BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0242.p (142 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZC0.1 D8IZC0_HERSS Probable rRNA maturation factor 289 9e-77 F1W2D4.1 F1W2D4_9BURK A heat shock protein involved in translati... 203 6e-51 A6SV22.1 RRMF_JANMA Probable rRNA maturation factor 201 2e-50 C3X485.1 C3X485_OXAFO Probable rRNA maturation factor 183 7e-45 E5AL31.1 E5AL31_BURRH Probable rRNA maturation factor 174 4e-42 D8NYD4.1 D8NYD4_RALSO Putative metalloprotease EC=3.4.24.- 173 8e-42 A4G265.1 RRMF_HERAR Probable rRNA maturation factor 173 9e-42 C3X850.1 C3X850_OXAFO Probable rRNA maturation factor 172 1e-41 C6BCL6.1 C6BCL6_RALP1 Putative uncharacterized protein 171 3e-41 B2UFP1.1 B2UFP1_RALPJ Putative uncharacterized protein 170 5e-41 >D8IZC0.1 D8IZC0_HERSS Probable rRNA maturation factor Length = 151 Score = 289 bits (740), Expect = 9e-77, Method: Compositional matrix adjust. Identities = 142/142 (100%), Positives = 142/142 (100%) Query: 1 VQYADERLKKTITTTLLRRWVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYATNVLTF 60 VQYADERLKKTITTTLLRRWVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYATNVLTF Sbjct: 10 VQYADERLKKTITTTLLRRWVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYATNVLTF 69 Query: 61 AYTEDEDSEVTEADIIFCTDVLEKEAAEQKKSVEEHTAHLVVHGVLHAQGYDHEDDEEAD 120 AYTEDEDSEVTEADIIFCTDVLEKEAAEQKKSVEEHTAHLVVHGVLHAQGYDHEDDEEAD Sbjct: 70 AYTEDEDSEVTEADIIFCTDVLEKEAAEQKKSVEEHTAHLVVHGVLHAQGYDHEDDEEAD 129 Query: 121 EMEALETEILAGLGYANPYAAR 142 EMEALETEILAGLGYANPYAAR Sbjct: 130 EMEALETEILAGLGYANPYAAR 151 >F1W2D4.1 F1W2D4_9BURK A heat shock protein involved in translation, putative protease Length = 154 Score = 203 bits (517), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 97/142 (68%), Positives = 112/142 (78%), Gaps = 3/142 (2%) Query: 1 VQYADERLKKTITTTLLRRWVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYATNVLTF 60 VQY D RL +T L+RRWVQAALFAPA+LT+RFV S+EGR LNRDYR KDYATNVLTF Sbjct: 11 VQYPDPRLATLVTRPLVRRWVQAALFAPAELTVRFVDSDEGRTLNRDYRSKDYATNVLTF 70 Query: 61 AYT---EDEDSEVTEADIIFCTDVLEKEAAEQKKSVEEHTAHLVVHGVLHAQGYDHEDDE 117 AY ED + ++T AD+I CTDVL+ EA Q K + H AHLVVHGV+HAQGYDHED+ Sbjct: 71 AYNDGEEDPNDDITRADLILCTDVLQAEALAQGKPLLAHAAHLVVHGVMHAQGYDHEDEV 130 Query: 118 EADEMEALETEILAGLGYANPY 139 EADEMEALE E+LA LG+ NPY Sbjct: 131 EADEMEALEIEVLAKLGFGNPY 152 >A6SV22.1 RRMF_JANMA Probable rRNA maturation factor Length = 152 Score = 201 bits (512), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 109/139 (78%), Positives = 121/139 (87%) Query: 1 VQYADERLKKTITTTLLRRWVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYATNVLTF 60 VQY D+RL+ IT LR WV+AAL APAQ+TLRFV + EG+DLNR+YRGKDYATNVLTF Sbjct: 11 VQYPDKRLQDIITRPKLRSWVKAALLAPAQITLRFVDAAEGKDLNRNYRGKDYATNVLTF 