BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0029.p (380 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J0R1.1 D8J0R1_HERSS Sigma-54 dependent transcription regulator... 767 0.0 E6UX41.1 E6UX41_VARPD Sigma54 specific transcriptional regulator... 519 e-145 A1TKJ1.1 A1TKJ1_ACIAC Sigma54 specific transcriptional regulator... 506 e-141 D5NN52.1 D5NN52_9BURK Sigma54 specific transcriptional regulator... 503 e-140 F0Q8T6.1 F0Q8T6_ACIAP Sigma54 specific transcriptional regulator... 503 e-140 Q39LA6.1 Q39LA6_BURS3 Sigma54 specific transcriptional regulator... 468 e-130 D7DP43.1 D7DP43_METS0 Sigma54 specific transcriptional regulator... 466 e-129 C5AN64.1 C5AN64_BURGB Sigma54 specific transcriptional regulator... 464 e-128 B5WJD0.1 B5WJD0_9BURK Putative sigma54 specific transcriptional ... 463 e-128 F0GKH2.1 F0GKH2_9BURK Sigma-54 dependent transcriptional regulat... 461 e-127 >D8J0R1.1 D8J0R1_HERSS Sigma-54 dependent transcription regulator protein Length = 380 Score = 767 bits (1980), Expect = 0.0, Method: Compositional matrix adjust. Identities = 380/380 (100%), Positives = 380/380 (100%) Query: 1 MHASHRSAHLYALPSSPEGHGDLAARASPPLLTLPHARKLGTSIRATAQVFHDPVSLALL 60 MHASHRSAHLYALPSSPEGHGDLAARASPPLLTLPHARKLGTSIRATAQVFHDPVSLALL Sbjct: 1 MHASHRSAHLYALPSSPEGHGDLAARASPPLLTLPHARKLGTSIRATAQVFHDPVSLALL 60 Query: 61 ERVQRVAPSDANVVIIGATGTGKELIARHVHELSQRRDAPFVAVNCGAFSESLAESELFG 120 ERVQRVAPSDANVVIIGATGTGKELIARHVHELSQRRDAPFVAVNCGAFSESLAESELFG Sbjct: 61 ERVQRVAPSDANVVIIGATGTGKELIARHVHELSQRRDAPFVAVNCGAFSESLAESELFG 120 Query: 121 HEKGAFTGAITHKPGWFEAANGGTLFLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIP 180 HEKGAFTGAITHKPGWFEAANGGTLFLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIP Sbjct: 121 HEKGAFTGAITHKPGWFEAANGGTLFLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIP 180 Query: 181 IDVRIIAATNVRLQDAVAAGHFRQDLYYRLQVVQLAIPRLRERPLDILPLAYHFLHEYRQ 240 IDVRIIAATNVRLQDAVAAGHFRQDLYYRLQVVQLAIPRLRERPLDILPLAYHFLHEYRQ Sbjct: 181 IDVRIIAATNVRLQDAVAAGHFRQDLYYRLQVVQLAIPRLRERPLDILPLAYHFLHEYRQ 240 Query: 241 RLGYGAARIDGEGERKLRQHDWPGNIRELENAIHHALLICQDDCLRAEHFHLSHVERRLD 300 RLGYGAARIDGEGERKLRQHDWPGNIRELENAIHHALLICQDDCLRAEHFHLSHVERRLD Sbjct: 241 RLGYGAARIDGEGERKLRQHDWPGNIRELENAIHHALLICQDDCLRAEHFHLSHVERRLD 300 Query: 301 