BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0039.p (494 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8ISI3.1 D8ISI3_HERSS Flagellar biosynthesis GTP-binding protein 1009 0.0 F1VXQ5.1 F1VXQ5_9BURK Flagellar biosynthesis protein FlhF 556 e-156 A4G4P8.1 A4G4P8_HERAR Putative flagellar biosynthesis regulator ... 504 e-140 A6SZS8.1 A6SZS8_JANMA FlhF flagellar biosynthesis protein 498 e-139 E4QKP1.1 E4QKP1_METS6 GTP-binding signal recognition particle SR... 457 e-126 C6XBW2.1 C6XBW2_METSD GTP-binding signal recognition particle SR... 456 e-126 D7DJ41.1 D7DJ41_METS0 Flagellar biosynthetic protein FlhF 456 e-126 Q1GZX4.1 Q1GZX4_METFK GTP-binding signal recognition particle SR... 432 e-119 C6WXW0.1 C6WXW0_METML GTP-binding signal recognition particle SR... 413 e-113 C6WW76.1 C6WW76_METML GTP-binding signal recognition particle SR... 413 e-113 >D8ISI3.1 D8ISI3_HERSS Flagellar biosynthesis GTP-binding protein Length = 494 Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust. Identities = 494/494 (100%), Positives = 494/494 (100%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP Sbjct: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 Query: 61 SGRPQAASLQQQSGLPPAQQPRRPALLSSPPAQARPAREGAPLLDQPGSERSQARAEAAP 120 SGRPQAASLQQQSGLPPAQQPRRPALLSSPPAQARPAREGAPLLDQPGSERSQARAEAAP Sbjct: 61 SGRPQAASLQQQSGLPPAQQPRRPALLSSPPAQARPAREGAPLLDQPGSERSQARAEAAP 120 Query: 121 AADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFDGKDYDEILSEVMSE 180 AADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFDGKDYDEILSEVMSE Sbjct: 121 AADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFDGKDYDEILSEVMSE 180 Query: 181 IRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSKSQDI 240 IRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSKSQDI Sbjct: 181 IRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSKSQDI 240 Query: 241 MFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGKLAL 300 MFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGKLAL Sbjct: 241 MFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGKLAL 300 Query: 301 ITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQM 360 ITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQM Sbjct: 301 ITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQM 360 Query: 361 VAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVL 420 VAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVL Sbjct: 361 VAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVL 420 Query: 421 DVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVIGPTA 480 DVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVIGPTA Sbjct: 421 DVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVIGPTA 480 Query: 481 MSMNDKGLREVSFG 494 MSMNDKGLREVSFG Sbjct: 481 MSMNDKGLREVSFG 494 >F1VXQ5.1 F1VXQ5_9BURK