BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0174.p (154 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IYL5.1 D8IYL5_HERSS Regulatory protein recX 305 1e-81 O86082.2 RECX_HERSE Regulatory protein recX 305 1e-81 A6T203.1 RECX_JANMA Regulatory protein recX 184 4e-45 A4G8B2.1 RECX_HERAR Regulatory protein recX 178 3e-43 B5SGP8.1 B5SGP8_RALSO Regulatory protein recX 157 4e-37 B5S8Q8.1 B5S8Q8_RALSO Regulatory protein recX 2 157 5e-37 D8NYA7.1 D8NYA7_RALSO Regulatory protein recX 5 155 2e-36 D8NP53.1 D8NP53_RALSO Regulatory protein recX 4 155 2e-36 Q8Y1Y5.1 RECX_RALSO Regulatory protein recX 154 4e-36 D8N7S7.1 D8N7S7_RALSO Regulatory protein recX 3 153 7e-36 >D8IYL5.1 D8IYL5_HERSS Regulatory protein recX Length = 154 Score = 305 bits (782), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 153/154 (99%), Positives = 154/154 (100%) Query: 1 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE Sbjct: 1 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60 Query: 61 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE Sbjct: 61 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120 Query: 121 TRAKQMRFLQQRGFSHRSIREAFQTAWLDEDEPS 154 TRAKQMRFLQQRGFSHRSIREAFQTAWLDED+PS Sbjct: 121 TRAKQMRFLQQRGFSHRSIREAFQTAWLDEDDPS 154 >O86082.2 RECX_HERSE Regulatory protein recX Length = 154 Score = 305 bits (782), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 153/154 (99%), Positives = 154/154 (100%) Query: 1 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE Sbjct: 1 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60 Query: 61 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE Sbjct: 61 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120 Query: 121 TRAKQMRFLQQRGFSHRSIREAFQTAWLDEDEPS 154 TRAKQMRFLQQRGFSHRSIREAFQTAWLDED+PS Sbjct: 121 TRAKQMRFLQQRGFSHRSIREAFQTAWLDEDDPS 154 >A6T203.1 RECX_JANMA Regulatory protein recX Length = 151 Score = 184 bits (467), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 95/151 (62%), Positives = 115/151 (76%) Query: 1 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60 M + +SLKARAL+YLS+REHSR EL RKLA +AQEGDD+EALL LE ++FLSQ RFSE Sbjct: 1 MAKLQVSLKARALRYLSAREHSRQELGRKLARHAQEGDDVEALLDTLEAAKFLSQSRFSE 60 Query: 61 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120 SLVHRRAAR+GN RILSEL HGI+ +++ D+KA+L + E RA V RKF + E Sbjct: 61 SLVHRRAARFGNSRILSELKSHGIDPDSLTDIKANLESDEFARARAVWERKFGTVATNQE 120 Query: 121 TRAKQMRFLQQRGFSHRSIREAFQTAWLDED 151 RAKQMRFL QRGFSHR+I+ A + A DED Sbjct: 121 ERAKQMRFLMQRGFSHRAIQAAMRAAGKDED 151 >A4G8B2.1 RECX_HERAR Regulatory protein recX Length = 151 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 93/151 (61%), Positives = 114/151 (75%) Query: 1 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60 M + +SLKARAL+YLS+REHSR ELARKLA YAQEGDDIEALL LE + F+S+ RFSE Sbjct: 1 MAKLQVSLKARALRYLSAREHSRQELARKLARYAQEGDDIEALLDTLEAANFMSEARFSE 60 Query: 61 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120 SLV+RRAAR+GN RILSEL H I+ +++ ++KA LA E RA +V RKF +DA Sbjct: 61 SLVNRRAARFGNSRILSELKSHNIDPDSLTEIKAALAQDEVARAREVWTRKFGVAASDAN 120 Query: 121 TRAKQMRFLQQRGFSHRSIREAFQTAWLDED 151 RAKQMRFL QRGFSHR+I+ A + +ED Sbjct: 121 GRAKQMRFLLQRGFSHRAIQAAMRAKEENED 151 >B5SGP8.1 B5SGP8_RALSO Regulatory protein recX Length = 159 Score = 157 bits (398), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 83/157 (52%), Positives = 105/157 (66%), Gaps = 3/157 (1%) Query: 1 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60 +PR P+SLKARAL YLS REHSR EL RKLAP+A+ D++EALL WLE +LS RF+E Sbjct: 3 LPRQPLSLKARALGYLSRREHSRAELRRKLAPHAESADEVEALLDWLEGENWLSNARFAE 62 Query: 61 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120 S+VHRRA RYG R++ EL H ++ +A+ ++KA L A EA RA V R+F PP