YAVAAADERGNDPLHALEQALQGLFNQSQEGLFEKIEDTVFRTAFEFCERNQVQAARLLD 360 YAVAAADERGNDPLHALEQALQGLFNQSQEGLFEKIEDTVFRTAFEFCERNQVQAARLLD Sbjct: 301 YAVAAADERGNDPLHALEQALQGLFNQSQEGLFEKIEDTVFRTAFEFCERNQVQAARLLD 360 Query: 361 ISRNVLRARLIRNGQISALK 380 ISRNVLRARLIRNGQISALK Sbjct: 361 ISRNVLRARLIRNGQISALK 380 >E6UX41.1 E6UX41_VARPD Sigma54 specific transcriptional regulator, Fis family Length = 378 Score = 519 bits (1336), Expect = e-145, Method: Compositional matrix adjust. Identities = 263/372 (70%), Positives = 297/372 (79%) Query: 9 HLYALPSSPEGHGDLAARASPPLLTLPHARKLGTSIRATAQVFHDPVSLALLERVQRVAP 68 H LPS +P LLT P+ RKL TSIRATAQVF DP S ALLER++ VAP Sbjct: 7 HFDVLPSVDASSAADEDWDAPTLLTFPNPRKLTTSIRATAQVFQDPRSAALLERIRMVAP 66 Query: 69 SDANVVIIGATGTGKELIARHVHELSQRRDAPFVAVNCGAFSESLAESELFGHEKGAFTG 128 SDANV+IIG TGTGKELIARHVH+LS+R PFVAVNCGAFSESL ESELFGHEKG+FTG Sbjct: 67 SDANVLIIGETGTGKELIARHVHDLSRRSGKPFVAVNCGAFSESLVESELFGHEKGSFTG 126 Query: 129 AITHKPGWFEAANGGTLFLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIPIDVRIIAA 188 A + K GWFEAANGGTLFLDEIGDLPL+IQVKLLRVLQEREVVRLGSR+S+PIDVR++AA Sbjct: 127 AFSAKTGWFEAANGGTLFLDEIGDLPLSIQVKLLRVLQEREVVRLGSRKSVPIDVRVVAA 186 Query: 189 TNVRLQDAVAAGHFRQDLYYRLQVVQLAIPRLRERPLDILPLAYHFLHEYRQRLGYGAAR 248 TNVRLQDAVAAGHFR+DL+YRL VV LA+P LRERP DILPLA HF+ EYRQRLGYGA R Sbjct: 187 TNVRLQDAVAAGHFREDLFYRLHVVHLALPTLRERPGDILPLARHFIEEYRQRLGYGAVR 246 Query: 249 IDGEGERKLRQHDWPGNIRELENAIHHALLICQDDCLRAEHFHLSHVERRLDYAVAAADE 308 +D E+KL +H WPGNIRELEN IHHALLICQ D L AEH HLS + + A + A Sbjct: 247 LDAGAEQKLSEHGWPGNIRELENVIHHALLICQHDVLGAEHLHLSSLNIQRRPAESEAAA 306 Query: 309 RGNDPLHALEQALQGLFNQSQEGLFEKIEDTVFRTAFEFCERNQVQAARLLDISRNVLRA 368 P ALE L+ LFN+ + +FE IEDTV RTAFEFC RNQVQAARLL ISRN+LR+ Sbjct: 307 AHATPQQALETVLRELFNEPHDQMFELIEDTVMRTAFEFCHRNQVQAARLLGISRNILRS 366 Query: 369 RLIRNGQISALK 380 RLI++ +I+ALK Sbjct: 367 RLIKSREITALK 378 >A1TKJ1.1 A1TKJ1_ACIAC Sigma54 specific transcriptional regulator, Fis family Length = 373 Score = 506 bits (1302), Expect = e-141, Method: Compositional matrix adjust. Identities = 265/374 (70%), Positives = 299/374 (79%), Gaps = 7/374 (1%) Query: 10 LYALPSSPEGHGDLAAR--ASPPLLTLPHARKLGTSIRATAQVFHDPVSLALLERVQRVA 67 ++ L + PE GD AR + PLLTLP AR + TSIRATAQVF DP SLALLER++ VA Sbjct: 4 VHFLKAFPE-DGDAPARHRYAAPLLTLPGARAMPTSIRATAQVFEDPRSLALLERIRLVA 