYPGRVTVTAGAI 69 Query: 81 DQRMMLPACLDPQAFMPNGARLWGRTSVGVKCVAPAPWTIYVRANVQVISDYLIAAVPLA 140 D + L C + FMP G+R WG+T+VGV+C APA WTIY++A V V+ YL+AA PLA Sbjct: 70 DNNLKLAKCPALEVFMPQGSRAWGKTNVGVRCNAPA-WTIYMQATVNVVGQYLVAAAPLA 128 Query: 141 QGQTISASDISRVRGDMSALPAGVITEESQVIGRVAGMSLRAGTPLRMDAIRNQRVVQQG 200 QG+ + + D+ GD++ LP G+ T+ Q IGR+ +S+ AGT LR + ++ VVQQG Sbjct: 129 QGRVVDSGDLLFESGDLAQLPPGIFTDPEQAIGRIVNISMNAGTVLRQEMLKASPVVQQG 188 Query: 201 QSVRVVSNGPGFQISTEARALSNANEGQMTQARTAAGQVVSGIAKAGGILEINY 254 Q+V +++ G GF IS E AL+NA +GQ+ + + A GQVVSGIA+ GG +E+++ Sbjct: 189 QTVTLITRGKGFSISAEGHALNNATDGQLVRVKVANGQVVSGIARNGGKIEVSF 242 >C6XBV3.1 C6XBV3_METSD Flagella basal body P-ring formation protein FlgA Length = 242 Score = 214 bits (546), Expect = 7e-54, Method: Compositional matrix adjust. Identities = 107/234 (45%), Positives = 153/234 (65%), Gaps = 5/234 (2%) Query: 21 CAALALLAGGLLALSPASAQNDPTVPQRQDLQIVQQTAEQFLKAQTAGLPGSITIQTDPI 80 C + LLAG ALS A A P Q Q+L +++ E+FL QTAG PG +T+ I Sbjct: 14 CTGILLLAGS--ALSHAEAM--PNTDQTQNLTSIRKKVEEFLTVQTAGYPGRVTVTAGAI 69 Query: 81 DQRMMLPACLDPQAFMPNGARLWGRTSVGVKCVAPAPWTIYVRANVQVISDYLIAAVPLA 140 D + L C + FMP G+R WG+T+VGV+C APA WTIY++A V V+ YL+AA PLA Sbjct: 70 DNNLKLAKCPALEVFMPQGSRAWGKTNVGVRCNAPA-WTIYMQATVNVVGQYLVAAAPLA 128 Query: 141 QGQTISASDISRVRGDMSALPAGVITEESQVIGRVAGMSLRAGTPLRMDAIRNQRVVQQG 200 QG+ + + D+ GD++ LP G+ T+ Q IGR+ +S+ AGT LR + ++ VVQQG Sbjct: 129 QGRVVDSGDLLFESGDLAQLPPGIFTDPEQAIGRIVNISMNAGTVLRQEMLKASPVVQQG 188 Query: 201 QSVRVVSNGPGFQISTEARALSNANEGQMTQARTAAGQVVSGIAKAGGILEINY 254 Q+V +++ G GF IS E AL+NA +GQ+ + + A GQVVSGIA+ GG +E+++ Sbjct: 189 QTVTLITRGKGFSISAEGHALNNATDGQLVRVKVANGQVVSGIARNGGKIEVSF 242 >D7DJ49.1 D7DJ49_METS0 Flagella basal body P-ring formation protein FlgA Length = 251 Score = 211 bits (537), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 102/220 (46%), Positives = 146/220 (66%), Gaps = 2/220 (0%) Query: 35 SPASAQNDPTVPQRQDLQIVQQTAEQFLKAQTAGLPGSITIQTDPIDQRMMLPACLDPQA 94 +P +A P + +Q+L ++ +FL+ QT G PG +++ ID + L C D Q Sbjct: 34 TPVTAVAPPMI--KQNLASIKTKITEFLETQTIGYPGKVSVHAGAIDPNLKLAQCPDMQV 91 Query: 95 FMPNGARLWGRTSVGVKCVAPAPWTIYVRANVQVISDYLIAAVPLAQGQTISASDISRVR 154 FMP G+R WG+TSVGV+C AP WTIYV+A V VI+ YL+AA PLAQGQT++ D+ Sbjct: 92 