Flagellar biosynthesis protein FlhF Length = 443 Score = 556 bits (1434), Expect = e-156, Method: Compositional matrix adjust. Identities = 295/497 (59%), Positives = 351/497 (70%), Gaps = 57/497 (11%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 MNVKKF A+SSR+A RQVREALGPDAVILSNRNI VEILA+A+EDM++L AP ++ Sbjct: 1 MNVKKFSASSSRDALRQVREALGPDAVILSNRNINGQVEILALASEDMSSLAAPVIEKE- 59 Query: 61 SGRPQAASLQQQSGLPPAQQPRRPALLSSPPAQARPAREGAPLLDQPGSERSQARA---E 117 +L Q LP + R A R++ +A + Sbjct: 60 -------TLIAQVALPAQEATVRSAF---------------------AKRRTEFKADTDQ 91 Query: 118 AAPAADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFDGKDYDEILSEV 177 A+ A A ++RD+ R PA P S L E ++E+ Sbjct: 92 ASGLAGALEQSQQSRDA-----RVPEPAA-----------PISVLRE---------MAEM 126 Query: 178 MSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSKS 237 M+E+RSMR ++E+Q +E+SW QKREP+K ++L+E+LAAGFSASLSR + ENLPA + Sbjct: 127 MNELRSMRTMMESQFSELSWSSQQKREPVKAVILRELLAAGFSASLSRYLIENLPAGGTA 186 Query: 238 QDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGK 297 M W+K+V+ARN+N + +E+ +LE GGVFA+VGPTGVGKTTTTAKLAARCVMRHG GK Sbjct: 187 AAGMSWIKTVMARNINAITDESAMLEQGGVFALVGPTGVGKTTTTAKLAARCVMRHGPGK 246 Query: 298 LALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQR 357 LALI TDGYRIGGYEQLRIYGKILGVMVHSVKDE+DLRIAL+ELK KHTVLIDT GV QR Sbjct: 247 LALIPTDGYRIGGYEQLRIYGKILGVMVHSVKDESDLRIALDELKNKHTVLIDTVGVSQR 306 Query: 358 DQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIG 417 D MV EQ AML GAG +KRLLCLNAT+TG TLNEVV AY SGLAGC++TKLDEAATIG Sbjct: 307 DHMVTEQVAMLQGAGSRVKRLLCLNATSTGETLNEVVRAYQGSGLAGCVMTKLDEAATIG 366 Query: 418 NVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELPGVIG 477 +VLDVVIR KLNL YVANGQRVPEDLHVANK YL DRAFK KRE+ PF+F + ELP V+G Sbjct: 367 SVLDVVIRQKLNLFYVANGQRVPEDLHVANKQYLVDRAFKLKRESKPFQFTDAELPLVMG 426 Query: 478 PTAMSMNDKGLREVSFG 494 T + NDK LREV G Sbjct: 427 GTTRASNDKSLREVHLG 443 >A4G4P8.1 A4G4P8_HERAR Putative flagellar biosynthesis regulator FlhF Length = 423 Score = 504 bits (1299), Expect = e-140, Method: Compositional matrix adjust. Identities = 242/321 (75%), Positives = 271/321 (84%) Query: 174 LSEVMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPA 233 L VMSEIRSMRG+LE QLAE++W KREP K VL+EMLAAGFSASL+R +TE +PA Sbjct: 103 LHSVMSEIRSMRGMLEMQLAELAWTDQHKREPAKSSVLREMLAAGFSASLARYLTERMPA 162 Query: 234 NSKSQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRH 293 + Q M W+K++L RNL T+ NENE+LE GGV+A+VGPTGVGKTTTTAKLAARCVMRH Sbjct: 163 GASKQSGMDWIKAILTRNLATIGNENEILEKGGVYALVGPTGVGKTTTTAKLAARCVMRH 222 Query: 294 GSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAG 353 G GKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDE DLRIAL+ELKGKHTVLIDT G Sbjct: 223 GPGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDEADLRIALDELKGKHTVLIDTVG 282 Query: 354 VGQRDQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEA 413 V QRD MVAEQ AML+GAG +KRLLCLNAT+TG TLNEV +Y GLAGCI+TKLDEA Sbjct: 283 VSQRDNMVAEQIAMLSGAGSQVKRLLCLNATSTGETLNEVARSYMGDGLAGCILTKLDEA 342 Query: 414 ATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELP 473 ATIG+ LDVVIR KLNL+YVANGQRVPEDLHVAN+ YL DRAFK KRETAPF+F + E+P Sbjct: 343 ATIGSALDVVIRQKLNLYYVANGQRVPEDLHVANQQYLVDRAFKLKRETAPFQFSDAEIP 402 Query: 474 GVIGPTAMSMNDKGLREVSFG 494 V+ TA +MNDK LREV G Sbjct: 403 LVMANTAKAMNDKSLREVILG 423 Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 37/54 (68%), Positives = 43/54 (79%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAP 54 MNV+KF A++SR AW VREALGPDAVILSNR + GVEILA+A EDM +L P Sbjct: 1 MNVRKFTASTSRGAWSLVREALGPDAVILSNRAVEGGVEILALAGEDMASLAEP 54 >A6SZS8.1 A6SZS8_JANMA FlhF flagellar biosynthesis protein Length = 421 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 240/321 (74%), Positives = 272/321 (84%) Query: 174 LSEVMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPA 233 L+ +MSEIRSMRG+LE QL+E++W QKREP+K VL+EMLAAGFSASL+R + LPA Sbjct: 101 LNNMMSEIRSMRGMLEIQLSELAWNDPQKREPVKSTVLREMLAAGFSASLARYLIARLPA 160 Query: 234 NSKSQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRH 293 + +Q M W+KS+LARNL T+ +ENE+LE GGV+A+VGPTGVGKTTTTAKLAARCVMRH Sbjct: 161 GASNQSGMEWIKSILARNLATIGDENEILEKGGVYALVGPTGVGKTTTTAKLAARCVMRH 220 Query: 294 GSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAG 353 G KLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDE DLRIAL+ELKGKHTVLIDT G Sbjct: 221 GPSKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDEADLRIALDELKGKHTVLIDTVG 280 Query: 354 VGQRDQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEA 413 V QRDQMVA+Q AMLTGAG +KRLLCLNAT+TG TLNEVV +Y GLAGCI+TKLDEA Sbjct: 281 VSQRDQMVADQIAMLTGAGDQVKRLLCLNATSTGETLNEVVRSYMGDGLAGCILTKLDEA 340 Query: 414 ATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFEFQEGELP 473 ATIG+ LDVVIR KLNL+YVANGQRVPEDLHVAN+ YL DRAFK KRETAPF+ + E+P Sbjct: 341 ATIGSALDVVIRQKLNLYYVANGQRVPEDLHVANQQYLVDRAFKLKRETAPFQLGDAEIP 400 Query: 474 GVIGPTAMSMNDKGLREVSFG 494 V+ T MNDK LREV G Sbjct: 401 AVMANTVRGMNDKSLREVILG 421 Score = 84.0 bits (206), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 50/96 (52%), Positives = 59/96 (61%), Gaps = 8/96 (8%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 MNV+KF A++SR AW VREALGPDAVILSNR I GVEILA+A EDM +L P R Sbjct: 1 MNVRKFTASTSRGAWSLVREALGPDAVILSNRAIDGGVEILALAGEDMASLAEPMVERAA 60 Query: 61 SGRPQAASLQQQSGLPPAQQPRRPA--LLSSPPAQA 94 AS L P +P +PA L+S AQ+ Sbjct: 61 ISETTLAS------LVPHHKPSQPAPLALTSNAAQS 90 >E4QKP1.1 E4QKP1_METS6 GTP-binding signal recognition particle SRP54 G-domain protein Length = 451 Score = 457 bits (1177), Expect = e-126, Method: Compositional matrix adjust. Identities = 252/482 (52%), Positives = 313/482 (64%), Gaps = 46/482 (9%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 MN+K+F A+SSREA VR++LG DAVILSNR + G EILA EDM + ++ Sbjct: 1 MNIKRFFASSSREALAMVRKSLGEDAVILSNRAVNGGNEILAFKEEDMASFMSDDTPVQS 60 Query: 61 SGRPQAASLQQQSGLPPAQQP-RRPALLSSPPAQARPAREGAPLLDQPGSERSQARAEAA 119 S R A PA +P + + P R+ AP R E A Sbjct: 61 SKRRAA----------PAMEPLQAAQARPAARQARPPVRQAAP----EAEPYRAVRTEPA 106 Query: 120 PAADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFDGKDYDEILSEVMS 179 P AR + T A A APQ +Q ++++++ Sbjct: 107 PTTTARPKVTTT----------PAQAAAPQSNKQ--------------------INDMLN 136 Query: 180 EIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSKSQD 239 EIR+MR V+E+QL EISWG Q R+P+K L +L+AGFSA+LSR I EN+P + S + Sbjct: 137 EIRNMRSVIESQLVEISWGNIQHRDPVKSNTLNMLLSAGFSAALSRQIAENMPDHRTSAE 196 Query: 240 IMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGKLA 299 WV+S+L +NL + NE+E+L GGVFA++GPTGVGKTTTTAKLAAR VM+HG GKL Sbjct: 197 ANTWVQSILEKNLQAIPNEDEILNRGGVFALIGPTGVGKTTTTAKLAARFVMKHGPGKLG 256 Query: 300 LITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQ 359 LITTD YRIGG+EQLRIYGKILGVMVH+VKDE DL+IALEELKGKHT+LIDT GV Q+D+ Sbjct: 257 LITTDAYRIGGHEQLRIYGKILGVMVHAVKDEADLKIALEELKGKHTILIDTVGVSQKDR 316 Query: 360 MVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNV 419 MVAEQ AML+ IK+LLCLNAT TG TL +VV AY L GCIITKLDEAATIG+ Sbjct: 317 MVAEQIAMLSSTRQPIKKLLCLNATNTGETLTDVVRAYKVKQLDGCIITKLDEAATIGSA 376 Query: 420 LDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQ-KRETAPFEFQEGELPGVIGP 478 LDV+IR KL L+YVANGQRVPEDLHVANK L RAF+ + T+ F+F+ ELP ++G Sbjct: 377 LDVIIREKLRLYYVANGQRVPEDLHVANKKLLIHRAFRAGAQNTSSFQFKHNELPFLMGN 436 Query: 479 TA 480 T+ Sbjct: 437 TS 438 >C6XBW2.1 C6XBW2_METSD GTP-binding signal recognition particle SRP54 G-domain protein Length = 452 Score = 456 bits (1173), Expect = e-126, Method: Compositional matrix adjust. Identities = 254/483 (52%), Positives = 317/483 (65%), Gaps = 47/483 (9%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 MN+K+F A+SSREA VR++LG DAVILSNR + G EILA EDM + ++ Sbjct: 1 MNIKRFFASSSREALAMVRKSLGEDAVILSNRAVNGGNEILAFKEEDMASFMSDDTPVQS 60 Query: 61 SGRPQAASLQQQSGLPPAQQP-RRPALLSSPPAQARPAREGAPLLDQPGSERSQA-RAEA 118 S R A PA +P + + P R+ A P +E +A R E Sbjct: 61 SKRRAA----------PAMEPLQAAQARPAARQARPPVRQQAA----PEAEPYRAVRTEP 106 Query: 119 APAADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFDGKDYDEILSEVM 178 AP AR + T A A APQ +Q +++++ Sbjct: 107 APTTTARPKVTTT----------PAQAAAPQSNKQ--------------------INDML 136 Query: 179 SEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSKSQ 238 +EIR+MR V+E+QL EISWG Q R+P+K L +L+AGFSA+LSR I EN+P + S Sbjct: 137 NEIRNMRSVIESQLVEISWGNIQHRDPVKSNTLNMLLSAGFSAALSRQIAENMPDHRTSA 196 Query: 239 DIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGKL 298 + WV+S+L +NL + NE+E+L GGVFA++GPTGVGKTTTTAKLAAR