BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0041.p (244 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISX0.1 D8ISX0_HERSS RNA polymerase sigma factor 504 e-141 F1VXQ3.1 F1VXQ3_9BURK RNA polymerase sigma factor for flagellar ... 391 e-107 A6SZS6.1 A6SZS6_JANMA RNA polymerase sigma factor 385 e-105 A4G4Q0.2 A4G4Q0_HERAR RNA polymerase sigma factor 379 e-103 D7DJ43.1 D7DJ43_METS0 RNA polymerase sigma factor 352 3e-95 C6WW78.1 C6WW78_METML RNA polymerase sigma factor 351 6e-95 E4QKN9.1 E4QKN9_METS6 RNA polymerase sigma factor 350 1e-94 C6XBW0.1 C6XBW0_METSD RNA polymerase sigma factor 350 1e-94 Q1GZX2.1 Q1GZX2_METFK RNA polymerase sigma factor 341 5e-92 A3RZD9.1 A3RZD9_RALSO RNA polymerase sigma factor 304 7e-81 >D8ISX0.1 D8ISX0_HERSS RNA polymerase sigma factor Length = 244 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 244/244 (100%), Positives = 244/244 (100%) Query: 1 MYNVKGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 MYNVKGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH Sbjct: 1 MYNVKGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH 120 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH Sbjct: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH 120 Query: 121 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREA 180 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREA Sbjct: 121 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREA 180 Query: 181 VVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHSW 240 VVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHSW Sbjct: 181 VVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHSW 240 Query: 241 SGVA 244 SGVA Sbjct: 241 SGVA 244 >F1VXQ3.1 F1VXQ3_9BURK RNA polymerase sigma factor for flagellar operon Length = 244 Score = 391 bits (1004), Expect = e-107, Method: Compositional matrix adjust. Identities = 182/244 (74%), Positives = 216/244 (88%) Query: 1 MYNVKGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 MY GK KN LL QHAPLVK+LAHQ+KAKLPPSVEVDDLIQAGM+GL DA+NRYE+TH Sbjct: 1 MYTPSGKSDKNHLLVQHAPLVKRLAHQMKAKLPPSVEVDDLIQAGMIGLFDAINRYEDTH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH 120 GAQFETYAVQRIRG+MLDELRSSDWLPRS+RQN RK+E AMQ L Q+LGR P EAE+A+H Sbjct: 61 GAQFETYAVQRIRGSMLDELRSSDWLPRSMRQNMRKIEVAMQALQQKLGRAPLEAEVAKH 120 Query: 121 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREA 180 M++SL +YQ+LL E GGHQL+YYEDFHD G+EHFLDR+ T SD+PLQ+L+N GFR+A Sbjct: 121 MKLSLAEYQNLLGEGGGHQLVYYEDFHDSSEGNEHFLDRYCTDLSDNPLQSLLNAGFRDA 180 Query: 181 VVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHSW 240 V+ +I+ALPERE+ILM LYYEQEMNLKEIGAV+GV+ESR+ QLHSQAI+RMR++LRE +W Sbjct: 181 VIRAIEALPEREKILMGLYYEQEMNLKEIGAVLGVTESRISQLHSQAIARMRAFLREKTW 240 Query: 241 SGVA 244 +GVA Sbjct: 241 TGVA 244 >A6SZS6.1 A6SZS6_JANMA RNA polymerase sigma factor Length = 243 Score = 385 bits (989), Expect = e-105, Method: Compositional matrix adjust. Identities = 183/244 (75%), Positives = 215/244 (88%), Gaps = 1/244 (0%) Query: 1 MYNVKGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 MY GK KN L+ +HAPLVKKLAHQ+KAKLPPSVEVDDLIQAGM+GLLDAV+RYEETH Sbjct: 1 MYTAAGKSDKNHLVGEHAPLVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVSRYEETH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH 120 GAQFETYAVQRIRGAMLDELRSSDW+PRS+RQN RK+E AM TL Q+LGR P E+E+A+ Sbjct: 61 GAQFETYAVQRIRGAMLDELRSSDWMPRSMRQNMRKIEVAMNTLQQRLGRPPNESEVAKQ 120 Query: 121 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREA 180 +++SL DYQ LLS+ GGHQL+YYEDFHD + +EHFLDR+ T +S DPLQNL+N GFR A Sbjct: 121 LKLSLADYQDLLSDGGGHQLVYYEDFHDSE-DNEHFLDRYCTDESPDPLQNLMNTGFRAA 179 Query: 181 VVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHSW 240 V+++I+ALPERE+ILM LYYEQEMNLKEIGAVMGV+ESRV QLHSQAI+RMR+ LRE +W Sbjct: 180 VIEAIQALPEREKILMGLYYEQEMNLKEIGAVMGVTESRVSQLHSQAIARMRANLREKAW 239 Query: 241 SGVA 244 +GVA Sbjct: 240 TGVA 243 >A4G4Q0.2 A4G4Q0_HERAR RNA polymerase sigma factor Length = 243 Score = 379 bits (974), Expect = e-103, Method: Compositional matrix adjust. Identities = 179/244 (73%), Positives = 214/244 (87%), Gaps = 1/244 (0%) Query: 1 MYNVKGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 MY G+ ++ L+ +HAPLVKKLAHQ+KAKLPPSVEVDDLIQAGM+GLLDAV RYEETH Sbjct: 1 MYTAAGRSDRDHLVSEHAPLVKKLAHQMKAKLPPSVEVDDLIQAGMIGLLDAVGRYEETH 60 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH 120 GAQFETYAVQRIRGAMLDELRSSDW+PRS+RQN RK+E AM +L Q+LGR P E+E+A+ Sbjct: 61 GAQFETYAVQRIRGAMLDELRSSDWMPRSMRQNMRKIEVAMNSLQQKLGRPPNESEVAKQ 120 Query: 121 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREA 180 +++SL DYQ LLS+ GGHQL+YYEDFHD + +EHFLDR+ T +S DPLQNL+N GFR A Sbjct: 121 LKLSLADYQDLLSDGGGHQLVYYEDFHDSE-DNEHFLDRYCTDESPDPLQNLMNTGFRSA 179 Query: 181 VVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHSW 240 V+ +I+ALPERE+ILM+LYYEQEMNLKEIGAVMGV+ESRV QLHSQAI+RMR+ LRE +W Sbjct: 180 VIAAIEALPEREKILMSLYYEQEMNLKEIGAVMGVTESRVSQLHSQAIARMRANLREKAW 239 Query: 241 SGVA 244 +GVA Sbjct: 240 TGVA 243 >D7DJ43.1 D7DJ43_METS0 RNA polymerase sigma factor Length = 244 Score = 352 bits (903), Expect = 3e-95, Method: Compositional matrix adjust. Identities = 167/245 (68%), Positives = 204/245 (83%), Gaps = 2/245 (0%) Query: 1 MYNVKGKKG-KNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEET 59 MY + GKK K++LL +HA LVKKLA+QLKAKLPPSVE+DDLIQAGMMGLLDA+NRYE+T Sbjct: 1 MYTIHGKKDQKDELLNKHAVLVKKLAYQLKAKLPPSVELDDLIQAGMMGLLDAINRYEDT 60 Query: 60 HGAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQ 119 HGAQFETYA QRIRG+MLDELRS+DWLPRS+R++ R VE A+ L QQLG+ P E E+A+ Sbjct: 61 HGAQFETYAAQRIRGSMLDELRSADWLPRSVRKSMRDVEIAISQLEQQLGKPPTENEVAK 120 Query: 120 HMQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFRE 179 +Q+SL DY +L +C GHQLIYYEDFH+ + G EHFLDR + DP+++L+ G FRE Sbjct: 121 