BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0005.p (170 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IR33.1 D8IR33_HERSS DNA polymerase III (Subunits tau and gamma... 332 1e-89 A6T0H3.1 A6T0H3_JANMA DNA polymerase III gamma and tau subunit E... 317 3e-85 A4G3Y8.1 A4G3Y8_HERAR DNA polymerase III subunit tau EC=2.7.7.7 316 6e-85 C6BGC0.1 C6BGC0_RALP1 DNA polymerase III, subunits gamma and tau... 303 4e-81 B2U9S5.1 B2U9S5_RALPJ DNA polymerase III, subunits gamma and tau... 303 7e-81 E2T2T2.1 E2T2T2_9RALS DNA polymerase III 302 1e-80 Q1LLG8.1 Q1LLG8_RALME DNA polymerase III tau/gamma subunit EC=2.... 302 1e-80 F1VWQ2.1 F1VWQ2_9BURK DNA polymerase III subunits gamma and tau ... 302 1e-80 D8N404.1 D8N404_RALSO DNA polymerase III subunits gamma and tau ... 301 2e-80 D8NKC1.1 D8NKC1_RALSO DNA polymerase III subunits gamma and tau ... 301 2e-80 >D8IR33.1 D8IR33_HERSS DNA polymerase III (Subunits tau and gamma) protein EC=2.7.7.7 Length = 712 Score = 332 bits (850), Expect = 1e-89, Method: Compositional matrix adjust. Identities = 155/157 (98%), Positives = 155/157 (98%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCVGPDGTGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP 120 SLNCVGPDG GGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP Sbjct: 61 SLNCVGPDGAGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKL 157 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIK Sbjct: 121 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKF 157 >A6T0H3.1 A6T0H3_JANMA DNA polymerase III gamma and tau subunit EC=2.7.7.7 Length = 673 Score = 317 bits (813), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 146/157 (92%), Positives = 152/157 (96%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARKYRP+SFDTLVGQEHVVRALTHAL+ QRLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKYRPKSFDTLVGQEHVVRALTHALDNQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCVGPDGTGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP 120 S NCVGPDG GGIT+ PCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQA+YAP Sbjct: 61 SFNCVGPDGNGGITSTPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKL 157 SNARFKVYMIDEVHMLTNHAFN+MLKTLEEPPEH+K Sbjct: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKF 157 >A4G3Y8.1 A4G3Y8_HERAR DNA polymerase III subunit tau EC=2.7.7.7 Length = 682 Score = 316 bits (810), Expect = 6e-85, Method: Compositional matrix adjust. Identities = 145/157 (92%), Positives = 151/157 (96%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARKYRP+SFDTLVGQEHVVRALTHALE +RLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKYRPKSFDTLVGQEHVVRALTHALENKRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCVGPDGTGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP 120 S NC+GPDG G ITA PCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQA+YAP Sbjct: 61 SFNCIGPDGNGDITATPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAVYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKL 157 SNARFKVYMIDEVHMLTNHAFN+MLKTLEEPPEH+K Sbjct: 121 SNARFKVYMIDEVHMLTNHAFNSMLKTLEEPPEHVKF 157 >C6BGC0.1 C6BGC0_RALP1 DNA polymerase III, subunits gamma and tau EC=2.7.7.7 Length = 733 Score = 303 bits (777), Expect = 4e-81, Method: Compositional matrix adjust. Identities = 140/157 (89%), Positives = 147/157 (93%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARK+RPR F TLVGQEHVV+ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCVGPDGTGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP 120 SLNCVG DG GGITA PCGVC AC IDAGRFVDYIEMDAASNRGVDEMAQLL++AIYAP Sbjct: 61 SLNCVGADGQGGITAQPCGVCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDRAIYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKL 157 ++ RFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH+K Sbjct: 121 TSGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 157 >B2U9S5.1 B2U9S5_RALPJ DNA polymerase III, subunits gamma and tau EC=2.7.7.7 Length = 731 Score = 303 bits (775), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 139/157 (88%), Positives = 147/157 (93%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARK+RPR F TLVGQEHVV+ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCVGPDGTGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP 120 SLNCVG DG GGITA PCGVC AC IDAGRFVDYIEMDAASNRGVDEMAQLL++A+YAP