BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0227.p (260 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IZA7.1 D8IZA7_HERSS Ribosomal RNA small subunit methyltransfer... 526 e-147 A6SV13.1 RSMA_JANMA Ribosomal RNA small subunit methyltransferas... 430 e-119 A4G256.1 RSMA_HERAR Ribosomal RNA small subunit methyltransferas... 417 e-115 F1VWL0.1 F1VWL0_9BURK Dimethyladenosine transferase 372 e-101 C3XBE5.1 C3XBE5_OXAFO Ribosomal RNA small subunit methyltransfer... 347 1e-93 C3X570.1 C3X570_OXAFO Ribosomal RNA small subunit methyltransfer... 315 5e-84 Q2YBP5.1 RSMA_NITMU Ribosomal RNA small subunit methyltransferas... 302 4e-80 Q0KEA7.1 RSMA_CUPNH Ribosomal RNA small subunit methyltransferas... 300 1e-79 B2AH89.1 RSMA_CUPTR Ribosomal RNA small subunit methyltransferas... 299 3e-79 Q475Q1.1 RSMA_CUPPJ Ribosomal RNA small subunit methyltransferas... 298 5e-79 >D8IZA7.1 D8IZA7_HERSS Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 260 Score = 526 bits (1354), Expect = e-147, Method: Compositional matrix adjust. Identities = 259/260 (99%), Positives = 260/260 (100%) Query: 1 MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVE 60 MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVE Sbjct: 1 MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVE 60 Query: 61 LDRDLVERLKKRFDAARLTVHSADALKFDFSTIPVPDGRKLRVVGNLPYNISSPLLFHLA 120 LDRDLVERLKKRFDAARLTVHSADALKFDFSTIPVP+GRKLRVVGNLPYNISSPLLFHLA Sbjct: 61 LDRDLVERLKKRFDAARLTVHSADALKFDFSTIPVPEGRKLRVVGNLPYNISSPLLFHLA 120 Query: 121 EIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKV 180 EIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKV Sbjct: 121 EIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKV 180 Query: 181 DSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGIDPQARP 240 DSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGIDPQARP Sbjct: 181 DSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGIDPQARP 240 Query: 241 EAVPMEQFVALANLLAARQH 260 EAVPMEQFVALANLLAARQH Sbjct: 241 EAVPMEQFVALANLLAARQH 260 >A6SV13.1 RSMA_JANMA Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 255 Score = 430 bits (1106), Expect = e-119, Method: Compositional matrix adjust. Identities = 207/255 (81%), Positives = 228/255 (89%) Query: 1 MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVE 60 MKHIPRKRFGQNFLTD+ VL++II +I P D MVEIGPGLAAMT LLLEG++ +HVVE Sbjct: 1 MKHIPRKRFGQNFLTDDTVLYNIIRAIDPQPQDTMVEIGPGLAAMTRLLLEGVQQMHVVE 60 Query: 61 LDRDLVERLKKRFDAARLTVHSADALKFDFSTIPVPDGRKLRVVGNLPYNISSPLLFHLA 120 LDRDLVERLKK FD RL +HSADAL+FDFSTIPVP G KLRVVGNLPYNISSPLLFHLA Sbjct: 61 LDRDLVERLKKSFDPKRLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFHLA 120 Query: 121 EIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKV 180 E+AP VQDQHFMLQKEVVERMVAEPGSK YGRLSVMLQWRYHMEL+FVVPPTAFDPPP+V Sbjct: 121 EMAPHVQDQHFMLQKEVVERMVAEPGSKVYGRLSVMLQWRYHMELMFVVPPTAFDPPPRV 180 Query: 181 DSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGIDPQARP 240 +SAIVRMIPLAQPL C QA LEQVV KAFSQRRKVIRNC+AG+F+E +L +VGIDPQ RP Sbjct: 181 