BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0324.p (130 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IUD5.1 D8IUD5_HERSS D-ribose pyranase EC=5.5.1.n1 257 3e-67 F1VVZ4.1 F1VVZ4_9BURK Ribose ABC transport system, high affinity... 182 2e-44 B0KKS4.1 RBSD_PSEPG D-ribose pyranase EC=5.5.1.n1 160 5e-38 D7HZ07.1 D7HZ07_PSESS D-ribose pyranase EC=5.5.1.n1 160 7e-38 Q4ZUH3.1 RBSD_PSEU2 D-ribose pyranase EC=5.5.1.n1 159 2e-37 C3JZP4.1 RBSD_PSEFS D-ribose pyranase EC=5.5.1.n1 157 3e-37 E2MI79.1 E2MI79_PSESM D-ribose pyranase EC=5.5.1.n1 157 3e-37 Q883I5.1 RBSD_PSESM D-ribose pyranase EC=5.5.1.n1 157 3e-37 E2XV12.1 E2XV12_PSEFL D-ribose pyranase EC=5.5.1.n1 157 4e-37 E7PPE0.1 E7PPE0_PSESG D-ribose pyranase 157 4e-37 >D8IUD5.1 D8IUD5_HERSS D-ribose pyranase EC=5.5.1.n1 Length = 130 Score = 257 bits (657), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 128/130 (98%), Positives = 130/130 (100%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVP+IDLAVTRGVPGFLTVLETVLS Sbjct: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPVIDLAVTRGVPGFLTVLETVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHENFKEQTRRARAVIRTGECTPYA 120 ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHE+FKEQTRRARAVIRTGECTPYA Sbjct: 61 ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHESFKEQTRRARAVIRTGECTPYA 120 Query: 121 NIILGSGVVF 130 NIILGSGVVF Sbjct: 121 NIILGSGVVF 130 >F1VVZ4.1 F1VVZ4_9BURK Ribose ABC transport system, high affinity permease RbsD Length = 130 Score = 182 bits (461), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 84/130 (64%), Positives = 107/130 (82%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+SQ+IA++GHGD +VIGD GLPVPPGVPLIDLA+TRG+PG L L +L+ Sbjct: 1 MKKTPLLNIALSQLIASLGHGDAIVIGDAGLPVPPGVPLIDLALTRGIPGLLDTLRAILT 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITALELAGKRSVSHENFKEQTRRARAVIRTGECTPYA 120 E+QVE HV+A ELA SP +A+ I AL+L G+ ++SH +FK+ TR ARA++RTGECTPYA Sbjct: 61 EMQVEQHVLASELALHSPAMASAIAALDLPGRLTMSHADFKQTTRSARAIVRTGECTPYA 120 Query: 121 NIILGSGVVF 130 NI+L +GV F Sbjct: 121 NIVLVAGVAF 130 >B0KKS4.1 RBSD_PSEPG D-ribose pyranase EC=5.5.1.n1 Length = 132 Score = 160 bits (405), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 83/132 (62%), Positives = 99/132 (75%), Gaps = 2/132 (1%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA MGHGD LVIGD GLPVPPGV +IDLAVT G+P F +VL VLS Sbjct: 1 MKKTPLLNVALSRVIAGMGHGDILVIGDAGLPVPPGVEMIDLAVTPGLPDFASVLRAVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL--ELAGKRSVSHENFKEQTRRARAVIRTGECTP 118 ELQVE HV+A+E+ +V P +I L +L + +SHENFK +R ARAV+RTGEC P Sbjct: 61 ELQVERHVLAEEMQKVVPPALVEIERLKGKLGKREWLSHENFKVLSRSARAVVRTGECQP 120 Query: 119 YANIILGSGVVF 130 Y+NI L SGV F Sbjct: 121 YSNIALISGVTF 132 >D7HZ07.1 D7HZ07_PSESS D-ribose pyranase EC=5.5.1.n1 Length = 134 Score = 160 bits (404), Expect = 7e-38, Method: Compositional matrix adjust. Identities = 79/134 (58%), Positives = 104/134 (77%), Gaps = 4/134 (2%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA++GHGD L+I D G+PVP GV LIDLA+TRGVP F++VL+ VLS Sbjct: 1 MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPAGVELIDLALTRGVPDFVSVLDVVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL----ELAGKRSVSHENFKEQTRRARAVIRTGEC 116 E+QVE HV+A+E+A+V P I +L +L +R +SHE+ K +R+ARA+IRTGEC Sbjct: 61 EMQVESHVLANEMAEVKPPALQVIESLNLDDQLGQQRWISHEDLKVLSRKARAIIRTGEC 120 Query: 117 TPYANIILGSGVVF 130 PY+N+ L SGVVF Sbjct: 121 QPYSNVALVSGVVF 134 >Q4ZUH3.1 RBSD_PSEU2 D-ribose pyranase EC=5.5.1.n1 Length = 134 Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 78/134 (58%), Positives = 104/134 (77%), Gaps = 4/134 (2%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA++GHGD L+I D G+PVP