62 Query: 68 PSDANVVIIGATGTGKELIARHVHELSQRRDAPFVAVNCGAFSESLAESELFGHEKGAFT 127 PSDANV+I+G TGTGKELIARHVH LS RR PFVAVNCGA SE+L ESELFGHEKGAFT Sbjct: 63 PSDANVLILGETGTGKELIARHVHALSARRSGPFVAVNCGALSETLVESELFGHEKGAFT 122 Query: 128 GAITHKPGWFEAANGGTLFLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIPIDVRIIA 187 GA T K GWFEAA+GGTLFLDE+GDLPL+IQVKLLRVLQEREVVRLG+RRS+P+DVR++A Sbjct: 123 GAFTAKAGWFEAAHGGTLFLDEVGDLPLSIQVKLLRVLQEREVVRLGARRSLPVDVRVVA 182 Query: 188 ATNVRLQDAVAAGHFRQDLYYRLQVVQLAIPRLRERPLDILPLAYHFLHEYRQRLGYGAA 247 ATNVRLQDAVAAG+FRQDL+YRL VV LA+P LRERP DILPLA HF+ EYR RLGYG Sbjct: 183 ATNVRLQDAVAAGNFRQDLFYRLHVVNLALPTLRERPGDILPLARHFIDEYRHRLGYGPV 242 Query: 248 RIDGEGERKLRQHDWPGNIRELENAIHHALLICQDDCLRAEHFHLSHVE-RRLDYAVAAA 306 R+D ERKL HDWPGNIRELEN IHH LL+C+ L AE LS + RR + A A Sbjct: 243 RLDAGAERKLLAHDWPGNIRELENVIHHGLLVCRRGVLLAEDLQLSSLGLRRRSGSDAPA 302 Query: 307 DERGNDPLHALEQALQGLFNQSQEGLFEKIEDTVFRTAFEFCERNQVQAARLLDISRNVL 366 D PL ALE AL GLF Q + L+E+IE+TV R AFEFC RNQVQAARLL ISRNVL Sbjct: 303 DA---TPLQALETALSGLFQQQGDQLYERIEETVVRAAFEFCHRNQVQAARLLGISRNVL 359 Query: 367 RARLIRNGQISALK 380 RARLIR+G I+AL+ Sbjct: 360 RARLIRHGDITALR 373 >D5NN52.1 D5NN52_9BURK Sigma54 specific transcriptional regulator, Fis family Length = 385 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 252/357 (70%), Positives = 285/357 (79%), Gaps = 9/357 (2%) Query: 28 SPPLLTLPHARKLGTSIRATAQVFHDPVSLALLERVQRVAPSDANVVIIGATGTGKELIA 87 +PPLLT+P R L TSIRATAQVF DP SLALLER++ VAPSDANV++IG TGTGKEL+A Sbjct: 34 APPLLTMPDKRALTTSIRATAQVFSDPQSLALLERIRMVAPSDANVLVIGETGTGKELVA 93 Query: 88 RHVHELSQRRDAPFVAVNCGAFSESLAESELFGHEKGAFTGAITHKPGWFEAANGGTLFL 147 RHVH LS R+D PFVAVNCGAFSESL ESELFGHEKGAFTGA KPGWFEAANGGTLFL Sbjct: 94 RHVHNLSARKDGPFVAVNCGAFSESLVESELFGHEKGAFTGAFCAKPGWFEAANGGTLFL 153 Query: 148 DEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIPIDVRIIAATNVRLQDAVAAGHFRQDLY 207 DEIGDLPL++QVKLLRVLQERE+VRLGSRRSIPIDVR++AATNV LQDAVAAGHFR+DL+ Sbjct: 154 DEIGDLPLSMQVKLLRVLQEREIVRLGSRRSIPIDVRVLAATNVHLQDAVAAGHFREDLF 213 Query: 208 YRLQVVQLAIPRLRERPLDILPLAYHFLHEYRQRLGYGAARIDGEGERKLRQHDWPGNIR 267 YRL VV LA+P LR+RP DILPLA +F+ EYR RLGYG I+ ERKL H WPGNIR Sbjct: 214 YRLNVVHLAVPTLRDRPGDILPLARYFIEEYRNRLGYGPVGIEPRAERKLLAHSWPGNIR 273 Query: 268 