BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0124.p (181 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IYG6.1 D8IYG6_HERSS Small protein A (TmRNA-binding) protein 371 e-101 A4G8E1.1 A4G8E1_HERAR Putative uncharacterized protein 161 4e-38 A6T234.1 A6T234_JANMA Uncharacterized conserved protein 150 7e-35 C3XCM1.1 C3XCM1_OXAFO SmpA/OmlA family protein 146 1e-33 F1VUS1.1 F1VUS1_9BURK SmpA/OmlA domain protein 140 9e-32 C3X6F1.1 C3X6F1_OXAFO SmpA/OmlA family protein 137 5e-31 D8NY65.1 D8NY65_RALSO Putative lipoprotein, SmpA/OmlA family 130 1e-28 E2SZS5.1 E2SZS5_9RALS Lipoprotein, SmpA/OmlA family 123 9e-27 C6BDR1.1 C6BDR1_RALP1 SmpA/OmlA domain protein 123 1e-26 B2UCA3.1 B2UCA3_RALPJ SmpA/OmlA domain protein 122 3e-26 >D8IYG6.1 D8IYG6_HERSS Small protein A (TmRNA-binding) protein Length = 181 Score = 371 bits (953), Expect = e-101, Method: Compositional matrix adjust. Identities = 181/181 (100%), Positives = 181/181 (100%) Query: 1 MLMLSRLKSRHHSAAIGLAALLALSLAGCSSTKAPDQAAADAQGVKVSGKSNSLFGFLRP 60 MLMLSRLKSRHHSAAIGLAALLALSLAGCSSTKAPDQAAADAQGVKVSGKSNSLFGFLRP Sbjct: 1 MLMLSRLKSRHHSAAIGLAALLALSLAGCSSTKAPDQAAADAQGVKVSGKSNSLFGFLRP 60 Query: 61 YRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHTNRWDYDFRLAKGNGEIM 120 YRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHTNRWDYDFRLAKGNGEIM Sbjct: 61 YRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHTNRWDYDFRLAKGNGEIM 120 Query: 121 TSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITDAKVGSKAKLTDDDVKPASPVAPSSAN 180 TSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITDAKVGSKAKLTDDDVKPASPVAPSSAN Sbjct: 121 TSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITDAKVGSKAKLTDDDVKPASPVAPSSAN 180 Query: 181 K 181 K Sbjct: 181 K 181 >A4G8E1.1 A4G8E1_HERAR Putative uncharacterized protein Length = 216 Score = 161 bits (407), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 76/117 (64%), Positives = 92/117 (78%), Gaps = 2/117 (1%) Query: 38 AAADAQGVKVSGKSNSLFGFLRPYRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLL 97 A + A GV+ + ++N G RPYR DIQQGNFVS+EMVAQL+ G+T+DQV F+LGTPLL Sbjct: 95 ATSGATGVQ-TKQANRFLGIFRPYRPDIQQGNFVSQEMVAQLKEGMTQDQVIFLLGTPLL 153 Query: 98 TDMFHTNRWDYDFRLAKGNGEIMTSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITD 154 D+FH +RWDY FRL KGNGEI TSRVTVFFKD L+ H +GG DLPTE +YL I+D Sbjct: 154 NDLFHADRWDYAFRLQKGNGEITTSRVTVFFKDKLVSHFEGG-DLPTEKDYLDRISD 209 >A6T234.1 A6T234_JANMA Uncharacterized conserved protein Length = 253 Score = 150 bits (379), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 73/118 (61%), Positives = 88/118 (74%), Gaps = 2/118 (1%) Query: 44 GVKVSGKSNSLFGFLRPYRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHT 103 GV+V + G PYR DIQQGNFVS+EMVAQL+ G+T+DQV F+LGTPLLTD+FH Sbjct: 137 GVQVK-REKRFLGIFSPYRPDIQQGNFVSQEMVAQLKEGMTQDQVIFLLGTPLLTDVFHG 195 Query: 104 NRWDYDFRLAKGNGEIMTSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITD-AKVGSK 160 +RWDY FR+ KGNGEI +SRVTV FKD L+ +GG DLPTE +YL I D AK +K Sbjct: 196 DRWDYAFRMQKGNGEITSSRVTVHFKDKLVSSFEGGGDLPTEKDYLARIADKAKAANK 253 >C3XCM1.1 C3XCM1_OXAFO SmpA/OmlA family protein Length = 416 Score = 146 bits (369), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 64/103 (62%), Positives = 84/103 (81%), Gaps = 1/103 (0%) Query: 58 LRPYRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHTNRWDYDFRLAKGNG 117 L PY++DIQQGNFVS EM+++L+PG+T++QVRFVLGTPLLTDMFH NRWDY FRL K NG Sbjct: 102 LTPYKVDIQQGNFVSSEMLSKLKPGMTKEQVRFVLGTPLLTDMFHANRWDYLFRLQKPNG 161 Query: 118 EIMTSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITDAKVGSK 160 + T+RVTVFFKD+L+D + +LP E++YL+ I KV ++ Sbjct: 162 ALTTNRVTVFFKDNLVDRI-VHDNLPDEAQYLSNIAGDKVPTE 203 >F1VUS1.1 F1VUS1_9BURK SmpA/OmlA domain protein