FMPTGSRAWGKTSVGVRCNAPNVWTIYVQATVNVIAQYLVAASPLAQGQTVTEQDMMFES 151 Query: 155 GDMSALPAGVITEESQVIGRVAGMSLRAGTPLRMDAIRNQRVVQQGQSVRVVSNGPGFQI 214 GD++ LPAGV TE+SQ IGR +S+ AG LR + ++ VVQ GQ+V V S G GF + Sbjct: 152 GDLTQLPAGVFTEQSQAIGRTVNISMNAGAVLRQELLKVAPVVQLGQTVMVTSKGNGFSV 211 Query: 215 STEARALSNANEGQMTQARTAAGQVVSGIAKAGGILEINY 254 S E +++ ANEGQ+ Q + A+GQ+V+GIA+ GG +E+ + Sbjct: 212 SAEGLSMAKANEGQVVQVKVASGQIVTGIARNGGQVEVGF 251 >Q2Y9F0.1 Q2Y9F0_NITMU Flagellar protein FlgA Length = 248 Score = 210 bits (534), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 102/207 (49%), Positives = 142/207 (68%) Query: 48 RQDLQIVQQTAEQFLKAQTAGLPGSITIQTDPIDQRMMLPACLDPQAFMPNGARLWGRTS 107 RQD VQQ FL+ Q+ GLPG + I + ID R+ LPAC + +P G R WG T+ Sbjct: 42 RQDPHAVQQAVLSFLQMQSIGLPGEVEITSGTIDGRLALPACTALEPSLPPGTRPWGNTT 101 Query: 108 VGVKCVAPAPWTIYVRANVQVISDYLIAAVPLAQGQTISASDISRVRGDMSALPAGVITE 167 V V+C AP WTIYVRA V+V+++YL++ PL QGQ I ASD++ +GD++ LP G++T+ Sbjct: 102 VMVRCTAPHSWTIYVRATVKVVAEYLVSTRPLRQGQVIDASDLTSRKGDLTQLPPGIVTD 161 Query: 168 ESQVIGRVAGMSLRAGTPLRMDAIRNQRVVQQGQSVRVVSNGPGFQISTEARALSNANEG 227 +Q IGR G +L G+PLR D +R Q V Q Q+V++VS+G GF +S E +AL++A EG Sbjct: 162 WNQAIGRTLGGNLPFGSPLRQDMLRAQTAVIQNQTVKLVSSGRGFSVSAEGKALTHATEG 221 Query: 228 QMTQARTAAGQVVSGIAKAGGILEINY 254 Q R+A+G VVSGIA+AG I+E+ Y Sbjct: 222 QPVTVRSASGAVVSGIARAGAIVEVTY 248 >Q1GZW7.1 Q1GZW7_METFK Flagellar protein FlgA Length = 235 Score = 198 bits (503), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 97/207 (46%), Positives = 141/207 (68%) Query: 48 RQDLQIVQQTAEQFLKAQTAGLPGSITIQTDPIDQRMMLPACLDPQAFMPNGARLWGRTS 107 QDL ++ EQFL +Q+ GLPG +++ ID R+ L +C Q + G+R+WGRTS Sbjct: 29 HQDLTQLRVQVEQFLLSQSTGLPGKVSVSALAIDPRLKLASCDQLQMSLAAGSRIWGRTS 88 Query: 108 VGVKCVAPAPWTIYVRANVQVISDYLIAAVPLAQGQTISASDISRVRGDMSALPAGVITE 167 VGV+C AP WTIYV+ANVQV+++YL+AA PLAQG I+ D+++ GD++ LP GV T+ Sbjct: 89 VGVRCSAPQVWTIYVQANVQVMAEYLVAAAPLAQGHIITEQDLAKSHGDLAKLPPGVFTD 148 Query: 168 ESQVIGRVAGMSLRAGTPLRMDAIRNQRVVQQGQSVRVVSNGPGFQISTEARALSNANEG 227 SQ IGR + L AGT LR + +R VVQQGQ V + + G GF++S E AL++A +G Sbjct: 149 ASQAIGRAVYVPLSAGTVLRQEMLRVLPVVQQGQKVILNTMGEGFKVSAEGTALTSAGDG 208 Query: 228 QMTQARTAAGQVVSGIAKAGGILEINY 254 Q + + G+VVSG+A+ GG++E+ + Sbjct: 209 QRVKVKVGNGRVVSGLARRGGLIEVIF 235