ELENAIHHALLICQDDCLRAEHFHLS----HVERRLDYAVAAADERGNDPLHALEQALQG 323 ELEN IH+ALL+C+ D L +S H RR A++ PL LE+AL+ Sbjct: 274 ELENVIHYALLVCRSDSLGEGDLQISSFGTHAPRR-----TASEPVSTTPLEGLEEALRH 328 Query: 324 LFNQSQEGLFEKIEDTVFRTAFEFCERNQVQAARLLDISRNVLRARLIRNGQISALK 380 LF ++ LFE+IEDTV R AF+FC RNQ+QAARLL ISRNVLRARLIR QISA K Sbjct: 329 LFGNAEGNLFEQIEDTVMRVAFDFCYRNQIQAARLLGISRNVLRARLIRAKQISAQK 385 >F0Q8T6.1 F0Q8T6_ACIAP Sigma54 specific transcriptional regulator, Fis family Length = 373 Score = 503 bits (1295), Expect = e-140, Method: Compositional matrix adjust. Identities = 257/355 (72%), Positives = 289/355 (81%), Gaps = 2/355 (0%) Query: 26 RASPPLLTLPHARKLGTSIRATAQVFHDPVSLALLERVQRVAPSDANVVIIGATGTGKEL 85 R + PLLTLP AR + TSIRATAQVF DP SLALLER++ VAPS+ANV+I+G TGTGKEL Sbjct: 21 REAAPLLTLPGARAMPTSIRATAQVFEDPRSLALLERIRLVAPSEANVLILGETGTGKEL 80 Query: 86 IARHVHELSQRRDAPFVAVNCGAFSESLAESELFGHEKGAFTGAITHKPGWFEAANGGTL 145 IARHVH LS RR+ PFVAVNCGA SE+L ESELFGHEKGAFTGA T K GWFEAANGGTL Sbjct: 81 IARHVHALSARREGPFVAVNCGALSETLVESELFGHEKGAFTGAFTAKAGWFEAANGGTL 140 Query: 146 FLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIPIDVRIIAATNVRLQDAVAAGHFRQD 205 FLDE+GDLPL+IQVKLLRVLQEREVVRLG+RRS+P+DVR++AATNVRLQDAVAAG+FR+D Sbjct: 141 FLDEVGDLPLSIQVKLLRVLQEREVVRLGARRSLPVDVRVVAATNVRLQDAVAAGNFRED 200 Query: 206 LYYRLQVVQLAIPRLRERPLDILPLAYHFLHEYRQRLGYGAARIDGEGERKLRQHDWPGN 265 L+YRL VV LA+P LRERP DILPLA HF+ EYR RLGYG R+DG ERKL HDWPGN Sbjct: 201 LFYRLHVVGLALPTLRERPGDILPLARHFIDEYRHRLGYGPVRLDGGAERKLLAHDWPGN 260 Query: 266 IRELENAIHHALLICQDDCLRAEHFHLSHVERRLDYAVAAADERGNDPLHALEQALQGLF 325 IRELEN IHH LLIC+ L AE LS + + A A E PL ALE AL LF Sbjct: 261 IRELENVIHHGLLICRRGVLLAEDLQLSSLGLQRRPAGEAQAE--ATPLQALETALSDLF 318 Query: 326 NQSQEGLFEKIEDTVFRTAFEFCERNQVQAARLLDISRNVLRARLIRNGQISALK 380 Q E L+E+IE+TV R AFEFC RNQVQAARLL ISRNVLRARLIR+G I+A++ Sbjct: 319 QQQGEQLYERIEETVVRAAFEFCHRNQVQAARLLGISRNVLRARLIRHGDITAVR 373 >Q39LA6.1 Q39LA6_BURS3 Sigma54 specific transcriptional regulator, Fis family Length = 366 Score = 468 bits (1205), Expect = e-130, Method: Compositional matrix adjust. Identities = 239/357 (66%), Positives = 275/357 (77%), Gaps = 10/357 (2%) Query: 30 PLLTLPHARKLGTSIRATAQVFHDPVSLALLERVQRVAPSDANVVIIGATGTGKELIARH 89 P+LTLP L TSIRA AQVF DP S+ALLER++ VAPSDANV+I+G TGTGKELIARH Sbjct: 14 