70 Query: 61 AYTEDEDSEVTEADIIFCTDVLEKEAAEQKKSVEEHTAHLVVHGVLHAQGYDHEDDEEAD 120 AYTEDEDSE T+ADII CTDVL+ EAAEQ+KSVEEH AHLVVHGVLHAQGYDHE DEEA+ Sbjct: 71 AYTEDEDSETTQADIILCTDVLQLEAAEQEKSVEEHAAHLVVHGVLHAQGYDHESDEEAE 130 Query: 121 EMEALETEILAGLGYANPY 139 EMEALE EILA LG+ NPY Sbjct: 131 EMEALEIEILADLGFRNPY 149 >C3X485.1 C3X485_OXAFO Probable rRNA maturation factor Length = 176 Score = 183 bits (465), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 94/165 (56%), Positives = 107/165 (64%), Gaps = 26/165 (15%) Query: 1 VQYADERLKKTITTTLLRRWVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYATNVLTF 60 VQY D R K +T LRRWVQA+L PA +TLRFV +EEGR LNRDYRGKDYATNVLTF Sbjct: 11 VQYPDPRFKDILTRQKLRRWVQASLQMPADITLRFVDAEEGRALNRDYRGKDYATNVLTF 70 Query: 61 AYTEDE--------------------------DSEVTEADIIFCTDVLEKEAAEQKKSVE 94 Y + E ++ ADI+ CTDVLE EA EQ KS++ Sbjct: 71 PYDDMEAFDLSAIGLSGDDPAPLELTSLATSPGAQTARADIVLCTDVLEAEAKEQAKSLD 130 Query: 95 EHTAHLVVHGVLHAQGYDHEDDEEADEMEALETEILAGLGYANPY 139 H AHLVVHGVLHAQGYDH +D EA EME LET+ILA LGY +PY Sbjct: 131 AHAAHLVVHGVLHAQGYDHTNDAEAGEMETLETKILAKLGYPDPY 175 >E5AL31.1 E5AL31_BURRH Probable rRNA maturation factor Length = 157 Score = 174 bits (441), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 82/132 (62%), Positives = 100/132 (75%), Gaps = 1/132 (0%) Query: 9 KKTITTTLLRRWVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYATNVLTFAYTEDEDS 68 K + + WV+AALFAPA+LT+RFV +EGR LNR YRGKDY TNVLTFAY E D+ Sbjct: 24 KALLPRARIAGWVRAALFAPAELTIRFVDEQEGRALNRSYRGKDYPTNVLTFAYGES-DN 82 Query: 69 EVTEADIIFCTDVLEKEAAEQKKSVEEHTAHLVVHGVLHAQGYDHEDDEEADEMEALETE 128 E D++ C V+E EA EQ K ++ H AHL+VHGVLHAQGYDHEDDE+A EME++ET+ Sbjct: 83 EPVSGDLVLCCPVVESEAREQHKPLDAHYAHLIVHGVLHAQGYDHEDDEQAREMESIETD 142 Query: 129 ILAGLGYANPYA 140 ILA LGY +PYA Sbjct: 143 ILARLGYPDPYA 154 >D8NYD4.1 D8NYD4_RALSO Putative metalloprotease EC=3.4.24.- Length = 255 Score = 173 bits (438), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 82/123 (66%), Positives = 95/123 (77%), Gaps = 1/123 (0%) Query: 20 WVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYATNVLTFAYTEDEDSEVTEADIIFCT 79 W+ ALFA AQL +RFVG EEGR LNR YR KDYATNVLTF+Y+E ED V+ ADI+ C Sbjct: 134 WIAPALFADAQLNVRFVGEEEGRTLNRTYRDKDYATNVLTFSYSETEDDPVS-ADIVLCC 192 Query: 80 DVLEKEAAEQKKSVEEHTAHLVVHGVLHAQGYDHEDDEEADEMEALETEILAGLGYANPY 139 V+EKEA +Q K + H AHL+VHG LHAQGYDHED EA EME LETE+LAGLG+ +PY Sbjct: 193 PVVEKEAKDQGKPLRAHYAHLIVHGALHAQGYDHEDPAEAKEMEGLETEVLAGLGFPDPY 252 Query: 140 AAR 142 A R Sbjct: 253 ADR 255 >A4G265.1 RRMF_HERAR Probable rRNA maturation factor Length = 156 Score = 173 bits (438), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 97/144 (67%), Positives = 117/144 (81%), Gaps = 5/144 (3%) Query: 1 VQYADERLKKTITTTLLRRWVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYATNVLTF 60 VQYAD R++ +T LLR+WV+AAL APAQ+TLRFV + EG+ LNR+YRGKDYATNVLTF Sbjct: 10 VQYADTRVQDILTRPLLRKWVKAALLAPAQITLRFVDAAEGQILNRNYRGKDYATNVLTF 69 Query: 61 AYTEDEDSE-----VTEADIIFCTDVLEKEAAEQKKSVEEHTAHLVVHGVLHAQGYDHED 115 Y +D+ S+ VT+ADII CTDVL++EAAEQ K++ H AHLV+HGVLHAQGYDHE Sbjct: 70 TYNDDDGSDIADDAVTQADIILCTDVLQREAAEQNKTLIFHAAHLVIHGVLHAQGYDHES 129 Query: 116 DEEADEMEALETEILAGLGYANPY 139 DEEA+EMEALE E LA LG+ NPY Sbjct: 130 DEEAEEMEALEIEFLAALGFPNPY 153 >C3X850.1 C3X850_OXAFO Probable rRNA maturation factor Length = 166 Score = 172 bits (436), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 98/160 (61%), Positives = 111/160 (69%), Gaps = 21/160 (13%) Query: 1 VQYADERLKKTITTTLLRRWVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYATNVLTF 60 VQY DERLK T+T LRRWVQAAL PA +TLRFV +EEGR LNR+YR KDYATNVLTF Sbjct: 5 VQYPDERLKTTLTRPKLRRWVQAALQMPAVITLRFVDAEEGRTLNREYREKDYATNVLTF 64 Query: 61 AY---------------------TEDEDSEVTEADIIFCTDVLEKEAAEQKKSVEEHTAH 99 Y +D ++ +ADI+ CTDVLEKEA EQ KS+E H AH Sbjct: 65 PYDDMDEFDLTDAVPSRPEPEADRDDIPEQMAQADIVLCTDVLEKEAKEQGKSLEAHAAH 124 Query: 100 LVVHGVLHAQGYDHEDDEEADEMEALETEILAGLGYANPY 139 LVVHG LHAQGYDH +DEEA+EME LE +ILA LG ANPY Sbjct: 125 LVVHGTLHAQGYDHLNDEEAEEMETLEKQILAKLGIANPY 164 >C6BCL6.1 C6BCL6_RALP1 Putative uncharacterized protein Length = 270 Score = 171 bits (433), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 89/147 (60%), Positives = 103/147 (70%), Gaps = 7/147 (4%) Query: 1 VQYADERLKKTITTTL-----LRRWVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYAT 55 VQY DE LK L + W+ ALFA AQL +RFVG EEGR LNR YRGKDYAT Sbjct: 126 VQYGDE-LKAAARKALPKERDIEAWIAPALFADAQLNVRFVGEEEGRTLNRTYRGKDYAT 184 Query: 56 NVLTFAYTEDEDSEVTEADIIFCTDVLEKEAAEQKKSVEEHTAHLVVHGVLHAQGYDHED 115 NVLTF+Y E + V+ ADI+ C V+EKEA EQKK + H AHL+VHG LHAQGYDHED Sbjct: 185 NVLTFSYAESAEDPVS-ADIVLCCAVVEKEAKEQKKPLTAHYAHLIVHGALHAQGYDHED 243 Query: 116 DEEADEMEALETEILAGLGYANPYAAR 142 +A EME +ETEIL LG+A+PYA R Sbjct: 244 AADAKEMEGIETEILRDLGFADPYADR 270 >B2UFP1.1 B2UFP1_RALPJ Putative uncharacterized protein Length = 270 Score = 170 bits (431), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 89/147 (60%), Positives = 103/147 (70%), Gaps = 7/147 (4%) Query: 1 VQYADERLKKTITTTLLRR-----WVQAALFAPAQLTLRFVGSEEGRDLNRDYRGKDYAT 55 VQY DE LK L + W+ ALFA AQL +RFVG EEGR LNR YRGKDYAT Sbjct: 126 VQYGDE-LKAAARKALPKERDIEGWIAPALFADAQLNVRFVGEEEGRTLNRTYRGKDYAT 184 Query: 56 NVLTFAYTEDEDSEVTEADIIFCTDVLEKEAAEQKKSVEEHTAHLVVHGVLHAQGYDHED 115 NVLTF+Y E + V+ ADI+ C V+EKEA EQKK + H AHL+VHG LHAQGYDHED Sbjct: 185 NVLTFSYAESAEDPVS-ADIVLCCTVVEKEAKEQKKPLLAHYAHLIVHGALHAQGYDHED 243 Query: 116 DEEADEMEALETEILAGLGYANPYAAR 142 +A EME +ETEIL LG+A+PYA R Sbjct: 244 AADAKEMEGIETEILRDLGFADPYADR 270