Sbjct: 61 SLNCVGADGQGGITAQPCGVCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDRAVYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKL 157 ++ RFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH+K Sbjct: 121 TSGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 157 >E2T2T2.1 E2T2T2_9RALS DNA polymerase III Length = 731 Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 139/157 (88%), Positives = 147/157 (93%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARK+RPR F TLVGQEHVV+ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCVGPDGTGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP 120 SLNCVG DG GGI+A PCGVC AC IDAGRFVDYIEMDAASNRGVDEMAQLL++AIYAP Sbjct: 61 SLNCVGADGQGGISAQPCGVCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDRAIYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKL 157 ++ RFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH+K Sbjct: 121 TSGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 157 >Q1LLG8.1 Q1LLG8_RALME DNA polymerase III tau/gamma subunit EC=2.7.7.7 Length = 795 Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 138/157 (87%), Positives = 146/157 (92%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARK+RPR F TLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKWRPRDFTTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCVGPDGTGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP 120 +LNC GPDG GGITA PCG C+AC ID+GRFVDYIEMDAASNRGVDEMAQLL++AIYAP Sbjct: 61 ALNCTGPDGNGGITAQPCGQCKACTEIDSGRFVDYIEMDAASNRGVDEMAQLLDKAIYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKL 157 + RFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH+K Sbjct: 121 TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 157 >F1VWQ2.1 F1VWQ2_9BURK DNA polymerase III subunits gamma and tau (Fragment) Length = 287 Score = 302 bits (773), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 140/157 (89%), Positives = 148/157 (94%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARKYRPRSFDTLVGQEHVVRAL+HAL+ RLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 8 MSYQVLARKYRPRSFDTLVGQEHVVRALSHALDTGRLHHAYLFTGTRGVGKTTLSRILAK 67 Query: 61 SLNCVGPDGTGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP 120 + NC+G DG GGITA PCGVC AC AIDAGRFVDYIE+DAASNRGV+EMAQLLEQA+YAP Sbjct: 68 AFNCIGIDGNGGITATPCGVCAACSAIDAGRFVDYIELDAASNRGVEEMAQLLEQAVYAP 127 Query: 121 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKL 157 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH+K Sbjct: 128 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 164 >D8N404.1 D8N404_RALSO DNA polymerase III subunits gamma and tau EC=2.7.7.7 Length = 763 Score = 301 bits (771), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 138/157 (87%), Positives = 146/157 (92%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARK+RPR F TLVGQEHVV+ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 32 MSYQVLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 91 Query: 61 SLNCVGPDGTGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP 120 SLNC+G DG GGITA PCGVC AC IDAGRFVDYIEMDAASNRGVDEMAQLL++A+YAP Sbjct: 92 SLNCIGTDGQGGITAQPCGVCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDRAVYAP 151 Query: 121 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKL 157 + RFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH+K Sbjct: 152 TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 188 >D8NKC1.1 D8NKC1_RALSO DNA polymerase III subunits gamma and tau EC=2.7.7.7 Length = 735 Score = 301 bits (770), Expect = 2e-80, Method: Compositional matrix adjust. Identities = 138/157 (87%), Positives = 146/157 (92%) Query: 1 MSYQVLARKYRPRSFDTLVGQEHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 MSYQVLARK+RPR F TLVGQEHVV+ALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK Sbjct: 1 MSYQVLARKWRPRDFTTLVGQEHVVKALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAK 60 Query: 61 SLNCVGPDGTGGITAAPCGVCEACVAIDAGRFVDYIEMDAASNRGVDEMAQLLEQAIYAP 120 SLNC+G DG GGITA PCGVC AC IDAGRFVDYIEMDAASNRGVDEMAQLL++A+YAP Sbjct: 61 SLNCIGTDGQGGITAQPCGVCRACTEIDAGRFVDYIEMDAASNRGVDEMAQLLDRAVYAP 120 Query: 121 SNARFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHIKL 157 + RFKVYMIDEVHMLTNHAFNAMLKTLEEPPEH+K Sbjct: 121 TAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKF 157