D Sbjct: 63 SVVHRRAGRYGTARLMQELKTHQLDDQALGEVKAQLQASEAARAKAVWERRFGRPPVDMA 122 Query: 121 TRAKQMRFLQQRGFSHRSIREAFQTA---WLDEDEPS 154 RAKQ+RF+ RGFS + Q A D DEP+ Sbjct: 123 ERAKQVRFMMARGFSRAVVSRIIQGADELLDDSDEPA 159 >B5S8Q8.1 B5S8Q8_RALSO Regulatory protein recX 2 Length = 159 Score = 157 bits (397), Expect = 5e-37, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 104/156 (66%), Gaps = 3/156 (1%) Query: 1 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60 +PR P+SLKARAL YLS REHSR EL RKLAP+A+ D++EALL WLE +LS RF+E Sbjct: 3 LPRQPLSLKARALGYLSRREHSRAELRRKLAPHAESADEVEALLDWLEGENWLSNARFAE 62 Query: 61 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120 S+VHRRA RYG R++ EL H ++ +A+ ++KA L A EA RA V R+F PP D Sbjct: 63 SVVHRRAGRYGTARLMQELKTHQLDDQALGEVKAQLQASEAARAKAVWERRFGRPPVDMA 122 Query: 121 TRAKQMRFLQQRGFSHRSIREAFQTA---WLDEDEP 153 RAKQ+RF+ RGFS + Q A D DEP Sbjct: 123 ERAKQVRFMMARGFSRAVVSRIIQGADELLDDSDEP 158 >D8NYA7.1 D8NYA7_RALSO Regulatory protein recX 5 Length = 159 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 80/146 (54%), Positives = 99/146 (67%) Query: 1 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60 +PR P+SLKARAL YLS REHSR EL RKLAP+A+ D++EALL WLE +LS RF+E Sbjct: 3 LPRQPLSLKARALGYLSRREHSRAELRRKLAPHAESADEVEALLDWLEGENWLSNARFAE 62 Query: 61 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120 S+VHRRA RYG R++ EL H + EA+ ++KA L A E RA V R+F PPAD Sbjct: 63 SVVHRRAGRYGTARLMQELKTHELGDEALGEVKAQLQASETARAKAVWERRFGRPPADMA 122 Query: 121 TRAKQMRFLQQRGFSHRSIREAFQTA 146 RAKQ+RF+ RGFS + Q A Sbjct: 123 ERAKQVRFMMARGFSRAVVSRIIQGA 148 >D8NP53.1 D8NP53_RALSO Regulatory protein recX 4 Length = 159 Score = 155 bits (392), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 79/146 (54%), Positives = 100/146 (68%) Query: 1 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60 +PR P+SLKARAL YLS REHSR EL RKLAP+A+ D++EALL WLE +LS RF+E Sbjct: 3 LPRQPLSLKARALGYLSRREHSRAELRRKLAPHAESADEVEALLDWLEGENWLSNARFAE 62 Query: 61 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120 S+VHRRA RYG R++ EL H ++ +A+ ++KA L A EA RA V R+F PP D Sbjct: 63 SVVHRRAGRYGTARLMQELKTHQLDDQALGEVKAQLQASEAARAKAVWERRFGRPPVDMA 122 Query: 121 TRAKQMRFLQQRGFSHRSIREAFQTA 146 RAKQ+RF+ RGFS + Q A Sbjct: 123 ERAKQVRFMVARGFSRAVVSRIIQGA 148 >Q8Y1Y5.1 RECX_RALSO Regulatory protein recX Length = 159 Score = 154 bits (389), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 84/156 (53%), Positives = 106/156 (67%), Gaps = 3/156 (1%) Query: 1 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60 +PR P+SLKARAL YLS REHSR EL RKLAP+A+ D++EALL WLE +LS RF+E Sbjct: 3 LPRQPLSLKARALGYLSRREHSRAELRRKLAPHAESVDEVEALLDWLEGENWLSNTRFAE 62 Query: 61 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120 S+VHRRA+RYG R++ EL H + +A+ ++KA L A E RA V R+F PPAD Sbjct: 63 SVVHRRASRYGTARLMQELKTHELGDDALGEVKAQLQASEMARAKAVWERRFGRPPADMA 122 Query: 121 TRAKQMRFLQQRGFSHRSIREAFQ--TAWLDE-DEP 153 RAKQ+RF+ RGFS + Q A LD+ DEP Sbjct: 123 ERAKQVRFMVARGFSRAVVSRIIQGADALLDDGDEP 158 >D8N7S7.1 D8N7S7_RALSO Regulatory protein recX 3 Length = 159 Score = 153 bits (387), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 83/156 (53%), Positives = 104/156 (66%), Gaps = 3/156 (1%) Query: 1 MPRPPISLKARALKYLSSREHSRLELARKLAPYAQEGDDIEALLQWLEQSRFLSQERFSE 60 +PR P+SLKARAL YLS REHSR EL RKLAP+A+ D++E LL WLE +LS RF+E Sbjct: 3 LPRQPLSLKARALGYLSRREHSRAELRRKLAPHAESADEVETLLDWLEGENWLSNTRFAE 62 Query: 61 SLVHRRAARYGNQRILSELHGHGIEGEAIADLKADLAAGEAERAAQVLRRKFTAPPADAE 120 S+VHRRA RYG R++ EL H + +A+ ++KA L A E RA V R+F PPAD Sbjct: 63 SVVHRRAGRYGTARLMQELKTHELGADALGEVKAQLQASEMARAKAVWGRRFGRPPADMA 122 Query: 121 TRAKQMRFLQQRGFSHRSIREAFQ--TAWLDE-DEP 153 RAKQ+RF+ RGFS + Q A LD+ DEP Sbjct: 123 ERAKQVRFMVARGFSRAVVSRIIQGADALLDDGDEP 158