BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0038.p (262 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IXG5.1 D8IXG5_HERSS Repressor transcription regulator protein 531 e-149 A6T247.1 A6T247_JANMA Transcriptional regulator 319 2e-85 B1FWI8.1 B1FWI8_9BURK Helix-turn-helix type 11 domain protein 241 6e-62 B1JVX0.1 B1JVX0_BURCC Helix-turn-helix type 11 domain protein 239 3e-61 E1T782.1 E1T782_BURSG Helix-turn-helix type 11 domain protein 239 3e-61 Q1BZ20.1 Q1BZ20_BURCA Helix-turn-helix, type 11 236 3e-60 A0K4N1.1 A0K4N1_BURCH Helix-turn-helix, type 11 domain protein 236 3e-60 A4JBM6.1 A4JBM6_BURVG Helix-turn-helix, type 11 domain protein 234 1e-59 F2L7R2.1 F2L7R2_BURGA Helix-turn-helix, type 11 233 2e-59 B5WW07.1 B5WW07_9BURK Helix-turn-helix type 11 domain protein 233 2e-59 >D8IXG5.1 D8IXG5_HERSS Repressor transcription regulator protein Length = 262 Score = 531 bits (1367), Expect = e-149, Method: Compositional matrix adjust. Identities = 261/262 (99%), Positives = 262/262 (100%) Query: 1 LHSSIEAGGHCSGGMPEWRASCFPAPAMRRADRLFQITQYLRGRRLTTARQLATWLSVSE 60 +HSSIEAGGHCSGGMPEWRASCFPAPAMRRADRLFQITQYLRGRRLTTARQLATWLSVSE Sbjct: 1 MHSSIEAGGHCSGGMPEWRASCFPAPAMRRADRLFQITQYLRGRRLTTARQLATWLSVSE 60 Query: 61 RTIYRDIRDLSLSGVPVDGEAGVGYRIKPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQ 120 RTIYRDIRDLSLSGVPVDGEAGVGYRIKPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQ Sbjct: 61 RTIYRDIRDLSLSGVPVDGEAGVGYRIKPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQ 120 Query: 121 LGASAASALAKVVLALPKEKRDFVEATPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLD 180 LGASAASALAKVVLALPKEKRDFVEATPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLD Sbjct: 121 LGASAASALAKVVLALPKEKRDFVEATPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLD 180 Query: 181 YSDAQQRASQRVVWPLALAFFGGTWLLAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGR 240 YSDAQQRASQRVVWPLALAFFGGTWLLAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGR Sbjct: 181 YSDAQQRASQRVVWPLALAFFGGTWLLAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGR 240 Query: 241 RLPDFVRAMQRQVRQARAQGPA 262 RLPDFVRAMQRQVRQARAQGPA Sbjct: 241 RLPDFVRAMQRQVRQARAQGPA 262 >A6T247.1 A6T247_JANMA Transcriptional regulator Length = 229 Score = 319 bits (818), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 164/226 (72%), Positives = 190/226 (84%) Query: 28 MRRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRI 87 MRRA+RLFQI QYLRGRRLTTA QL+ WL VSERTIYRDIRDLSLSGVP++GEAGVGYR+ Sbjct: 1 MRRAERLFQIAQYLRGRRLTTALQLSEWLYVSERTIYRDIRDLSLSGVPIEGEAGVGYRV 60 Query: 88 KPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEAT 147 K G+DL PLMF++DEI+ALV GMRMVQAWGGPQL AS A+ALAK+ LALP+EKRDFVEAT Sbjct: 61 KAGFDLQPLMFSSDEIEALVAGMRMVQAWGGPQLAASGAAALAKITLALPREKRDFVEAT 120 Query: 148 PLFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWLL 207 PLFAP E GERLE IRQAIG ++KL LDY DA+Q+AS R +WPLAL F+G W + Sbjct: 121 PLFAPDFHIEACHGERLENIRQAIGKQNKLRLDYIDAKQQASCRTIWPLALYFWGSGWSI 180 Query: 