ESAIVRMIPLAQPLPCDQAKLEQVVLKAFSQRRKVIRNCLAGMFAESDLLEVGIDPQLRP 240 Query: 241 EAVPMEQFVALANLL 255 E +P+ Q+VALAN L Sbjct: 241 ETIPLAQYVALANRL 255 >A4G256.1 RSMA_HERAR Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 255 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 199/255 (78%), Positives = 223/255 (87%) Query: 1 MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVE 60 MKHIPRKRFGQNFLTD+ VLH+II +I P D MVEIGPGLAAMT LLL+G+ +HVVE Sbjct: 1 MKHIPRKRFGQNFLTDDGVLHNIILAIDPQPQDTMVEIGPGLAAMTRLLLDGVNQMHVVE 60 Query: 61 LDRDLVERLKKRFDAARLTVHSADALKFDFSTIPVPDGRKLRVVGNLPYNISSPLLFHLA 120 LDRDLVERLKK FD +L +HSADAL+FDFSTIPVP G KLRVVGNLPYNISSPLLFHLA Sbjct: 61 LDRDLVERLKKTFDPKKLIIHSADALQFDFSTIPVPAGSKLRVVGNLPYNISSPLLFHLA 120 Query: 121 EIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKV 180 E+AP VQDQHFMLQKEVVERMVAEPGSK YGRLSVMLQWRYHMEL+F+VPPTAFDPPP+V Sbjct: 121 EMAPHVQDQHFMLQKEVVERMVAEPGSKTYGRLSVMLQWRYHMELMFIVPPTAFDPPPRV 180 Query: 181 DSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGIDPQARP 240 +SAIVRMIP+ +PL C Q LEQVV KAFSQRRKVIRNC+AG+FSE +L + GI+PQ RP Sbjct: 181 ESAIVRMIPIEKPLPCDQTKLEQVVLKAFSQRRKVIRNCLAGMFSEADLIEAGINPQMRP 240 Query: 241 EAVPMEQFVALANLL 255 E + + Q+VALAN L Sbjct: 241 ETISLAQYVALANRL 255 >F1VWL0.1 F1VWL0_9BURK Dimethyladenosine transferase Length = 259 Score = 372 bits (955), Expect = e-101, Method: Compositional matrix adjust. Identities = 184/255 (72%), Positives = 208/255 (81%) Query: 1 MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVE 60 MKH+ RKRFGQNFLTD+ VL DII +IAPA DAMVEIGPGL AMT LLL+ L LHVVE Sbjct: 1 MKHVARKRFGQNFLTDKQVLQDIIQTIAPARADAMVEIGPGLGAMTRLLLDDLDQLHVVE 60 Query: 61 LDRDLVERLKKRFDAARLTVHSADALKFDFSTIPVPDGRKLRVVGNLPYNISSPLLFHLA 120 LDRDLV RL+K FD +L +HS DAL+FDF T+PVP G+KLRVVGNLPYNISSPLLFHLA Sbjct: 61 LDRDLVVRLQKTFDPKKLLIHSGDALQFDFGTLPVPAGQKLRVVGNLPYNISSPLLFHLA 120 Query: 121 EIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKV 180 VQDQHFMLQKEVVERMVA PG K+YGRLSVMLQWRY M L F+VPPTAFDPPP+V Sbjct: 121 SFTALVQDQHFMLQKEVVERMVAAPGGKSYGRLSVMLQWRYAMSLRFIVPPTAFDPPPRV 180 Query: 181 DSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGIDPQARP 240 +SAIVRMIPL PL C Q LE VV KAFS RRKV+RNC+AG+F+E++L G+DP RP Sbjct: 181 ESAIVRMIPLESPLPCNQQALEAVVLKAFSMRRKVLRNCLAGMFTENQLIDAGVDPTLRP 240 Query: 241 EAVPMEQFVALANLL 255 E + +EQ+V LAN L Sbjct: 241 ETISLEQYVGLANRL 255 >C3XBE5.1 C3XBE5_OXAFO Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 256 Score = 347 bits (889), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 169/255 (66%), Positives = 198/255 (77%) Query: 1 MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVE 60 MKHIPRKRFGQNFL D+ VL DI+++IAP D M+EIGPG+ AMT LL L + V+E Sbjct: 1 MKHIPRKRFGQNFLKDQSVLDDIVSAIAPKPTDHMLEIGPGMGAMTENLLPYLSQMDVIE 60 Query: 61 LDRDLVERLKKRFDAARLTVHSADALKFDFSTIPVPDGRKLRVVGNLPYNISSPLLFHLA 120 LDRDLV LKKRF A +LT+H DAL FDF TI K R+VGNLPYNISSPLLFHL Sbjct: 61 LDRDLVVYLKKRFPADKLTIHQGDALSFDFRTIGASSENKWRIVGNLPYNISSPLLFHLM 120 Query: 121 EIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKV 180 + ++DQHFMLQ+EVVERMVAEPG+KAYGRLSVMLQW+Y MELLF+VPPTAFDP P+V Sbjct: 