BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0012.0026.p (426 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IQD2.1 D8IQD2_HERSS Lipid A core-O-antigen ligase protein 670 0.0 D8IQD7.1 D8IQD7_HERSS Lipid A core-O-antigen ligase protein 265 1e-68 F0Q3K5.1 F0Q3K5_ACIAP O-antigen polymerase 181 2e-43 F2K181.1 F2K181_9GAMM O-antigen polymerase 179 8e-43 A9BR10.1 A9BR10_DELAS O-antigen polymerase 176 9e-42 C6AQE6.1 C6AQE6_AGGAN RfaL protein 175 1e-41 D8DBV3.1 D8DBV3_COMTE O-antigen polymerase 171 1e-40 A1WKR6.1 A1WKR6_VEREI O-antigen polymerase 171 2e-40 A1W2G4.1 A1W2G4_ACISJ O-antigen polymerase 169 7e-40 E8TTX7.1 E8TTX7_ALIDB O-antigen polymerase 168 1e-39 >D8IQD2.1 D8IQD2_HERSS Lipid A core-O-antigen ligase protein Length = 426 Score = 670 bits (1728), Expect = 0.0, Method: Compositional matrix adjust. Identities = 387/426 (90%), Positives = 403/426 (94%) Query: 1 MHYNAHFAAQAGHAPLPSMPFYSSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGK 60 MHYNAHFAAQAGHAPLPSMPFYSSLAVFLLVALSLVVPSGFSLGSLML+LGAAVLLRKGK Sbjct: 1 MHYNAHFAAQAGHAPLPSMPFYSSLAVFLLVALSLVVPSGFSLGSLMLMLGAAVLLRKGK 60 Query: 61 PRAILYREDWLIMLALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRP 120 PRAILYREDWLIMLALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRP Sbjct: 61 PRAILYREDWLIMLALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRP 120 Query: 121 GALWTGAAIGAVGAGLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILATCGLARAIRL 180 GALWTGAAIGAVGAGLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILA CGLARAIRL Sbjct: 121 GALWTGAAIGAVGAGLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILAACGLARAIRL 180 Query: 181 QQPLRWKLMHAAGLILGLTASILSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVLQMSAGS 240 QQPLRWKLMHAAGLILGLTASILSGSRGSWLA PVCA LAAWLLLRAGY+RLVLQ+ AGS Sbjct: 181 QQPLRWKLMHAAGLILGLTASILSGSRGSWLALPVCATLAAWLLLRAGYARLVLQLGAGS 240 Query: 241 LTMLFCLALLPQSPLSARIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAG 300 L ML CLALLPQSPLSAR+RLA+ +TN YVQRADADSSVG RLEMWRIG+ LAPQHLL G Sbjct: 241 LAMLVCLALLPQSPLSARLRLALAETNDYVQRADADSSVGTRLEMWRIGMQLAPQHLLVG 300 Query: 301 WGKQGMMQAKHELVRQGLASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQ 360 WGKQGM+ AKHE+V QG ASPSVDEHTHLHNEYLDALVKRG+PGLAA+LVLYLLPLWLF Sbjct: 301 WGKQGMIDAKHEMVSQGQASPSVDEHTHLHNEYLDALVKRGIPGLAALLVLYLLPLWLFH 360 Query: 361 RRQRLVTGSEARLAAIAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWAMSQEQPV 420 R++RL