VM+HG GKL Sbjct: 197 EANTWVQSILEKNLQAIPNEDEILNRGGVFALIGPTGVGKTTTTAKLAARFVMKHGPGKL 256 Query: 299 ALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRD 358 LITTD YRIGG+EQLRIYGKILGVMVH+VKDE DL+IALEELKGKHT+LIDT GV Q+D Sbjct: 257 GLITTDAYRIGGHEQLRIYGKILGVMVHAVKDEADLKIALEELKGKHTILIDTVGVSQKD 316 Query: 359 QMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGN 418 +MVAEQ AML+ IK+LLCLNAT TG TL +VV AY L GCIITKLDEAATIG+ Sbjct: 317 RMVAEQIAMLSSTRQPIKKLLCLNATNTGETLTDVVRAYKVKQLDGCIITKLDEAATIGS 376 Query: 419 VLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQ-KRETAPFEFQEGELPGVIG 477 LDV+IR KL L+YVANGQRVPEDLHVANK L RAF+ + T+ F+F+ ELP ++G Sbjct: 377 ALDVIIREKLRLYYVANGQRVPEDLHVANKKLLIHRAFRAGAQNTSSFQFKHNELPFLMG 436 Query: 478 PTA 480 T+ Sbjct: 437 NTS 439 >D7DJ41.1 D7DJ41_METS0 Flagellar biosynthetic protein FlhF Length = 495 Score = 456 bits (1172), Expect = e-126, Method: Compositional matrix adjust. Identities = 254/500 (50%), Positives = 321/500 (64%), Gaps = 41/500 (8%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 MN+K+F +SREA VR+ LG +AVILSNR + G EI+A EDM +VA RD Sbjct: 1 MNIKRFFGKNSREALSMVRKELGENAVILSNRAMNGGNEIMAFKEEDMNAMVA----RDE 56 Query: 61 SGRPQAASLQQQSGLPPAQQPRRPALLSSPPAQARPAREGAPLLDQPGSERSQARAE--- 117 + Q S ++S P LLS ++ R A SE A E Sbjct: 57 N---QQRSFSEESN-------DAPTLLS---LLSKNNRNKAADTHMDNSESLPAEIEDYD 103 Query: 118 -----AAPAADARVWRSRTRDSGNAQRRAAAPA--GAPQGQEQEQ-DRPRSA-------- 161 A +A + R AQ RA AP PQ +Q RP + Sbjct: 104 EIVRRAELKNNAAMNRQAEVQKQAAQPRATAPIRPATPQKPAMQQASRPAAPVRQPASPN 163 Query: 162 -LPEFDGKDYDEILSEVMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFS 220 LP + ++++++E+R+MR V+E+QL ISWG Q+R+P+K +L +L+AGFS Sbjct: 164 PLPSIQS---SQQMTDMLNEMRNMRSVIESQLTAISWGNIQQRDPIKSKMLSTLLSAGFS 220 Query: 221 ASLSRLITENLPANSKSQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTT 280 A+LSR +TE +P N + M W+K++L+ NLNT+ NE E+L+ GG+FA++GPTGVGKTT Sbjct: 221 AALSRQLTEKMPENLSEEKAMAWIKAILSINLNTIENETEVLDQGGIFALIGPTGVGKTT 280 Query: 281 TTAKLAARCVMRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEE 340 TTAKLAAR VM+HG+ L +ITTD YRIGG+EQLRIYGKILGVMVH+VKDE DL+IAL E Sbjct: 281 TTAKLAARYVMKHGTENLGIITTDAYRIGGHEQLRIYGKILGVMVHAVKDEADLKIALNE 340 Query: 341 LKGKHTVLIDTAGVGQRDQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSS 400 LK KHTVLIDT GV QRD+MVAEQ AML+ + +K+LLCLNAT+TG TL +V+ AY Sbjct: 341 LKNKHTVLIDTVGVSQRDRMVAEQIAMLSSTNMPVKKLLCLNATSTGETLTDVIKAYKRK 400 Query: 401 GLAGCIITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKR 460 GL GCIITKLDEAATIGN LDVVIR KL L+YVANGQRVPED+H+ANK YL A K K Sbjct: 401 GLEGCIITKLDEAATIGNALDVVIREKLKLYYVANGQRVPEDIHLANKAYLIQHALKLKS 460 Query: 461 -ETAPFEFQEGELPGVIGPT 479 PF+F ELP V+G T Sbjct: 461 INNQPFQFLSDELPFVMGNT 480 >Q1GZX4.1 Q1GZX4_METFK GTP-binding signal recognition particle