PVLTLPDRSALATSIRARAQVFVDPRSVALLERIRLVAPSDANVLIVGETGTGKELIARH 73 Query: 90 VHELSQRRDAPFVAVNCGAFSESLAESELFGHEKGAFTGAITHKPGWFEAANGGTLFLDE 149 VH LS+R PF+AVNCGAFSE+L ESELFGHEKGAFTGA + KPGWFEAANGGTLFLDE Sbjct: 74 VHGLSRRNGGPFIAVNCGAFSETLVESELFGHEKGAFTGAFSAKPGWFEAANGGTLFLDE 133 Query: 150 IGDLPLAIQVKLLRVLQEREVVRLGSRRSIPIDVRIIAATNVRLQDAVAAGHFRQDLYYR 209 IGDLPL++QVKLLRVLQEREVVRLGSR +PIDVR++AATNV LQ AVA G FR DL+YR Sbjct: 134 IGDLPLSMQVKLLRVLQEREVVRLGSRTGVPIDVRVVAATNVDLQQAVANGQFRGDLFYR 193 Query: 210 LQVVQLAIPRLRERPLDILPLAYHFLHEYRQRLGYGAARIDGEGERKLRQHDWPGNIREL 269 L VVQLA+P LRERP DILPLA HF +YR RLGYG ID ER+L H WPGNIREL Sbjct: 194 LNVVQLAVPTLRERPGDILPLARHFFDDYRSRLGYGPRSIDPRAERRLEAHGWPGNIREL 253 Query: 270 ENAIHHALLICQDDCLRAEHFHLSHVERRLDYAVAAADERGNDP------LHALEQALQG 323 EN IHHALL+ ++D L+ H++ AA + +P ALE+AL+ Sbjct: 254 ENVIHHALLVSRNDSLQEADLHIASP----GVPTAALNTSAPEPDPAAGAQAALERALRD 309 Query: 324 LFNQSQEGLFEKIEDTVFRTAFEFCERNQVQAARLLDISRNVLRARLIRNGQISALK 380 LF++ LFE+IEDTV R AFEF RNQ+QAARLL ISRNVLRARLIR +I+A+K Sbjct: 310 LFDEDHGNLFERIEDTVMRVAFEFSHRNQIQAARLLGISRNVLRARLIRAKEIAAMK 366 >D7DP43.1 D7DP43_METS0 Sigma54 specific transcriptional regulator, Fis family Length = 376 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 223/350 (63%), Positives = 281/350 (80%), Gaps = 1/350 (0%) Query: 31 LLTLPHARKLGTSIRATAQVFHDPVSLALLERVQRVAPSDANVVIIGATGTGKELIARHV 90 LLTLP+++ L SIRATAQVF DP S ALL RVQ++APS+ANV+IIG TGTGKELIARHV Sbjct: 28 LLTLPNSQALTKSIRATAQVFEDPKSKALLARVQQIAPSEANVLIIGETGTGKELIARHV 87 Query: 91 HELSQRRDAPFVAVNCGAFSESLAESELFGHEKGAFTGAITHKPGWFEAANGGTLFLDEI 150 H+LSQR++ PF+AVNCGAFSESL ESELFG EKGAFTGA+ K GWFEAANGGTLFLDEI Sbjct: 88 HQLSQRKNGPFIAVNCGAFSESLVESELFGQEKGAFTGALVAKSGWFEAANGGTLFLDEI 147 Query: 151 GDLPLAIQVKLLRVLQEREVVRLGSRRSIPIDVRIIAATNVRLQDAVAAGHFRQDLYYRL 210 GDLPL+ QVKLLRVLQEREVVRLGSR+ PIDVR++AATNVRL++AVAAGHFR+DL+YRL Sbjct: 148 GDLPLSSQVKLLRVLQEREVVRLGSRKPTPIDVRLVAATNVRLEEAVAAGHFREDLFYRL 207 Query: 211 QVVQLAIPRLRERPLDILPLAYHFLHEYRQRLGYGAARIDGEGERKLRQHDWPGNIRELE 270 +V + +P LR RP DI+PLA +F+ EYR+RLGY RID G++KL QH+WPGNIRELE Sbjct: 208 RVAHIELPTLRNRPGDIIPLAEYFVGEYRRRLGYAEIRIDESGKQKLLQHNWPGNIRELE 267 Query: 271 NAIHHALLICQDDCLRAEHFHLSHVERRLDYAVAAADERGNDPLHALEQALQGLFNQSQE 330 N IHHALLIC+++ +++E LS ++ A + N+ ++LE +L +F + + Sbjct: 268 