BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0011.0171.p         (203 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IYL2.1 D8IYL2_HERSS Sensor histidine kinase EC=2.7.3.-              257   7e-67
A4G505.1 A4G505_HERAR Putative Signal transduction histidine kin...   149   2e-34
A6SZF5.1 A6SZF5_JANMA Two-component sensor histidine kinase           135   4e-30
D5CR53.1 D5CR53_SIDLE Histidine kinase                                 83   2e-14
D9SGZ1.1 D9SGZ1_GALCS Histidine kinase                                 80   1e-13

>D8IYL2.1 D8IYL2_HERSS Sensor histidine kinase EC=2.7.3.-
          Length = 202

 Score =  257 bits (656), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 128/129 (99%), Positives = 128/129 (99%)

Query: 1   MDPKLAAIIIHDIKNSLGVLEGELRRLSDDVPRVQQAHVTCLALQEKLIAFLTLYKADSQ 60
           MDPKLAAIIIHDIKNSLGVLEGELRRLSDDVPRVQQAHVTCLALQEKLIAFLTLYKADSQ
Sbjct: 1   MDPKLAAIIIHDIKNSLGVLEGELRRLSDDVPRVQQAHVTCLALQEKLIAFLTLYKADSQ 60

Query: 61  GLRAQVEAVSPQDFLQSLVREQAVARVQGALTLVVDETDMPIIGFFDEHLVALALEAALQ 120
           GLRAQVEAVSPQDFLQSLVREQAVARVQGALTLVVDETDMPIIGFFDEHLVALALEAALQ
Sbjct: 61  GLRAQVEAVSPQDFLQSLVREQAVARVQGALTLVVDETDMPIIGFFDEHLVALALEAALQ 120

Query: 121 NASRFARAR 129
           NASRFAR R
Sbjct: 121 NASRFARTR 129


>A4G505.1 A4G505_HERAR Putative Signal transduction histidine kinase sensor
           protein
          Length = 203

 Score =  149 bits (377), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 73/130 (56%), Positives = 98/130 (75%), Gaps = 4/130 (3%)

Query: 1   MDPKLAAIIIHDIKNSLGVLEGELRRLSDDVPRVQ--QAHVTCLALQEKLIAFLTLYKAD 58
           M+P+L+AI++HD+KN LGVLEG L  L+ D+ R Q  QAH +C+AL+EK+IAFLTLYKA 
Sbjct: 3   MNPQLSAIVVHDLKNELGVLEGRLATLTVDLDREQALQAHASCIALREKMIAFLTLYKAT 62

Query: 59  SQGLRAQVEAVSPQDFLQSLVREQAVARVQGALTLVVDETDMPIIGFFDEHLVALALEAA 118
            QGL  ++EAV P DFL+ L+R    +R +  LTL +D   +P I FFDEHL+ LA+ AA
Sbjct: 63  EQGLNPRIEAVHPDDFLRELIRNHVHSRPE--LTLTMDSDALPAIAFFDEHLLGLAMNAA 120

Query: 119 LQNASRFARA 128
           LQNA+RFA++
Sbjct: 121 LQNATRFAKS 130


>A6SZF5.1 A6SZF5_JANMA Two-component sensor histidine kinase
          Length = 199

 Score =  135 bits (339), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 72/130 (55%), Positives = 99/130 (76%), Gaps = 6/130 (4%)

Query: 1   MDPKLAAIIIHDIKNSLGVLEGELRRLSDDV--PRVQQAHVTCLALQEKLIAFLTLYKAD 58
           MDP+LAAII+HD+KN+LG LEGEL  L++D+   +  +AH  CLAL++K+I FLTLYKA 
Sbjct: 1   MDPQLAAIIVHDLKNALGELEGELAALTEDLDHGKASEAHHHCLALRDKMIGFLTLYKAS 60

Query: 59  SQGLRAQVEAVSPQDFLQSLVREQAVARVQGALTLVVDETDMPIIGFFDEHLVALALEAA 118
           +QGL+  +EAV+P+ FL+ L+R    A  +  +T+ +D  DMP I FFDEHL+ LAL+AA
Sbjct: 61  TQGLQPHIEAVNPEGFLKGLIR----AHNKAGITITLDTDDMPAIAFFDEHLLGLALDAA 116

Query: 119 LQNASRFARA 128
           LQNA RFA++
Sbjct: 117 LQNALRFAKS 126


>D5CR53.1 D5CR53_SIDLE Histidine kinase
          Length = 224

 Score = 83.2 bits (204), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 55/148 (37%), Positives = 86/148 (58%), Gaps = 15/148 (10%)

Query: 1   MDPKLAAIIIHDIKNSLGVLEGELRRLSD--DVP-RVQQAHVTCLALQEKLIAFLTLYKA 57
           M   L+A++IHDIKNSL +LE +L +L+   D P   ++A+  C+ L+ +LI+FLTLYK 
Sbjct: 1   MQQALSALVIHDIKNSLALLEADLEQLNHRADAPDEARKAYQRCIELKSRLISFLTLYKH 60

Query: 58  DSQGLRAQVEAVSPQDFLQSLV-REQAV---ARVQGALTLVVDETDMPI--------IGF 105
           +   L   +  +   +FL+ ++   Q+V   +R   A+ + VDE  + I        +  
Sbjct: 61  EQGRLLPNLGEIDLAEFLEDMIAGSQSVTMASRHGHAIAVNVDEDRIRIATEVRHKGVAS 120

Query: 106 FDEHLVALALEAALQNASRFARARASRW 133
            DE+LV LALE+AL NA R+A +R   W
Sbjct: 121 LDEYLVDLALESALNNAVRYAASRVDVW 148


>D9SGZ1.1 D9SGZ1_GALCS Histidine kinase
          Length = 221

 Score = 80.5 bits (197), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 50/145 (34%), Positives = 83/145 (57%), Gaps = 12/145 (8%)

Query: 1   MDPKLAAIIIHDIKNSLGVLEGELRRL--SDDVP-RVQQAHVTCLALQEKLIAFLTLYKA 57
           M+  L+A+++HDIKN+L +LE +L +L   ++ P    +A+  C+ L+ +LI+FLTLYK 
Sbjct: 1   MEKTLSALVVHDIKNALALLEIDLEQLIHRENAPTEGLRAYRRCVDLKSRLISFLTLYKH 60

Query: 58  DSQGLRAQVEAVSPQDFLQSLVREQ-----AVARVQGALTLVVDETDMPI----IGFFDE 108
           D  GL+   + V   +F++ LVR       A +     +T+ +D   M +      + DE
Sbjct: 61  DQSGLQPLRQEVVLLEFIEDLVRNSQSGMAAESHHGHKITVSIDYEKMKMGSMATAWLDE 120

Query: 109 HLVALALEAALQNASRFARARASRW 133
           +LV LA+E+A+ NA R+   R   W
Sbjct: 121 NLVELAMESAINNAIRYTHHRVGVW 145