G EARLAA AGVM+VLSYL FGLTQAFLTHNNGVMLYAFLCSILWA+ QEQ V Sbjct: 361 RQRRLAAGYEARLAASAGVMMVLSYLAFGLTQAFLTHNNGVMLYAFLCSILWALCQEQAV 420 Query: 421 SPSNTA 426 P+NTA Sbjct: 421 HPANTA 426 >D8IQD7.1 D8IQD7_HERSS Lipid A core-O-antigen ligase protein Length = 402 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 167/397 (42%), Positives = 243/397 (61%), Gaps = 4/397 (1%) Query: 19 MPFYSSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILYREDWLIMLALLS 78 M ++S +VFL A+SL+VPSGFS+GS++L LG+ L+ K R L RED LI+ LL+ Sbjct: 1 MGSFTSFSVFLFSAISLIVPSGFSVGSVLLALGSLTLVNK-SVRTTLNREDRLILAVLLA 59 Query: 79 YFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGAGLLS 138 YF V + L+H G+EYD PLRF LA ALLLLRAYPP P A W+G +G +GAG+ + Sbjct: 60 YFAVTVAMLLLHHESGKEYDLPLRFFLAAAALLLLRAYPPAPAAFWSGLILGGIGAGVFA 119 Query: 139 LWQWLADGAARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHAAGLILGL 198 WQ+ A R G TN IQYG+I+ ++ IL G+ A++ + W + G ++GL Sbjct: 120 GWQYFAHNV-RATGYTNAIQYGDISFIIGILCLTGITWAMQQRAARAWVALLIVGGVMGL 178 Query: 199 TASILSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVL-QMSAGSLTMLFCLALLPQSPLSA 257 S+ +GSRGSW+A P+C ++ R+ +R V ++A + ++P + A Sbjct: 179 MGSLFTGSRGSWVALPICLLILCVYYSRSIPARYVWGSLAALVAAIAIVFTVMPSTDFRA 238 Query: 258 RIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHELVRQG 317 RI LA + + Y+Q+ DADSS+G R+EMWR G + + G GK G +Q + + G Sbjct: 239 RISLAFSEASTYMQKKDADSSIGTRMEMWRAGAMAVAEAPVLGMGKAGFVQWETGQIEAG 298 Query: 318 LASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQRRQRLVTGSEARLAAIA 377 + + + H++NE+LDALVKRGVPGL +L LY +PL LF R + +A+ A+ Sbjct: 299 KINALMSGNNHVYNEWLDALVKRGVPGLLVLLALYFVPLRLFIARLKSAP-EQAKPYALG 357 Query: 378 GVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWAM 414 GV+L+++Y+ FG +Q FL HN+GVM F ILW M Sbjct: 358 GVLLIVNYIGFGFSQVFLAHNSGVMTLGFTMVILWGM 394 >F0Q3K5.1 F0Q3K5_ACIAP O-antigen polymerase Length = 433 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 150/425 (35%), Positives = 216/425 (50%), Gaps = 25/425 (5%) Query: 5 AHFAAQAGHAPLPSMPFYSSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAI 64 A F++ G P P ++LA FL+ AL+L +PSG+S G+++L+LGA PR + Sbjct: 4 AAFSSLLGPGPWPRR--LTTLAAFLVPALALTLPSGYSYGAVLLLLGALAT----LPRWV 57 Query: 65 LYREDWLIMLALLSYFFVNAGLNLVHQAPGR---EYDAPLRFLLAIPALLLLRAYPPRPG 121 R D LAL++ F L V P ++D P++F+L L + + PPRP Sbjct: 58 RVRPD-RGTLALVAVTFAMGLLWCVMSDPRETMGQWDRPIKFMLGAVCGLFIASQPPRPR 116 Query: 122 ALWTGAAIGAVGAGLLSLWQWLADGAAR----PGGSTNPIQYGNIAALLAILATCGLARA 