NIIHHALLICKNNIVKSEDLQLSTIQLHRPKENNATYQAANES-NSLETSLHQIFEEGGD 326 Query: 331 GLFEKIEDTVFRTAFEFCERNQVQAARLLDISRNVLRARLIRNGQISALK 380 ++E +ED + +TA+ +C NQVQ A+LL ISRN++RA+LIR G I AL+ Sbjct: 327 TIYENLEDVIIKTAYHYCHNNQVQTAKLLGISRNIVRAKLIRMGAIKALR 376 >C5AN64.1 C5AN64_BURGB Sigma54 specific transcriptional regulator with PAS sensor, Fis family protein Length = 371 Score = 464 bits (1194), Expect = e-128, Method: Compositional matrix adjust. Identities = 237/351 (67%), Positives = 273/351 (77%) Query: 30 PLLTLPHARKLGTSIRATAQVFHDPVSLALLERVQRVAPSDANVVIIGATGTGKELIARH 89 P+L LP+ R+ TSIR QVF DP SL LL+RV+RVAPSDAN++I+G TGTGKELIARH Sbjct: 21 PVLRLPNRRQFTTSIRRRTQVFVDPSSLQLLDRVRRVAPSDANILIVGETGTGKELIARH 80 Query: 90 VHELSQRRDAPFVAVNCGAFSESLAESELFGHEKGAFTGAITHKPGWFEAANGGTLFLDE 149 VH LSQR D PFVAVNCGAFSE+L ESELFGHEKGAFTGA KPGWFEAANGGTLFLDE Sbjct: 81 VHALSQRSDQPFVAVNCGAFSETLVESELFGHEKGAFTGAFGAKPGWFEAANGGTLFLDE 140 Query: 150 IGDLPLAIQVKLLRVLQEREVVRLGSRRSIPIDVRIIAATNVRLQDAVAAGHFRQDLYYR 209 IGDLPL++QVKLLRVLQERE+VRLG+R SIPIDVRI+AATNV L DAVAAGHFR+DL+YR Sbjct: 141 IGDLPLSVQVKLLRVLQEREIVRLGARSSIPIDVRIVAATNVHLPDAVAAGHFREDLFYR 200 Query: 210 LQVVQLAIPRLRERPLDILPLAYHFLHEYRQRLGYGAARIDGEGERKLRQHDWPGNIREL 269 L VVQ+AIP LR+RP DILPLA +F+ +Y RLGY ID E +L H WPGNIREL Sbjct: 201 LNVVQVAIPSLRDRPGDILPLARYFVDDYCARLGYEPRGIDTSAEHRLLAHSWPGNIREL 260 Query: 270 ENAIHHALLICQDDCLRAEHFHLSHVERRLDYAVAAADERGNDPLHALEQALQGLFNQSQ 329 EN IHHALL+ + L A+ H++ A A + + ALE AL+ LF+ + Sbjct: 261 ENVIHHALLVSHREILAADDLHIAPACSVPARAFAPVGDAQHTVQQALETALRSLFDDKR 320 Query: 330 EGLFEKIEDTVFRTAFEFCERNQVQAARLLDISRNVLRARLIRNGQISALK 380 + LFE IEDTV R AFEFC RNQ+QAARLL ISRNVLRARLIR +I+A K Sbjct: 321 DRLFEHIEDTVMRIAFEFCHRNQIQAARLLGISRNVLRARLIRAREIAAQK 371 >B5WJD0.1 B5WJD0_9BURK Putative sigma54 specific transcriptional regulator Length = 375 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 239/358 (66%), Positives = 279/358 (77%), Gaps = 2/358 (0%) Query: 24 AARASPPLLTLPHARKLGTSIRATAQVFHDPVSLALLERVQRVAPSDANVVIIGATGTGK 83 +A A P + +LP+ R L TSIR AQVF DP SLALLERVQ VAPSDAN++I G TGTGK Sbjct: 19 SAGALPHVYSLPNPRGLSTSIRGRAQVFVDPRSLALLERVQMVAPSDANILISGETGTGK 78 Query: 84 ELIARHVHELSQRRDAPFVAVNCGAFSESLAESELFGHEKGAFTGAITHKPGWFEAANGG 143 ELIARHVH LSQR+D PFVAVNCGAFSE+L ESELFGHEKGAFTGA + KPGWFEAANGG Sbjct: 79 