121 NFSSCIEDQHFMLQREVVERMVAEPGNKAYGRLSVMLQWQYDMELLFIVPPTAFDPMPRV 180 Query: 181 DSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGIDPQARP 240 DSAIVRMIP P AC LE+ VT+AFSQRRK++RN +A LFSE L ++GIDP RP Sbjct: 181 DSAIVRMIPRETPEACSSVALEKTVTQAFSQRRKMLRNNLAPLFSESRLIELGIDPTRRP 240 Query: 241 EAVPMEQFVALANLL 255 E + +EQF+ LAN L Sbjct: 241 EDLTVEQFILLANHL 255 >C3X570.1 C3X570_OXAFO Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 256 Score = 315 bits (806), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 162/255 (63%), Positives = 192/255 (75%) Query: 1 MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVE 60 MKH+PRKRFGQNFL D VL II +IAPAA D MVEIGPG+ AMT LL L L V+E Sbjct: 1 MKHLPRKRFGQNFLKDPSVLDKIIAAIAPAASDIMVEIGPGMGAMTGKLLPSLSRLEVIE 60 Query: 61 LDRDLVERLKKRFDAARLTVHSADALKFDFSTIPVPDGRKLRVVGNLPYNISSPLLFHLA 120 LDRDLV L+ F +L VH DAL FD ++ G K+R+VGNLPYNIS+PLLFHL Sbjct: 61 LDRDLVVYLRNTFPPEKLVVHQGDALAFDMRSLKEQSGEKIRIVGNLPYNISTPLLFHLL 120 Query: 121 EIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKV 180 E + V+DQHFMLQ+EVVERMVAEPGSKAYGRLSVMLQW+Y M++LF+VPP AFDP PKV Sbjct: 121 EFSLFVKDQHFMLQREVVERMVAEPGSKAYGRLSVMLQWQYDMDMLFIVPPEAFDPQPKV 180 Query: 181 DSAIVRMIPLAQPLACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGIDPQARP 240 DSA+VRMIP P C LE+ VT+AFSQRRK++RN +A F+E EL +GI+P RP Sbjct: 181 DSAVVRMIPKENPEKCSFPALEKTVTQAFSQRRKMLRNNLAPFFTEAELTGLGIEPTKRP 240 Query: 241 EAVPMEQFVALANLL 255 E + +EQF+ LAN L Sbjct: 241 EELSVEQFIRLANHL 255 >Q2YBP5.1 RSMA_NITMU Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 259 Score = 302 bits (773), Expect = 4e-80, Method: Compositional matrix adjust. Identities = 144/255 (56%), Positives = 186/255 (72%), Gaps = 6/255 (2%) Query: 1 MKHIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVE 60 M+H PR+RFGQNFL D + DI+ ++ P +D MVEIGPGL A+T LL+ L HLHVVE Sbjct: 1 MQHTPRRRFGQNFLVDSQTVTDIVHALHPRREDVMVEIGPGLGALTQPLLQSLEHLHVVE 60 Query: 61 LDRDLVERLKKRFDAARLTVHSADALKFDFSTIPVPDGRKLRVVGNLPYNISSPLLFHLA 120 +DRD+V+RL+ F A RLTVH DAL+FDFS++ G LRVVGNLPYNIS+PLLFHL+ Sbjct: 61 IDRDIVKRLRNEFSAKRLTVHEGDALEFDFSSL----GESLRVVGNLPYNISTPLLFHLS 116 Query: 121 EIAPQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKV 180 ++D HFMLQKEVV RMVA+P + YGRLSVMLQ R+ ME LF+VPP F PPPKV Sbjct: 117 RFTDHLRDMHFMLQKEVVARMVAKPSTSDYGRLSVMLQCRFEMEQLFIVPPECFHPPPKV 176 Query: 181 DSAIVRMIPLAQPL--ACQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVGIDPQA 238 SA+VRMIPL +PL A Q+ L ++V+ AFSQRRK++RN + + ++ ++GID Sbjct: 177 QSAVVRMIPLKKPLIEASQEKLFAEIVSAAFSQRRKILRNTLRDYLTGEDYLKLGIDSNL 236 Query: 239 RPEAVPMEQFVALAN 253 R E + + Q+VA+ N Sbjct: 237 RAENLSITQYVAITN 251 >Q0KEA7.1 RSMA_CUPNH Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 280 Score = 300 bits (769), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 157/264 (59%), Positives = 192/264 (72%), Gaps = 11/264 (4%) Query: 3 HIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVELD 62 H+ RKRFGQNFL D+ ++H I+ +I+P ADD +VEIGPGL A+T LLE + + VVELD Sbjct: 9 HVARKRFGQNFLVDDTIIHGIVNAISPQADDVLVEIGPGLGALTDPLLERIPQMQVVELD 68 Query: 63 