177 L+ G +G +GAGL++LWQ GA R P G TN IQ+GN+A LL + L Sbjct: 117 PLFWGLLVGCIGAGLVALWQVHVQGALRASGFPTGRTNAIQWGNLALLLGSMLALQLIVL 176 Query: 178 IRLQQPLRWKLMHAAGLILGLTASILSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVLQMS 237 R Q P + + L S+LS SRG WLA + + WLL R R+ ++ Sbjct: 177 WR-QLPRVVAWLAVVAALGALNGSVLSQSRGGWLALLLALPVGLWLLHRLHPGRIT-AIT 234 Query: 238 AGSLTMLFCLALLPQSPLSARIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHL 297 A +T L L + + R + Y +AD+SVG RLE WR ++ + Sbjct: 235 AVLVTALAVLTAMNWGVMEKRWERMQEEVTQYDTHGEADNSVGQRLEHWRFAWNVGMERP 294 Query: 298 LAGWGKQGMMQAKHELVRQGLASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLW 357 GWG G MQ K V PS+ E+ ++HNE LD VK G+ G+ +L Y +PL Sbjct: 295 WTGWGMAGYMQEKAARVAAKQYEPSILEYIYVHNEPLDVFVKTGIGGVVLLLCFYGVPLA 354 Query: 358 LF--QRRQRLVTGSE-----ARLAA--IAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLC 408 LF RR+ SE A++ A ++GV + L Y FGLTQ F HN+G+M Y F+ Sbjct: 355 LFWPSRRRMAAVASEPEPVRAQVLALRLSGVCIPLLYAGFGLTQVFFAHNSGIMFYIFMN 414 Query: 409 SILWA 413 ++WA Sbjct: 415 MVIWA 419 >F2K181.1 F2K181_9GAMM O-antigen polymerase Length = 408 Score = 179 bits (454), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 127/390 (32%), Positives = 201/390 (51%), Gaps = 7/390 (1%) Query: 29 LLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILYREDWLIMLALLSYFFVNAGLNL 88 L +ALSLVV +G+S+GS +L L + ++ R L R+D L+ YF + Sbjct: 14 LCLALSLVVSNGYSVGSAILFLISPLIFVF--SRFNLSRQDKLLAAVFALYFVLMIVFIY 71 Query: 89 VHQAPGREYDAPLRFLLAIPAL-LLLRAYPPRPGALWTGAAIGAVGAGLLSLWQWLADGA 147 + RE D P RFLL +P L L+L Y PR ALW G+ +GA GA ++++++ Sbjct: 72 LDGWHYRELDRPSRFLLVLPVLYLMLYCYGPRI-ALWVGSMLGAYGAVVVAVYERFVLDL 130 Query: 148 ARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHAAGLILGLTASILSGSR 207 R G +PI +G+ + LL +L+ +Q L L A G+ S+LS SR Sbjct: 131 PRASGGEHPIMFGDTSMLLGVLSAMATLYFFSKRQFLYVGL-AALAFFSGVMGSLLSASR 189 Query: 208 GSWLAFPVCAVLAAWLLLRAGYSRLVLQMSAGSLTMLFCLALLPQSPLSARIRLAVVQTN 267 G W+ P+ V W +LV+ + + + +P+ +S RI A Sbjct: 190 GGWVGLPLIMVFLLWQSRDLLGKKLVIGICLLGVMGAVTICNIPKLGVSNRIYEAAHNIE 249 Query: 268 GYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHELVRQGLASPSVDEHT 327 Y+Q D+++SVG R EMW+ +++ + G G+ + K +L +G+ + E Sbjct: 250 MYLQ-GDSNTSVGLRFEMWKASVYMLADSPIFGVGEYSSKEFKQKLSDEGVITQITVEFD 308 Query: 328 HLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQRRQRLVTGS-EARLAAIAGVMLVLSYL 386 H HNEYLDAL RG+ G A++ +YL+PL LF + R + + AI G ++ +SY+ Sbjct: 309 HAHNEYLDALGLRGLVGFLALMAVYLVPLRLFLAKMREHQDNWNIKAYAIGGALIPMSYM 368 Query: 387 TFGLTQAFLTHNNGVMLYAFLCSILWAMSQ 416 F LTQ+ +HN GVM+Y F + WA ++ Sbjct: 369 DFALTQSMFSHNIGVMMYVFPIAFFWAATR 398 >A9BR10.1 A9BR10_DELAS O-antigen polymerase Length = 422 Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 141/412 (34%), Positives = 220/412 (53%), Gaps = 36/412 (8%) Query: 23 SSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILYRED---WLIM-----L 74 ++LA L+ L+L + SG+S G+ ++VLGA L PR + YR+ WL++ + Sbjct: 13 TTLAAILVPGLALWLRSGYSYGAGLMVLGALCFL----PRWVRYRQSNGTWLLVALFLGM 68 Query: 75 ALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGA 134 A++ YF L+++ G ++D P++F+L +LL YPP G +G+ GA Sbjct: 69 AVMWYF-----LSVLDGGTG-QFDRPVKFILGAVSLLFAMCYPPTARIFLWGIPLGSAGA 122 Query: 135 GLLSLWQWLADGAARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHAAGL 194 G ++LWQ G R G TN IQ+GN+A LL +C A + Q+ L W+L+ A Sbjct: 123 GFMALWQVCVLGMERATGYTNAIQWGNMALLLGCF-SCIYAVSFWHQRSLLWRLLVLAAA 181 Query: 195 ILGLTASILSGSRGSWLA----FPVCAVLAAWLLLRAGY-SRLVLQMSAGSLTMLFCLAL 249 LG AS+LSGSRG WLA F + VL + R Y RL+L +A + + +A Sbjct: 182 ALGALASLLSGSRGGWLALLPMFFMLMVLVR--MYRPQYFGRLLLGCAAIVVALATVMAF 239 Query: 250 LPQSPLSARIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQA 309 +P+ +S R+ + + Y+ ++++S+G RLE +R+ + + + L GWG QG + Sbjct: 240 IPR--VSERVDEVYLDVSTYLYAGNSNTSLGTRLEQYRLAVQMIGEKPLLGWGMQGYVDE 297 Query: 310 KHELVRQGLASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLF---QRRQRLV 366 H V G S+ E+ +HN++LD VK GVPG+ L++ LWLF +RR L Sbjct: 298 MHRRVAAGSYGQSIREYNFIHNDFLDIWVKLGVPGVLLQAALFISLLWLFWPSRRRMALW 357 Query: 367 TGS-----EARLAAIAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWA 413 EA L I G ++ YL FG++Q F HN+G++ + FL LW Sbjct: 358 PADSTPWREALLLRILGSLMPAMYLAFGMSQQFFVHNSGIVFFVFLVVALWT 409 >C6AQE6.1 C6AQE6_AGGAN RfaL protein Length = 419 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 125/405 (30%), Positives = 207/405 (51%), Gaps = 8/405 (1%) Query: 18 SMPFYSSLAVFLLVALSLVVPSGFSLGSLMLV---LGAAVLLRKGKPRAILYREDWLIML 74 SM ++ F L L+ + +G+++ +L+ LG ++ K R L +ED +++ Sbjct: 10 SMIVNFTIGFFFLFLLN--IKNGYNIAPALLIVLGLGYSIYGVIKKWRWSLSKEDKMLIY 67 Query: 75 ALLSYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGA 134 + L YF ++HQ RE D P R LL IP LLLL PPR + +GA+ A Sbjct: 68 SYLFYFATFVLSFIIHQGKIRELDNPSRVLLFIPVLLLLLHIPPRLNTVLYAIPLGAIIA 127 Query: 135 GLLSLWQWLADGAARPGG-STNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHAAG 193 G+ +++ L + IQ G+IA L + + + Q + L AG Sbjct: 128 GITAIYDKLVLHSEMAFSVRIMHIQGGDIAMSLGMFSVAIGFYFFQKTQLKQTTLCTFAG 187 Query: 194 LILGLTASILSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVLQMSAGSLTMLFCLALLPQS 253 L G+ SILS +RG W+ P +L W+ + R L + + + F + LP + Sbjct: 188 L-CGILGSILSTARGGWIGVPFILILILWVYRQHLSKRFFLGLFSILIIAGFGINQLPNN 246 Query: 254 PLSARIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHEL 313 ++ R+ A N Y+QR D +SVG R +MW+ L +A + GWG QG+ + + + Sbjct: 247 RIAERVAAAEYDINAYLQRNDGSTSVGTRFDMWKSALLMAQEKPWLGWGVQGVSEKRKQQ 306 Query: 314 VRQGLASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQRRQRLVTGSEARL 373 QGL S H HN+Y D L KRG+ GL A++ ++ +P +LF R + +E +L Sbjct: 307 FEQGLISQFASGFNHAHNQYFDDLSKRGIVGLLALIGVFFVPFYLFWRNLK-SPHAEMKL 365 Query: 374 AAIAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWAMSQEQ 418 A + GV+ +LS + +G++Q F +HN+G + Y FL + +A +++Q Sbjct: 366 AGLLGVVHILSVMFYGMSQGFFSHNSGNIFYFFLVIVFYAFTKQQ 410 >D8DBV3.1 D8DBV3_COMTE O-antigen polymerase Length = 432 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 154/421 (36%), Positives = 209/421 (49%), Gaps = 36/421 (8%) Query: 27 VFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILYREDWLIMLALLSYFFVNAGL 86 F ALSL VPSG+S GS L L +P+ + RE +++ LL + L Sbjct: 26 CFAFFALSLCVPSGYSYGSTALALLTLAGCIAARPQGLARRET-FVLVGLLLVLGLLWSL 84 Query: 87 NLVH--QAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGAGLLSLWQWLA 144 + H A G Y A ++ LA L L R A+ G A+G+VGA ++ +Q Sbjct: 85 SFDHWFSAAGWGYGA--KYALAALCLWYLSKTGLRLTAIVWGLALGSVGALAIAAYQAGV 142 Query: 145 DGAARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHAAGLIL----GLTA 200 R G TN IQYG IA + AT LA R W A L L G+ A Sbjct: 143 LKMPRVSGFTNAIQYGGIAMYMG-FATLSLALLGR------WSKSQTAALGLMAACGIYA 195 Query: 201 SILSGSRGSWLAFP--VCAV-LAAWLLLRAGYSRLVLQMSAGSLTMLFCLALLPQSP-LS 256 S LS SRGSW+ P + A+ L AWL GY RL M+AG++ +L + +P P L Sbjct: 196 SFLSDSRGSWVVIPLLIAAIWLMAWL---NGYKRLA-SMTAGAMLLLGLIVAVPAYPKLE 251 Query: 257 ARIRLAVVQTNGYVQ--RADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHELV 314 R A + + Y+Q + A +SVG RLE WR+ +HL Q +GWG G AK ++V Sbjct: 252 QRSAEAAREVSQYLQDPQKYAVTSVGQRLEQWRLAIHLIEQRPFSGWGLAGYPAAKQQMV 311 Query: 315 RQGLASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPLWLFQRRQRLVTGSEA--- 371 QGLA PSV E+ H HNE LD VKRG+PGL +L Y +P +F QR + ++A Sbjct: 312 DQGLAHPSVMEYGHAHNEILDMWVKRGLPGLILLLAFYAVPAAIFWPTQRRLAHADAAQR 371 Query: 372 ---RLAAIAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWA----MSQEQPVSPSN 424 A +L L+Y FG TQ F HN+G M Y F ++LW M + V+ + Sbjct: 372 SKLLALRAAATLLPLAYFGFGWTQVFFAHNSGNMFYIFSLAVLWGGICRMETQSAVTKTQ 431 Query: 425 T 425 + Sbjct: 432 S 432 >A1WKR6.1 A1WKR6_VEREI O-antigen polymerase Length = 415 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 150/409 (36%), Positives = 209/409 (51%), Gaps = 25/409 (6%) Query: 23 SSLAVFLLVALSLVVPSGFSLGSLMLVLGAAV----LLRKGKPRAILYREDWL-IMLALL 77 ++ F+L L+L +PSG+S G+ +L+L A V R PRA WL ++ A + Sbjct: 11 ANCGAFMLAGLALWLPSGYSYGAALLLLTAVVSAPWWCRSPAPRAAW----WLALVFACM 66 Query: 78 SYFFVNAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGAGLL 137 + ++ L++ D PL++LLA+P + L + P LWTG A+GA G GL+ Sbjct: 67 AVLWM---LDMDATGDWGSMDRPLKYLLALPCIFCLMRFAPHASCLWTGIALGAAGGGLI 123 Query: 138 SLWQWLADGAARPGGSTNPIQYGNIAALLAILATCGLARAIRLQQPL-RWKLMHAAGLIL 196 L+Q G +R G TN IQYG+++ LLA+++ L R QP RW L A L Sbjct: 124 GLYQTQWQGLSRANGFTNAIQYGDLSLLLALMSGLLLLVQYRRWQPWQRWLLALAVLLGG 183 Query: 197 GLTASILSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVLQMSAGSLTMLFCLALLPQSP-L 255 +A LS SRG WLA + ++AWLL R R V G +L + +L Q P + Sbjct: 184 VGSA--LSQSRGGWLALVLVLPVSAWLLARTIGPRRVCW---GLCALLLGVVVLAQMPVV 238 Query: 256 SARIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHELVR 315 R A + Y + D SSVG RL WR+ + + L GWG+ G MQ K V Sbjct: 239 GQRFDQARQEVQTYREMGDDSSSVGQRLAHWRLAWEMGRERPLTGWGRTGYMQEKVRRVA 298 Query: 316 QGLASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLY---LLPLWLFQRRQRLVTG---S 369 GL PSV H+HNE LD VKRG+ G+ +L+ Y L W R R G Sbjct: 299 AGLVRPSVLTFGHVHNEVLDLFVKRGIFGVLLLLLFYGTALALFWPTAARIRDAAGKIDK 358 Query: 370 EARLAAIAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWAMSQEQ 418 EA + GV + LSY+ FG TQ FL HN+G M Y F+C ++ A Q + Sbjct: 359 EALSLCLVGVSMPLSYIGFGFTQVFLAHNSGNMFYLFMCPLVLAALQRR 407 >A1W2G4.1 A1W2G4_ACISJ O-antigen polymerase Length = 435 Score = 169 bits (429), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 138/405 (34%), Positives = 201/405 (49%), Gaps = 19/405 (4%) Query: 23 SSLAVFLLVALSLVVPSGFSLGSLMLVLGAAVLLRKGKPRAILYREDWLIMLALLSYFFV 82 ++ AVFL+ AL+L V SG+S G+ +L++GA L G PR R W A+ + Sbjct: 17 ATAAVFLVPALALTVQSGYSYGAALLLVGALCSLH-GWPRLPQDRWTWAFAAAMSCIGVL 75 Query: 83 NAGLNLVHQAPGREYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGAGLLSLWQW 142 L + G +D P +F I LL + P+P A + G +G GAG+++LWQ Sbjct: 76 WLVLANPLEGLG-GWDRPSKFAFGIVCLLFVSTAAPKPRAQFWGLLVGCAGAGVVALWQV 134 Query: 143 