BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0042.p (152 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISX1.1 D8ISX1_HERSS Flagellar biosynthesis/type III secretory ... 307 3e-82 A6SXV8.1 A6SXV8_JANMA Flagella synthesis protein 102 2e-20 A4G6B7.1 A4G6B7_HERAR Putative flagella synthesis protein FlgN-like 102 3e-20 F1VUD9.1 F1VUD9_9BURK Flagellar biosynthesis protein flgN 93 1e-17 D7DJ47.1 D7DJ47_METS0 FlgN family protein 82 3e-14 C6WVB3.1 C6WVB3_METML FlgN family protein 80 1e-13 C6XBV5.1 C6XBV5_METSD FlgN family protein 80 1e-13 E4QKM4.1 E4QKM4_METS6 FlgN family protein 79 2e-13 C7RLC8.1 C7RLC8_ACCPU FlgN family protein 79 2e-13 Q1GZW9.1 Q1GZW9_METFK FlgN 75 4e-12 >D8ISX1.1 D8ISX1_HERSS Flagellar biosynthesis/type III secretory pathway chaperone protein Length = 152 Score = 307 bits (786), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 152/152 (100%), Positives = 152/152 (100%) Query: 1 MNPASQLQQEQAALSRLVEKLRQEQALLADATPEGLTEVISEKATIVADMATLAGNRHAL 60 MNPASQLQQEQAALSRLVEKLRQEQALLADATPEGLTEVISEKATIVADMATLAGNRHAL Sbjct: 1 MNPASQLQQEQAALSRLVEKLRQEQALLADATPEGLTEVISEKATIVADMATLAGNRHAL 60 Query: 61 LGQLGYSEDEAGMQKWMNEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQSA 120 LGQLGYSEDEAGMQKWMNEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQSA Sbjct: 61 LGQLGYSEDEAGMQKWMNEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQSA 120 Query: 121 LTILQGKTGAGNFYGPDGQNSISASGRRLGVV 152 LTILQGKTGAGNFYGPDGQNSISASGRRLGVV Sbjct: 121 LTILQGKTGAGNFYGPDGQNSISASGRRLGVV 152 >A6SXV8.1 A6SXV8_JANMA Flagella synthesis protein Length = 158 Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 63/148 (42%), Positives = 84/148 (56%), Gaps = 1/148 (0%) Query: 3 PASQLQQEQAALSRLVEKLRQEQALLADATPEGLTEVISEKATIVADMATLAGNRHALLG 62 PA L +E A+ L + L+ EQ L A EG+T + KA A MA LA RH L Sbjct: 8 PADSLSEEHKAIRALTQLLQLEQEHLIAADVEGITALTEAKAKAAARMAELANWRHNALA 67 Query: 63 QLGYSEDEAGMQKWMNEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQSALT 122 G+ E+ M+ W+ S+T R+ W L EL + AKELNRVNG+LI K++ NQ+ L Sbjct: 68 AAGFEPTESSMKLWLESSQSKTARKSWNELVELVEVAKELNRVNGILINKQMVRNQNVLN 127 Query: 123 ILQGKTGAG-NFYGPDGQNSISASGRRL 149 ILQ T G N YGP+GQ + + GR + Sbjct: 128 ILQHGTVQGNNVYGPNGQTASKSVGRHI 155 >A4G6B7.1 A4G6B7_HERAR Putative flagella synthesis protein FlgN-like Length = 159 Score = 102 bits (253), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 64/150 (42%), Positives = 79/150 (52%), Gaps = 2/150 (1%) Query: 2 NPASQLQQEQAALSRLVEKLRQEQALLADATPEGLTEVISEKATIVADMATLAGNRHALL 61 NPA L +E A+ L E L+ EQ L A E + + KA MA LA RHALL Sbjct: 7 