RDLVERLKKRFDAARLTVHSADALKFDFSTIPVPDGRKLRVVGNLPYNISSPLLFHLAEI 122 RDLVERL++R+ RL VH+ DAL FDF + VP GR LR+VGNLPYNISSPLLFHL + Sbjct: 69 RDLVERLRRRY-GERLQVHAGDALAFDFDKLAVP-GRPLRIVGNLPYNISSPLLFHLMDF 126 Query: 123 APQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKVDS 182 A V+DQHFMLQKEVVERMVAEPGSKA+GRLS+MLQ RY+ME + VPP AF+PPPKVDS Sbjct: 127 ADHVRDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHVLDVPPGAFNPPPKVDS 186 Query: 183 AIVRMIP--------LAQPLA-CQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVG 233 A+VRMIP L P A C +L VVT AFSQRRKV+RN ++ L + + +G Sbjct: 187 AVVRMIPWPRHSDGRLRSPHADCDITVLGDVVTAAFSQRRKVLRNTLSFLRDQVDFDAMG 246 Query: 234 IDPQARPEAVPMEQFVALANLLAA 257 D R E VP+ ++V LA L Sbjct: 247 FDLGRRAEEVPVGEYVELARRLGG 270 >B2AH89.1 RSMA_CUPTR Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 277 Score = 299 bits (765), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 157/265 (59%), Positives = 191/265 (72%), Gaps = 11/265 (4%) Query: 3 HIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVELD 62 H+ RKRFGQNFL D+ ++H I+ +I+P A D +VEIGPGL A+T LLE + + VVELD Sbjct: 9 HVARKRFGQNFLVDDTIIHGIVNAISPQAGDVLVEIGPGLGALTDPLLERIPQMQVVELD 68 Query: 63 RDLVERLKKRFDAARLTVHSADALKFDFSTIPVPDGRKLRVVGNLPYNISSPLLFHLAEI 122 RDLVERL++R+ RL VH+ DAL FDF + VP GR LR+VGNLPYNISSPLLFHL E Sbjct: 69 RDLVERLRRRY-GERLQVHAGDALDFDFDKLAVP-GRPLRIVGNLPYNISSPLLFHLMEF 126 Query: 123 APQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKVDS 182 A V DQHFMLQKEVVERMVAEPGSKA+GRLS+MLQ RY+ME + VPP AF+PPPKVDS Sbjct: 127 ADHVHDQHFMLQKEVVERMVAEPGSKAFGRLSIMLQVRYYMEHVLDVPPGAFNPPPKVDS 186 Query: 183 AIVRMIP--------LAQPLA-CQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVG 233 A+VRMIP L P A C +L VVT AFSQRRKV+RN ++ L + + +G Sbjct: 187 AVVRMIPWPRHGDGRLRSPHADCDITVLGDVVTAAFSQRRKVLRNTLSFLRDQVDFDAMG 246 Query: 234 IDPQARPEAVPMEQFVALANLLAAR 258 D R E VP+ ++V LA L + Sbjct: 247 FDLGRRAEEVPVGEYVELARRLGDK 271 >Q475Q1.1 RSMA_CUPPJ Ribosomal RNA small subunit methyltransferase A EC=2.1.1.182 Length = 278 Score = 298 bits (763), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 155/264 (58%), Positives = 190/264 (71%), Gaps = 11/264 (4%) Query: 3 HIPRKRFGQNFLTDEMVLHDIITSIAPAADDAMVEIGPGLAAMTALLLEGLRHLHVVELD 62 H+ RKRFGQNFL D+ ++H I+ +I P ADD +VEIGPGL A+T LLE + + VVELD Sbjct: 9 HVARKRFGQNFLVDDSIIHGIVNAINPLADDVLVEIGPGLGALTDPLLERVPQMQVVELD 68 Query: 63 RDLVERLKKRFDAARLTVHSADALKFDFSTIPVPDGRKLRVVGNLPYNISSPLLFHLAEI 122 RDLVERL++R+ RL VH+ DAL FDF + VP GR LR+VGNLPYNISSPLLFHL + Sbjct: 69 RDLVERLRRRY-GDRLQVHAGDALAFDFGRLAVP-GRPLRIVGNLPYNISSPLLFHLMDY 126 Query: 123 APQVQDQHFMLQKEVVERMVAEPGSKAYGRLSVMLQWRYHMELLFVVPPTAFDPPPKVDS 182 A V DQHFMLQKEVV+RMVAEPGSKA+GRLS+MLQ RYHME + VPP +F+PPPKVDS Sbjct: 127 ADHVHDQHFMLQKEVVDRMVAEPGSKAFGRLSIMLQVRYHMEHVLDVPPGSFNPPPKVDS 186 Query: 183 AIVRMIP--------LAQPLA-CQQALLEQVVTKAFSQRRKVIRNCVAGLFSEDELRQVG 233 A+VRMIP L P A C +L +VT AFSQRRKV+RN ++ L + + +G Sbjct: 187 AVVRMIPWPRTESGRLRSPHADCDITVLGDLVTAAFSQRRKVLRNTLSFLRDQIDFEAIG 246 Query: 234 IDPQARPEAVPMEQFVALANLLAA 257 D R E VP+ ++V LA L Sbjct: 247 FDLGRRAEEVPVGEYVELARRLGG 270