ELIARHVHALSQRKDKPFVAVNCGAFSETLVESELFGHEKGAFTGAFSAKPGWFEAANGG 138 Query: 144 TLFLDEIGDLPLAIQVKLLRVLQEREVVRLGSRRSIPIDVRIIAATNVRLQDAVAAGHFR 203 TLFLDEIGDLPL++QVKLLRVLQEREVVRLGSR+S+PIDVR++AATNV+L AVAAGHFR Sbjct: 139 TLFLDEIGDLPLSMQVKLLRVLQEREVVRLGSRQSLPIDVRVLAATNVQLPQAVAAGHFR 198 Query: 204 QDLYYRLQVVQLAIPRLRERPLDILPLAYHFLHEYRQRLGYGAARIDGEGERKLRQHDWP 263 DLYYRL VVQL +P+L ERP DILPLA +F+ +YR RLGYG I + ER+L H WP Sbjct: 199 GDLYYRLNVVQLDVPKLCERPGDILPLARYFIDDYRSRLGYGPREIAPQAERRLLAHRWP 258 Query: 264 GNIRELENAIHHALLICQDDCLRAEHFHL-SHVERRLDYAVAAADERGNDPLHALEQALQ 322 GNIRELEN IHHALL+ + D L+ L + +DY + + D ALE AL+ Sbjct: 259 GNIRELENVIHHALLVGRHDTLQESDVQLAAFAAPAIDY-LPRPEALPQDAQQALETALR 317 Query: 323 GLFNQSQEGLFEKIEDTVFRTAFEFCERNQVQAARLLDISRNVLRARLIRNGQISALK 380 + +E LFE IE+TV + A+E+ RNQ+QAARLL ISRNVLRARLIR +I+ALK Sbjct: 318 DMLETEREHLFEDIENTVIKVAYEYSHRNQIQAARLLGISRNVLRARLIRAKEIAALK 375 >F0GKH2.1 F0GKH2_9BURK Sigma-54 dependent transcriptional regulator (Fragment) Length = 339 Score = 461 bits (1186), Expect = e-127, Method: Compositional matrix adjust. Identities = 241/339 (71%), Positives = 269/339 (79%) Query: 42 TSIRATAQVFHDPVSLALLERVQRVAPSDANVVIIGATGTGKELIARHVHELSQRRDAPF 101 TSIRA AQVF DP SLALLER++ VAPSDANV+I+G TGTGKELIARHVH LSQR++ PF Sbjct: 1 TSIRARAQVFVDPRSLALLERIRLVAPSDANVLIVGETGTGKELIARHVHSLSQRQNRPF 60 Query: 102 VAVNCGAFSESLAESELFGHEKGAFTGAITHKPGWFEAANGGTLFLDEIGDLPLAIQVKL 161 VAVNCGAFSE+L ESELFGHEKGAFTGA + KPGWFEAANGG LFLDEIGDLPL++QVKL Sbjct: 61 VAVNCGAFSETLVESELFGHEKGAFTGAFSAKPGWFEAANGGLLFLDEIGDLPLSMQVKL 120 Query: 162 LRVLQEREVVRLGSRRSIPIDVRIIAATNVRLQDAVAAGHFRQDLYYRLQVVQLAIPRLR 221 LRVLQEREVVRLGSR IPIDVR++AATNV LQ AVAAGHFR DL+YRL VVQLA+P LR Sbjct: 121 LRVLQEREVVRLGSRTGIPIDVRVVAATNVDLQHAVAAGHFRGDLFYRLNVVQLAVPTLR 180 Query: 222 ERPLDILPLAYHFLHEYRQRLGYGAARIDGEGERKLRQHDWPGNIRELENAIHHALLICQ 281 ERP DILPLA +F +YR RLGYG ID ERKL H WPGNIRELEN IHHALL+ + Sbjct: 181 ERPGDILPLARYFFDDYRGRLGYGPRSIDPRAERKLEAHGWPGNIRELENVIHHALLVSR 240 Query: 282 DDCLRAEHFHLSHVERRLDYAVAAADERGNDPLHALEQALQGLFNQSQEGLFEKIEDTVF 341 + L+ HLS A A A E ALE+AL+ LF++ L+E+IEDTV Sbjct: 241 HESLQDTDLHLSSSGLPAANAAAIAPEPPAGAQAALERALRELFDEDHGNLYERIEDTVM 300 Query: 342 RTAFEFCERNQVQAARLLDISRNVLRARLIRNGQISALK 380 R AFEF RNQ+QAARLL ISRNVLRARLIR QI+ALK Sbjct: 301 RVAFEFSHRNQIQAARLLGISRNVLRARLIRAKQIAALK 339