LADGAAR----PGGSTNPIQYGNIAALLA-ILATCGLARAIRLQQPLRWKLMHAAGLILG 197 + + R P G TN IQ+GN+A L+ +LA LA +R R M G +L Sbjct: 135 YVENSPRASGFPTGRTNAIQWGNLALLMGTMLAVQTLA--LREHLSRRAVAMACVGGLLA 192 Query: 198 LTASILSGSRGSWLAFPVCAVLAAWLLLRAGYSRLVLQMSAGSLTMLFCLALLPQSPLSA 257 L AS+LS SRG WLA + + + L Y R + +M AG+ L L L+ Sbjct: 193 LNASVLSQSRGGWLALLMATPVGLYFLWHF-YRRELWRMLAGTTIALVVLGAANHKVLAE 251 Query: 258 RIRLAVVQTNGYVQRADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHELVRQG 317 R + + Y AD+SVG RLE WR + + L GWG +G + K + V G Sbjct: 252 RWNVMEKEVLIYGSERAADTSVGQRLEHWRFAWEVGLEKPLLGWGMRGYLAEKEKRVAAG 311 Query: 318 LASPSVDEHTHLHNEYLDALVKRGVPGLAAMLVLYLLPL---WLFQRRQRLVTGSEARLA 374 PS+ E+ + HNE LD +K G+ G+ +L+ Y +PL W + R G A + Sbjct: 312 QYEPSILEYIYTHNEPLDMFIKAGLVGVLLLLLFYAVPLGMFWPTRARMAAYAGQAAEVR 371 Query: 375 A------IAGVMLVLSYLTFGLTQAFLTHNNGVMLYAFLCSILWA 413 A +AGV + L Y FG+TQ F HN+G+M Y F+ W+ Sbjct: 372 AQVLALRMAGVCIPLLYAGFGMTQVFFAHNSGIMFYLFMVMTTWS 416 >E8TTX7.1 E8TTX7_ALIDB O-antigen polymerase Length = 450 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 131/391 (33%), Positives = 196/391 (50%), Gaps = 16/391 (4%) Query: 36 VVPSGFSLGSLMLVLGAAVLLRKGKPRAILYREDWLIMLALLSYFFVNAGLNLVHQAPGR 95 V SG+S G+ +L++GA LR+ P A R W +A+ L ++ G Sbjct: 31 TVQSGYSYGAALLLIGALCSLRR-WPFAAQDRWTWGFAVAMGGMGVFWWLLANPQESLGG 89 Query: 96 EYDAPLRFLLAIPALLLLRAYPPRPGALWTGAAIGAVGAGLLSLWQWLADGAAR----PG 151 +D P +F L I LL + PRP A + G G +GAG ++LWQ +GA R P Sbjct: 90 TWDRPSKFALGIACLLFVSPTAPRPRAQFWGLLAGCLGAGAVALWQVHVEGAPRASGFPS 149 Query: 152 GSTNPIQYGNIAALLAILATCGLARAIRLQQPLRWKLMHAAGLILGLTASILSGSRGSWL 211 G TN IQ+GN+A LL + A +R + ++ L AS+LS SRG WL Sbjct: 150 GKTNAIQWGNLALLLGTMLAV-QAITLREHLGRAALALAGLAALMALNASVLSLSRGGWL 208 Query: 212 AFPVCAVLAAWLLLRAGYSRLVLQMSAGSLTMLFCLALLPQSPLSARIRLAVVQTNGYVQ 271 A + + + +LL R R + +M G+ +L L + L+ R + + Y Sbjct: 209 ALLLASPVGLYLLWRFD-RRALWRMLGGAAVVLAVLGAANHAVLAERWNVMEKEMLVYDA 267 Query: 272 RADADSSVGARLEMWRIGLHLAPQHLLAGWGKQGMMQAKHELVRQGLASPSVDEHTHLHN 331 +A +SVG RLE WR + + + GWG +G ++ K + V G PS+ E+ + HN Sbjct: 268 EREAGNSVGQRLEHWRFAWEVGLEKPIFGWGMRGYLEEKEKRVAAGQYEPSIVEYIYTHN 327 Query: 332 EYLDALVKRGVPGLAAMLVLYLLPLWLFQ-RRQRLVT----GSEARLAAIA----GVMLV 382 E LD VK G+ G+A +L+ Y +PL +F R R+ G+E R +A GV + Sbjct: 328 EPLDMFVKAGIVGVAWLLLFYAVPLCMFWPTRARVAAYARQGAEVRAQMLALRLGGVCIP 387 Query: 383 LSYLTFGLTQAFLTHNNGVMLYAFLCSILWA 413 L Y FG+TQ F HN+G+M Y F+ + WA Sbjct: 388 LLYAGFGMTQVFFAHNSGIMFYLFMTMLTWA 418