Length = 182 Score = 140 bits (353), Expect = 9e-32, Method: Compositional matrix adjust. Identities = 69/128 (53%), Positives = 88/128 (68%), Gaps = 6/128 (4%) Query: 54 LFGFLRPYRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHTNRWDYDFRLA 113 G L PYRIDI QGNF+S EMV QL+ G+T DQVRF LGTPL+ D+FH +RWDY FR+ Sbjct: 59 FLGVLSPYRIDIPQGNFISEEMVQQLKEGMTPDQVRFALGTPLIIDIFHADRWDYVFRML 118 Query: 114 KGNGEIMTSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITDAKVGSKAKLTDDDVKPASP 173 K N E+++SRVTV+FKD + +GG +LPTE +YL ++ V K K + P P Sbjct: 119 KRNDEVLSSRVTVYFKDGRVSRFEGG-NLPTEVDYLEMLAGG-VPQKVK----PLAPTVP 172 Query: 174 VAPSSANK 181 VAPSSA + Sbjct: 173 VAPSSARQ 180 >C3X6F1.1 C3X6F1_OXAFO SmpA/OmlA family protein Length = 422 Score = 137 bits (346), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 62/125 (49%), Positives = 89/125 (71%), Gaps = 5/125 (4%) Query: 32 TKAPDQAAADAQG---VKVSGKSNSLFGFLRPYRIDIQQGNFVSREMVAQLRPGLTRDQV 88 +K P++ +A+ K +G L L PY++++QQGNF+S EM+A+++PG+T++QV Sbjct: 82 SKQPEKVTTEAENELNTKPTGMKKWL-SMLTPYKVNVQQGNFISAEMLAKVQPGMTKEQV 140 Query: 89 RFVLGTPLLTDMFHTNRWDYDFRLAKGNGEIMTSRVTVFFKDDLLDHVQGGQDLPTESEY 148 RFVLGTPLLTDMFH NRWDY FRL K NG I T+R+ +FF D+L++ + LP E+ Y Sbjct: 141 RFVLGTPLLTDMFHANRWDYLFRLQKPNGAITTNRLVIFFTDNLVERMTSDH-LPDEAAY 199 Query: 149 LTLIT 153 L+ IT Sbjct: 200 LSHIT 204 >D8NY65.1 D8NY65_RALSO Putative lipoprotein, SmpA/OmlA family Length = 218 Score = 130 bits (326), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 68/138 (49%), Positives = 87/138 (63%), Gaps = 18/138 (13%) Query: 18 LAALLALS--LAGCSSTKAPDQAAADAQGVKVSGKSNSLFGFLRPYRIDIQQGNFVSREM 75 L A+LA S LAGCS+ + + A+A + PYRIDI QGNFVSRE Sbjct: 23 LGAVLAASTLLAGCSTYDSSTRKIANA---------------ITPYRIDIVQGNFVSREQ 67 Query: 76 VAQLRPGLTRDQVRFVLGTPLLTDMFHTNRWDYDFRLAKGNGEIMTSR-VTVFFKDDLLD 134 +QL+ G+TRDQVR+VLG+PLLTDMFH NRWDY F +GN ++ R +TV+F+DD L Sbjct: 68 ASQLKEGMTRDQVRYVLGSPLLTDMFHGNRWDYVFSFKRGNANVVQERKLTVWFEDDRLA 127 Query: 135 HVQGGQDLPTESEYLTLI 152 G DLP+E E + I Sbjct: 128 KWAGADDLPSEVELIAEI 145 >E2SZS5.1 E2SZS5_9RALS Lipoprotein, SmpA/OmlA family Length = 218 Score = 123 bits (309), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 59/100 (59%), Positives = 71/100 (71%), Gaps = 1/100 (1%) Query: 58 LRPYRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHTNRWDYDFRLAKGNG 117 + PYRIDI QGNFVSRE AQL+ G+TRDQVRFVLGTPLLTDMFH NRWDY F +GN Sbjct: 50 ITPYRIDIVQGNFVSREQAAQLKEGMTRDQVRFVLGTPLLTDMFHANRWDYIFSFKRGNT 109 Query: 118 EIMTS-RVTVFFKDDLLDHVQGGQDLPTESEYLTLITDAK 156 ++ R+TV+F D L G +LP+ESE ++ I K Sbjct: 110 SVVQERRLTVWFDGDRLAKWVGADELPSESELISEIDGIK 149 >C6BDR1.1 C6BDR1_RALP1 SmpA/OmlA domain protein Length = 218 Score = 123 bits (309), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 59/100 (59%), Positives = 71/100 (71%), Gaps = 1/100 (1%) Query: 58 LRPYRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHTNRWDYDFRLAKGNG 117 + PYRIDI QGNFVSRE AQL+ G+TRDQVRFVLGTPLLTDMFH NRWDY F +GN Sbjct: 50 ITPYRIDIVQGNFVSREQAAQLKEGMTRDQVRFVLGTPLLTDMFHANRWDYIFSFKRGNT 109 Query: 118 EIMTS-RVTVFFKDDLLDHVQGGQDLPTESEYLTLITDAK 156 ++ R+TV+F D L G +LP+ESE ++ I K Sbjct: 110 SVVQERRLTVWFDGDRLAKWVGADELPSESELISEIDGIK 149 >B2UCA3.1 B2UCA3_RALPJ SmpA/OmlA domain protein Length = 218 Score = 122 bits (305), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 58/100 (58%), Positives = 71/100 (71%), Gaps = 1/100 (1%) Query: 58 LRPYRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHTNRWDYDFRLAKGNG 117 + PYRIDI QGNFVSRE AQL+ G+TRDQVRFVLGTPLLTDMFH NRWDY F +GN Sbjct: 50 ITPYRIDIVQGNFVSREQAAQLKEGMTRDQVRFVLGTPLLTDMFHANRWDYIFSFKRGNT 109 Query: 118 EIMTSR-VTVFFKDDLLDHVQGGQDLPTESEYLTLITDAK 156 ++ R +TV+F + L G +LP+ESE ++ I K Sbjct: 110 AVVQERKLTVWFDGERLAKWVGADELPSESELISEIDGIK 149