SRP54, G-domain Length = 536 Score = 432 bits (1110), Expect = e-119, Method: Compositional matrix adjust. Identities = 231/484 (47%), Positives = 315/484 (65%), Gaps = 29/484 (5%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 MN+K++ +SREA V++ LG +AVILSNR + G E+LA EDM LVA Sbjct: 1 MNIKRYFGKNSREALNMVKQELGANAVILSNRAVEGGNEVLAFREEDMAALVARDKPTPS 60 Query: 61 SGRPQAASLQQQSGLPPAQQPRRPALLSSPPAQARPAREGAPLLDQPGSERSQARAEAAP 120 + + + + L + L + P + + L S+ A AA Sbjct: 61 PAKVRHSPADTEETLVSMLNRNQRILKPAEPLNQQQLLQQRSLATGSKGTHSEPHATAAA 120 Query: 121 AADARVWRSRTRDSGNAQRRAAAPAGAPQ-GQEQEQDRPRSALPEFDGKDYDEILSEVMS 179 + RSR AG+ Q GQ++ R L+ +M Sbjct: 121 QVAKPLVRSREH------------AGSEQPGQDRLAQRE---------------LAHMMQ 153 Query: 180 EIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSKSQD 239 E+RSMRG +E+QL EI+W Q+R+P+K +L +M++AGFSA L+R I E +PA+ + Sbjct: 154 ELRSMRGAIESQLTEITWANIQQRDPVKSNILGKMISAGFSAGLARQIAEKVPADHSETN 213 Query: 240 IMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGKLA 299 M W+++V++ N++T+++E ++L+ GG++A+VGPTGVGKTTTTAKLAAR VM+HG KLA Sbjct: 214 AMKWLQNVISNNIHTISDEQQILDQGGIYALVGPTGVGKTTTTAKLAARFVMKHGPRKLA 273 Query: 300 LITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQ 359 LITTD YRIGG+EQLRIYGKILGVMVH+VKDE DLRIAL ELKGKHT+LIDT GV QRD+ Sbjct: 274 LITTDSYRIGGHEQLRIYGKILGVMVHAVKDEADLRIALNELKGKHTILIDTVGVSQRDR 333 Query: 360 MVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNV 419 MVAEQ AML+ G+ IK++LC+NAT++G TL +V+ Y GL G IITKLDEAA+IG+V Sbjct: 334 MVAEQIAMLSKTGLPIKKILCMNATSSGETLVDVMDVYKRYGLDGGIITKLDEAASIGSV 393 Query: 420 LDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAP-FEFQEGELPGVIGP 478 LD++IR +L L+YVANGQRVPED+H+AN +LA AFK R+ A F+F+E E+P ++ Sbjct: 394 LDIIIRERLKLYYVANGQRVPEDIHLANNHFLAHHAFKMTRQKAEQFQFREAEMPFLMAN 453 Query: 479 TAMS 482 A S Sbjct: 454 VATS 457 >C6WXW0.1 C6WXW0_METML GTP-binding signal recognition particle SRP54 G-domain protein Length = 459 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 225/498 (45%), Positives = 301/498 (60%), Gaps = 62/498 (12%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 MN+K+F +SREA +QVR LG DA+ILSNR + G I A+ ED+ +V + Sbjct: 1 MNIKQFFGINSREALKQVRMELGEDAIILSNRVVDGGNRITALKEEDLDAIVDNVATMEA 60 Query: 61 SGRPQAASL-------------QQQSGLPPAQ-QPRRPALLSSPPAQARPAREGAPLLDQ 106 S R ++ G Q QP P+++ P P + P Q Sbjct: 61 SYRNHTEGFGEDNPSALISVINKKIEGFHSNQAQPFAPSMIE--PEAPTPKIDAEPFFAQ 118 Query: 107 PGSERSQARAEAAPAADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFD 166 P A+AAP D + S Sbjct: 119 P-------VAQAAP--DTMMQASML----------------------------------- 134 Query: 167 GKDYDEILSEVMSEIRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRL 226 D + ++E+++E+RSMR V E+QL I+W TQ++ P K +L +L++GFSA+L+R+ Sbjct: 135 --DASQKMTEILNEMRSMRDVFESQLTTIAWSNTQQQYPTKTRILNILLSSGFSAALARM 192 Query: 227 ITENLPANSKSQDIMFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLA 286 ++E +PAN + WVK++L++NL+ L +E +L+ GG+FA++GPTGVGKTTTTAKLA Sbjct: 193 LSEKMPANLNEAKALAWVKAILSKNLDNLPSEMGMLDQGGIFALIGPTGVGKTTTTAKLA 252 Query: 287 ARCVMRHGSGKLALITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHT 346 AR VM+HG+ L LITTD YRIGG+EQLRIYGKILGVMVH+VKDE DL+IAL ELK K T Sbjct: 253 ARYVMKHGTESLGLITTDAYRIGGHEQLRIYGKILGVMVHAVKDEADLKIALNELKNKRT 312 Query: 347 VLIDTAGVGQRDQMVAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCI 406 +LIDT GV QRD MV EQ AML+ IK+LLCLNAT+TG TL +V+ AY GL G I Sbjct: 313 ILIDTVGVSQRDTMVTEQIAMLSNTNAGIKKLLCLNATSTGETLTDVIRAYKGKGLDGTI 372 Query: 407 ITKLDEAATIGNVLDVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKRETAPFE 466 ITKLDEA TIG VLDV+IR KL L+Y+ANGQRVPED+H++NK YL +A K + + Sbjct: 373 ITKLDEAVTIGGVLDVIIRGKLKLYYLANGQRVPEDIHLSNKSYLIQKALKIGADGRSLQ 432 Query: 467 FQEGELPGVIGPTAMSMN 484 F+ ELP ++ T ++N Sbjct: 433 FKNEELPFIMANTRPTVN 450 >C6WW76.1 C6WW76_METML GTP-binding signal recognition particle SRP54 G-domain protein Length = 427 Score = 413 bits (1062), Expect = e-113, Method: Compositional matrix adjust. Identities = 226/478 (47%), Positives = 291/478 (60%), Gaps = 65/478 (13%) Query: 1 MNVKKFIANSSREAWRQVREALGPDAVILSNRNIPDGVEILAMANEDMTTLVAPTGARDP 60 MN++++ +SREA VR+ LG DAVILSNR + DG EI+A + E+M T+V T Sbjct: 1 MNIRRYFGKNSREALAIVRKELGDDAVILSNRAVSDGNEIMAFSAEEMNTVVNNT----- 55 Query: 61 SGRPQAASLQQQSGLPPAQQPRRPALLSSPPAQARPAREGAPLLDQPGSERSQARAEAAP 120 PL+ E + RAE+AP Sbjct: 56 -----------------------------------------PLIRAHDGEPNTQRAESAP 74 Query: 121 AADARVWRSRTRDSGNAQRRAAAPAGAPQGQEQEQDRPRSALPEFDGKDYDEILSEVMSE 180 W S + + + A + + + + +P + + V+ E Sbjct: 75 ------WLSLLKQNSDEPNHPLEATNA-----KAESKASNTMP-------SKQMLWVLKE 116 Query: 181 IRSMRGVLETQLAEISWGGTQKREPLKGIVLKEMLAAGFSASLSRLITENLPANSKSQDI 240 +RSMR V+E+QLA I+W Q+REP+K VL +L A FS +LSR + E LPAN S Sbjct: 117 MRSMRNVIESQLATIAWSNIQQREPIKAEVLGTLLGASFSPALSRYLAEKLPANLDSDKA 176 Query: 241 MFWVKSVLARNLNTLANENELLENGGVFAMVGPTGVGKTTTTAKLAARCVMRHGSGKLAL 300 WVK +L++NLNT+ NE E+L+ GGVFA++GPTGVGKTTTTAKLAAR VM+HG+ L L Sbjct: 177 QAWVKYILSKNLNTVENEAEILDQGGVFALIGPTGVGKTTTTAKLAARYVMKHGTQNLGL 236 Query: 301 ITTDGYRIGGYEQLRIYGKILGVMVHSVKDETDLRIALEELKGKHTVLIDTAGVGQRDQM 360 ITTD YR+GG+EQLRIYGKILGV+VH+VKDE DL +AL ELK KHT+LIDT GV QRD+M Sbjct: 237 ITTDAYRVGGHEQLRIYGKILGVIVHAVKDEADLALALNELKHKHTILIDTVGVSQRDRM 296 Query: 361 VAEQDAMLTGAGVDIKRLLCLNATATGGTLNEVVHAYSSSGLAGCIITKLDEAATIGNVL 420 V EQ A+L+ IK+LLCL+AT TG TL +V+ AY GL GCIITKLDEAATIGN L Sbjct: 297 VTEQIALLSAGNTPIKKLLCLSATNTGETLTDVISAYKGKGLDGCIITKLDEAATIGNTL 356 Query: 421 DVVIRHKLNLHYVANGQRVPEDLHVANKLYLADRAFKQKR-ETAPFEFQEGELPGVIG 477 DV+IR KL L+Y A GQRVPED+++A+K L A K PFEF ELP ++G Sbjct: 357 DVIIREKLKLYYTATGQRVPEDINLADKKTLIALALNSKSPANRPFEFLVNELPFIMG 414