KLQLSLSDYYDMLGDCSGHQLIYYEDFHESENG-EHFLDRFNADTTGDPIKSLLEGDFRE 179 Query: 180 AVVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHS 239 A+V +I ALPERE+ILM LYYEQE+NLKEIGAVM VSESRVCQLHSQA++R+RS L+E S Sbjct: 180 ALVGAITALPEREKILMGLYYEQELNLKEIGAVMNVSESRVCQLHSQAVARLRSNLKEKS 239 Query: 240 WSGVA 244 W+G Sbjct: 240 WTGAV 244 >C6WW78.1 C6WW78_METML RNA polymerase sigma factor Length = 244 Score = 351 bits (900), Expect = 6e-95, Method: Compositional matrix adjust. Identities = 168/245 (68%), Positives = 203/245 (82%), Gaps = 2/245 (0%) Query: 1 MYNVKGKKGKND-LLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEET 59 MY GKK + D LL+QHA LVKKLA+QLKAKLPPSVE+DDLIQAGMMGLLDAVNRYE+T Sbjct: 1 MYTAHGKKDQKDVLLDQHAILVKKLAYQLKAKLPPSVELDDLIQAGMMGLLDAVNRYEDT 60 Query: 60 HGAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQ 119 HGAQFETYA QRIRGAMLDELRSSDWLPRSIR+N R VE A+ L QQLG+ P E ++A+ Sbjct: 61 HGAQFETYAAQRIRGAMLDELRSSDWLPRSIRKNMRDVENAISQLEQQLGQSPTENDVAK 120 Query: 120 HMQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFRE 179 + +SL +Y +L +C GHQLIYYEDFH+ D G EHFLDR QT +DP++ L+ G F++ Sbjct: 121 KLNMSLAEYHEMLGDCSGHQLIYYEDFHEADSG-EHFLDRFQTDHDNDPIKGLLIGDFKD 179 Query: 180 AVVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHS 239 A++ +I +LPERE+IL+ LYYEQE+NLKEIGAVM VSESRVCQLHSQA++R+R+ LRE S Sbjct: 180 ALIGAIDSLPEREKILLGLYYEQELNLKEIGAVMSVSESRVCQLHSQAVARLRANLREKS 239 Query: 240 WSGVA 244 W+G Sbjct: 240 WTGAV 244 >E4QKN9.1 E4QKN9_METS6 RNA polymerase sigma factor Length = 244 Score = 350 bits (897), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 164/245 (66%), Positives = 203/245 (82%), Gaps = 2/245 (0%) Query: 1 MYNVKGKKGKND-LLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEET 59 MY GK + D LL QHA LVKKLA+QLKAKLPPSVE+DDL+QAGMMGLLDA+NRYE+T Sbjct: 1 MYTATGKPNQKDSLLHQHATLVKKLAYQLKAKLPPSVELDDLVQAGMMGLLDAINRYEDT 60 Query: 60 HGAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQ 119 HGAQFETYA QRIRGAM+DELR++DWLPRSIR+N R VE A+ L Q LGR P E E+A+ Sbjct: 61 HGAQFETYAAQRIRGAMIDELRNADWLPRSIRKNMRDVEGAINQLEQVLGRPPTEGEVAK 120 Query: 120 HMQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFRE 179 +++SL+DY +L EC GHQL+YYEDFH+ +GG +HFLDR DS +P++ L++ FRE Sbjct: 121 QLKMSLDDYYDMLGECSGHQLLYYEDFHESEGG-DHFLDRFLQDDSGNPIKGLLDSNFRE 179 Query: 180 AVVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHS 239 ++++I+ LPEREQILM LYYEQE+NLKEIGAVM VSESRVCQLHSQAI+R+R+Y++E Sbjct: 180 TLIEAIENLPEREQILMGLYYEQELNLKEIGAVMNVSESRVCQLHSQAIARLRAYMKEQL 239 Query: 240 WSGVA 244 W+G A Sbjct: 240 WTGAA 244 >C6XBW0.1 C6XBW0_METSD RNA polymerase sigma factor Length = 244 Score = 350 bits (897), Expect = 1e-94, Method: Compositional matrix adjust. Identities = 164/245 (66%), Positives = 203/245 (82%), Gaps = 2/245 (0%) Query: 1 MYNVKGKKGKND-LLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEET 59 MY GK + D LL QHA LVKKLA+QLKAKLPPSVE+DDL+QAGMMGLLDA+NRYE+T