GV LIDLA+TRGVP F++VL+ VLS Sbjct: 1 MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPAGVELIDLALTRGVPDFISVLDVVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL----ELAGKRSVSHENFKEQTRRARAVIRTGEC 116 E+QVE HV+A+E+A+V P I +L +L +R +SHE+ K +R+A+A+IRTGEC Sbjct: 61 EMQVESHVLANEMAEVKPPALQVIESLNLEDQLGQQRWISHEDLKVLSRKAKAIIRTGEC 120 Query: 117 TPYANIILGSGVVF 130 PY+N+ L SGVVF Sbjct: 121 QPYSNVALVSGVVF 134 >C3JZP4.1 RBSD_PSEFS D-ribose pyranase EC=5.5.1.n1 Length = 134 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 79/134 (58%), Positives = 99/134 (73%), Gaps = 4/134 (2%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA++GHGD LVIGD GLPVPPGV LIDLA+T+G+P F++ L VLS Sbjct: 1 MKKTPLLNIALSRVIASLGHGDILVIGDAGLPVPPGVELIDLALTQGIPDFISALRIVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITALE----LAGKRSVSHENFKEQTRRARAVIRTGEC 116 E+QVE HV+A+E+ P ++ L L +R VSHE FK+ +R+ARAV+RTGEC Sbjct: 61 EMQVESHVLAEEILLKQPPALNELNTLSDEAALGERRLVSHEAFKQLSRKARAVVRTGEC 120 Query: 117 TPYANIILGSGVVF 130 PY NI L SGV F Sbjct: 121 QPYCNIALVSGVTF 134 >E2MI79.1 E2MI79_PSESM D-ribose pyranase EC=5.5.1.n1 Length = 134 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/134 (58%), Positives = 102/134 (76%), Gaps = 4/134 (2%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA++GHGD L+I D G+PVPPGV LIDLA+TRGVP F++VL+ VLS Sbjct: 1 MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPPGVELIDLALTRGVPDFVSVLDVVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL----ELAGKRSVSHENFKEQTRRARAVIRTGEC 116 E+QVE HV+A E+A + P I +L +L +R +SHE+ K +R A+A+IRTGEC Sbjct: 61 EMQVESHVLAREMADIKPPALQIIESLNLDDQLGQQRWISHEDLKALSRTAKAIIRTGEC 120 Query: 117 TPYANIILGSGVVF 130 PY+N+ L SGVVF Sbjct: 121 QPYSNLALVSGVVF 134 >Q883I5.1 RBSD_PSESM D-ribose pyranase EC=5.5.1.n1 Length = 134 Score = 157 bits (398), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 78/134 (58%), Positives = 102/134 (76%), Gaps = 4/134 (2%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA++GHGD L+I D G+PVPPGV LIDLA+TRGVP F++VL+ VLS Sbjct: 1 MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPPGVELIDLALTRGVPDFVSVLDVVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL----ELAGKRSVSHENFKEQTRRARAVIRTGEC 116 E+QVE HV+A E+A + P I +L +L +R +SHE+ K +R A+A+IRTGEC Sbjct: 61 EMQVESHVLAREMADIKPPALQIIESLNLDDQLGQQRWISHEDLKALSRTAKAIIRTGEC 120 Query: 117 TPYANIILGSGVVF 130 PY+N+ L SGVVF Sbjct: 121 QPYSNLALVSGVVF 134 >E2XV12.1 E2XV12_PSEFL D-ribose pyranase EC=5.5.1.n1 Length = 134 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 79/134 (58%), Positives = 99/134 (73%), Gaps = 4/134 (2%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA++GHGD LVIGD GLPVPPGV LIDLA+T+G+P F+ L VLS Sbjct: 1 MKKTPLLNIALSRVIASLGHGDILVIGDAGLPVPPGVELIDLALTQGIPDFIGTLRVVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL----ELAGKRSVSHENFKEQTRRARAVIRTGEC 116 E+QVE HV+A+E+ P A++ L L +R VSH+ FK+ +R+ARAV+RTGEC Sbjct: 61 EMQVESHVLAEEILHKQPPALAELNTLTDQAALGERRLVSHDAFKQLSRKARAVVRTGEC 120 Query: 117 TPYANIILGSGVVF 130 PY NI L SGV F Sbjct: 121 QPYCNIALVSGVTF 134 >E7PPE0.1 E7PPE0_PSESG D-ribose pyranase Length = 134 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 77/134 (57%), Positives = 104/134 (77%), Gaps = 4/134 (2%) Query: 1 MKKTALLNAAISQVIATMGHGDTLVIGDVGLPVPPGVPLIDLAVTRGVPGFLTVLETVLS 60 MKKT LLN A+S+VIA++GHGD L+I D G+PVP GV LIDLA+TRGVP F++VL+ VLS Sbjct: 1 MKKTPLLNIALSRVIASLGHGDILMIVDAGMPVPAGVELIDLALTRGVPDFVSVLDVVLS 60 Query: 61 ELQVEFHVVADELAQVSPMLAAQITAL----ELAGKRSVSHENFKEQTRRARAVIRTGEC 116 E+QVE HV+++E+A+V P I +L +L +R +SHE+ K +R+A+A+IRTGEC Sbjct: 61 EMQVESHVLSNEMAEVKPPALQVIESLNLDDQLGQQRWISHEDLKVLSRKAKAIIRTGEC 120 Query: 117 TPYANIILGSGVVF 130 PY+N+ L SGVVF Sbjct: 121 QPYSNVALVSGVVF 134