NPADSLSEEHKAVRALTELLQLEQEKLIAADIEAIAALTEPKAKAALHMAELAAKRHALL 66 Query: 62 GQLGYSEDEAGMQKWM-NEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQSA 120 G G+ +E GMQ W+ + S T W L LA+ KELNRVNG LI K++ NQ+ Sbjct: 67 GTAGFEANETGMQAWLGSPAASATANTSWHELIALAEAGKELNRVNGTLINKQMVRNQNV 126 Query: 121 LTILQ-GKTGAGNFYGPDGQNSISASGRRL 149 L ILQ G N YGPDGQ + R + Sbjct: 127 LNILQHGSVQGNNVYGPDGQTASKTMSRHI 156 >F1VUD9.1 F1VUD9_9BURK Flagellar biosynthesis protein flgN Length = 155 Score = 92.8 bits (229), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 63/150 (42%), Positives = 89/150 (59%), Gaps = 2/150 (1%) Query: 2 NPASQLQQEQAALSRLVEKLRQEQALLADATPEGLTEVISEKATIVADMATLAGNRHALL 61 +P++ L +EQ L++ L+QEQ L +A+ GL E+I KA V + L RHALL Sbjct: 7 DPSASLAEEQQVTKVLLQLLQQEQGKLIEASIAGLPELIQAKAEAVTRLTALTKARHALL 66 Query: 62 GQLGYSEDEAGMQKWMNEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQSAL 121 G++ E+GM+ W+ H R W AL L +A+E+NR+NG+LIG+ + NQ+ L Sbjct: 67 AAAGFAASESGMRDWVAAHQPSDTR--WTALLALGAEAREMNRINGMLIGRHMMRNQTEL 124 Query: 122 TILQGKTGAGNFYGPDGQNSISASGRRLGV 151 ILQGKT N YG DGQ++ GR L V Sbjct: 125 NILQGKTQRNNLYGADGQSTGMGRGRGLAV 154 >D7DJ47.1 D7DJ47_METS0 FlgN family protein Length = 157 Score = 82.0 bits (201), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 50/154 (32%), Positives = 83/154 (53%), Gaps = 5/154 (3%) Query: 3 PASQL----QQEQAALSRLVEKLRQEQALLADATPEGLTEVISEKATIVADMATLAGNRH 58 PAS L +Q+ ++ L+E L +EQ+ L + + + V+ EK+ ++ ++ A +R+ Sbjct: 4 PASNLMITFEQDAKLVNNLLEVLTREQSSLVLSDIDAIEAVMEEKSVLLQSISLTANSRY 63 Query: 59 ALLGQLGYSEDEAGMQKWMNEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQ 118 A L G++ +E+GM W+ T E W + AKE+NR+NG+LI K + NQ Sbjct: 64 AALAAGGFAPNESGMTTWLKSQTKPTLTESWERFQKSISQAKEMNRLNGVLINKHFNRNQ 123 Query: 119 SALTILQGKTGAGNFYGPDGQNSISASGRRLGVV 152 L LQG + YG +GQ + S SG R ++ Sbjct: 124 QLLNQLQGSSDNSGVYGKNGQ-AKSQSGSRSSLI 156 >C6WVB3.1 C6WVB3_METML FlgN family protein Length = 157 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 48/137 (35%), Positives = 70/137 (51%), Gaps = 1/137 (0%) Query: 3 PASQLQQEQAALSRLVEKLRQEQALLADATPEGLTEVISEKATIVADMATLAGNRHALLG 62 P S Q+ ++ LV L +EQA L A + V+ EK+ ++ + A +R+ L Sbjct: 9 PVS-FSQDTQLVAELVALLEREQAHLVKADVAAIEAVLEEKSLLLQRLNLAAKSRYQQLQ 67 Query: 63 QLGYSEDEAGMQKWMNEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQSALT 122 G+ +EAGM W+ + + W + AKELNR+NG+LI K + NQ L Sbjct: 68 AHGFQSNEAGMTAWVETQAKKEIKAAWMQFQKSLAQAKELNRLNGVLISKHFNRNQELLN 127 Query: 123 ILQGKTGAGNFYGPDGQ 139 LQG A + YGPDGQ Sbjct: 128 HLQGNNDANSVYGPDGQ 144 >C6XBV5.1 C6XBV5_METSD FlgN family protein Length = 152 Score = 79.7 bits (195), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 74/139 (53%) Query: 1 MNPASQLQQEQAALSRLVEKLRQEQALLADATPEGLTEVISEKATIVADMATLAGNRHAL 60 M+ + +Q+ +++L+ L +EQA L A + + +++ EKA +++++ + RH Sbjct: 1 MSTSISFEQDSQLVNQLIVLLSREQASLVRANMDEIEQILDEKAHLLSELGSTVQKRHDA 60 Query: 61 LGQLGYSEDEAGMQKWMNEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQSA 120 L +LG+ E GM W+ + ++ W ++ A+E+NRVNG+LI K S N+ Sbjct: 61 LVKLGFEGSEKGMADWLVAQKTAAVQQSWMQFHKMLVQAQEMNRVNGVLINKHFSRNEQF 120 Query: 121 LTILQGKTGAGNFYGPDGQ 139 L L G YG +GQ Sbjct: 121 LNALHAHHSPGQMYGANGQ 139 >E4QKM4.1 E4QKM4_METS6 FlgN family protein Length = 152 Score = 79.3 bits (194), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 41/139 (29%), Positives = 74/139 (53%) Query: 1 MNPASQLQQEQAALSRLVEKLRQEQALLADATPEGLTEVISEKATIVADMATLAGNRHAL 60 M+ + +Q+ +++L+ L +EQA L A + + +++ EKA +++++ + RH Sbjct: 1 MSTSISFEQDSQLVNQLIVLLSREQASLVRANMDEIEQILDEKAHLLSELGSTVQKRHDA 60 Query: 61 LGQLGYSEDEAGMQKWMNEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQSA 120 L +LG+ E GM W+ + ++ W ++ A+E+NRVNG+LI K S N+ Sbjct: 61 LVKLGFEGSEKGMADWLVAQKTVAVQQSWMQFHKMLVQAQEMNRVNGVLINKHFSRNEQF 120 Query: 121 LTILQGKTGAGNFYGPDGQ 139 L L G YG +GQ Sbjct: 121 LNALHAHHSPGQMYGANGQ 139 >C7RLC8.1 C7RLC8_ACCPU FlgN family protein Length = 158 Score = 79.0 bits (193), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 52/144 (36%), Positives = 71/144 (49%), Gaps = 2/144 (1%) Query: 7 LQQEQAALSRLVEKLRQEQALLADATPEGLTEVISEKATIVADMATLAGNRHALLGQLGY 66 ++ E A+ R + L EQ LL + L ++ +K + A + L R L G Sbjct: 12 VEAEVTAVQRFLALLELEQDLLVKGEVDELIDLARQKNELAAQITALGSGRTEALAAAGL 71 Query: 67 SEDEAGMQKWMNEHGSETD-REHWAALFELAQDAKELNRVNGLLIGKKISLNQSALTILQ 125 D G+ W+ H SET R+ W L LA A E+NR NG LI ++ N AL L Sbjct: 72 PADRRGIDAWLAVHPSETRARDAWNLLMSLAGQAHEVNRANGELIQIRMQHNAQALEALL 131 Query: 126 GKTGAGNFYGPDGQNSISASGRRL 149 G + YGPDGQN+ ASGRR+ Sbjct: 132 GSNASLTLYGPDGQNT-PASGRRI 154 >Q1GZW9.1 Q1GZW9_METFK FlgN Length = 149 Score = 74.7 bits (182), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 47/145 (32%), Positives = 72/145 (49%), Gaps = 2/145 (1%) Query: 1 MNPASQLQQEQAALSRLVEKLRQEQALLADATPEGLTEVISEKATIVADMATLAGNRHAL 60 M AS + E A L+E L++EQA L + + ++++KA ++ D+ R+ Sbjct: 1 MTTAS-FEHEIALTENLLELLKREQASLVKVDVDAMEGLLNDKARVLQDINASTQARYQA 59 Query: 61 LGQLGYSEDEAGMQKWMNEHGSETDREHWAALFELAQDAKELNRVNGLLIGKKISLNQSA 120 + LG+ DE G+ W+ + + W L AKELNRVNG+LI K+ NQ Sbjct: 60 ITGLGFGPDERGLAAWIAVQDAVIQKS-WGRFQSLIDQAKELNRVNGILISKQFRRNQQV 118 Query: 121 LTILQGKTGAGNFYGPDGQNSISAS 145 L L FYGP+GQ S ++ Sbjct: 119 LDTLGRPPSLEQFYGPNGQASTGST 143