Sbjct: 1 MYTATGKPNQKDSLLHQHATLVKKLAYQLKAKLPPSVELDDLVQAGMMGLLDAINRYEDT 60 Query: 60 HGAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQ 119 HGAQFETYA QRIRGAM+DELR++DWLPRSIR+N R VE A+ L Q LGR P E E+A+ Sbjct: 61 HGAQFETYAAQRIRGAMIDELRNADWLPRSIRKNMRDVEGAINQLEQVLGRPPTEGEVAK 120 Query: 120 HMQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFRE 179 +++SL+DY +L EC GHQL+YYEDFH+ +GG +HFLDR DS +P++ L++ FRE Sbjct: 121 QLKMSLDDYYDMLGECSGHQLLYYEDFHESEGG-DHFLDRFLQDDSGNPIKGLLDSNFRE 179 Query: 180 AVVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHS 239 ++++I+ LPEREQILM LYYEQE+NLKEIGAVM VSESRVCQLHSQAI+R+R+Y++E Sbjct: 180 TLIEAIENLPEREQILMGLYYEQELNLKEIGAVMNVSESRVCQLHSQAIARLRAYMKEQL 239 Query: 240 WSGVA 244 W+G A Sbjct: 240 WTGAA 244 >Q1GZX2.1 Q1GZX2_METFK RNA polymerase sigma factor Length = 244 Score = 341 bits (875), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 158/245 (64%), Positives = 203/245 (82%), Gaps = 2/245 (0%) Query: 1 MYNVKGKKG-KNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEET 59 MY + GK K +LL+QHA LVKK+A+QLKAKLP SV++DDLIQAGMMGLLDA NRYE+ Sbjct: 1 MYTLHGKTSPKEELLKQHASLVKKIAYQLKAKLPASVDIDDLIQAGMMGLLDASNRYEDN 60 Query: 60 HGAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQ 119 HGAQFETYA QRIRG+M+DELR +DWLPRS+R+N R VE A+ L Q+LGR P E ELA+ Sbjct: 61 HGAQFETYAAQRIRGSMIDELRRADWLPRSVRKNMRDVESAVHLLEQKLGRPPTEGELAR 120 Query: 120 HMQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFRE 179 + +S++D+Q +L +C GHQLIYYEDF + D G +HFLDR+Q+ DS DPL+ L++ FRE Sbjct: 121 ELNLSMDDFQGMLDDCSGHQLIYYEDFSEQDSG-DHFLDRYQSDDSGDPLKALLSSDFRE 179 Query: 180 AVVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHS 239 A++++I+ALPERE+ILM LYYEQEMNLK+IGA+M VSESRVCQLH+QA++R+R+ L+E Sbjct: 180 ALIEAIEALPEREKILMGLYYEQEMNLKDIGAIMSVSESRVCQLHTQAVARLRAKLKEKL 239 Query: 240 WSGVA 244 W+G Sbjct: 240 WTGAV 244 >A3RZD9.1 A3RZD9_RALSO RNA polymerase sigma factor Length = 253 Score = 304 bits (779), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 142/240 (59%), Positives = 187/240 (77%), Gaps = 2/240 (0%) Query: 1 MYNVKGKKGKNDLLEQHAPLVKKLAHQLKAKLPPSVEVDDLIQAGMMGLLDAVNRYEETH 60 MY G+K K+D + +APLV+++A+Q+ KLP SVE+DDLIQAGMMGLLDA++RYEET Sbjct: 11 MYTATGRKTKSDEMAAYAPLVRRIANQMMVKLPASVELDDLIQAGMMGLLDALSRYEETQ 70 Query: 61 GAQFETYAVQRIRGAMLDELRSSDWLPRSIRQNARKVEEAMQTLLQQLGRQPKEAELAQH 120 G QFE YA QRIRGA+LDELR SDWLPR +R+NAR +E+A+Q L QQ GR P E E+A Sbjct: 71 GVQFEFYAAQRIRGAILDELRGSDWLPRGLRRNARTIEQAIQKLQQQKGRAPTETEIAAA 130 Query: 121 MQISLEDYQSLLSECGGHQLIYYEDFHDDDGGHEHFLDRHQTSDSDDPLQNLINGGFREA 180 +++SL DYQ LL E G QL+YYEDF +D + F++ + PL L++ RE+ Sbjct: 131 LEMSLADYQKLLVELQGSQLLYYEDFDREDA--DAFIENRAAENDATPLDQLLDHDLRES 188 Query: 181 VVDSIKALPEREQILMALYYEQEMNLKEIGAVMGVSESRVCQLHSQAISRMRSYLREHSW 240 VV +I+ALPERE+++M+LYYEQ++NL+EIGAVMGVSESRVCQ+HSQAI+R+R+ LRE +W Sbjct: 189 VVAAIEALPEREKLMMSLYYEQDLNLREIGAVMGVSESRVCQIHSQAIARIRARLRERAW 248