208 AAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQV 253 AAWCE R DFRSFRLDRVQ +++ G Y +GRRL DFVRAM+R++ Sbjct: 181 AAWCETRSDFRSFRLDRVQALADGGPYAGVSGRRLADFVRAMKREM 226 >B1FWI8.1 B1FWI8_9BURK Helix-turn-helix type 11 domain protein Length = 248 Score = 241 bits (616), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 117/234 (50%), Positives = 162/234 (69%), Gaps = 1/234 (0%) Query: 23 FPAPAM-RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEA 81 + P M RRADRLFQI + LRGRRLTTA+QLA WL++S RT+YRD+RDL LSGVP++GEA Sbjct: 14 YKTPTMTRRADRLFQIAELLRGRRLTTAQQLADWLNISLRTVYRDVRDLQLSGVPIEGEA 73 Query: 82 GVGYRIKPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKR 141 G+GYR+ LPPL F ADE+ AL G RM+++WGG + A ALAK+ A+P +KR Sbjct: 74 GIGYRLSRSASLPPLTFTADELAALAAGARMLESWGGAGFASGARGALAKIASAMPADKR 133 Query: 142 DFVEATPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFF 201 +E +FAP+ + +L+ + +AI +RH + Y+DA A++R VWPLALA++ Sbjct: 134 ASLERLAIFAPSFHIKSDFSTQLDTLHRAIDARHVVSFAYTDANGAATERRVWPLALAYW 193 Query: 202 GGTWLLAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVRQ 255 G W L AWCE R DFR+F L+++QQ+ + YPD+ GRRL D +R + + +Q Sbjct: 194 GARWTLGAWCELRGDFRNFGLEKIQQLEVREPYPDQEGRRLADLLRHVNAKPKQ 247 >B1JVX0.1 B1JVX0_BURCC Helix-turn-helix type 11 domain protein Length = 228 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 115/226 (50%), Positives = 157/226 (69%) Query: 29 RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRIK 88 RRADRLFQI + LRGRRLTTA+QLA WLSVS RT+YRD+RDL LSGVP++GEAG+GYR+ Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLADWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLN 62 Query: 89 PGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEATP 148 LPPL F A+E+ AL G RM++ WGG + +SA SALAK+ A+P +KR ++ P Sbjct: 63 RNASLPPLTFTAEELAALATGARMLETWGGARFASSARSALAKIASAMPADKRTALDRLP 122 Query: 149 LFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWLLA 208 +FAP+ + +++AI QAI +RH + DY D SQR VWPL L ++GG W + Sbjct: 123 VFAPSFHIDETFCAKVDAIHQAIDTRHIVSFDYRDRLGAHSQRRVWPLGLVYWGGRWTIG 182 Query: 209 AWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVR 254 AWCE R+DFR+F + R+ ++ +PD GRR+ D++R + +R Sbjct: 183 AWCELRDDFRTFDIARMGDITVHEQFPDMEGRRIADYMRIAEAPMR 228 >E1T782.1 E1T782_BURSG Helix-turn-helix type 11 domain protein Length = 246 Score = 239 bits (610), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 118/230 (51%), Positives = 160/230 (69%), Gaps = 1/230 (0%) Query: 26 PAM-RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVG 84 P M RRADRLFQI + LRGRRLTTA+QLA WL +S RT+YRD+RDL LSGVP++GEAG+G Sbjct: 17 PTMTRRADRLFQIAELLRGRRLTTAQQLADWLDISLRTVYRDVRDLQLSGVPIEGEAGIG 76 Query: 85 YRIKPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFV 144 YR+ LPPL F ADE+ AL G RM+++WGG + A ALAK+ A+P +KR + Sbjct: 77 YRLSRSASLPPLTFTADELAALAAGARMLESWGGAGFASGARGALAKIASAMPADKRASL 136 Query: 145 EATPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGT 204 E +FAP+ ++L+ + +AI +RH + Y+DA AS+R VWPLALA++G Sbjct: 137 ERLAIFAPSFHIRGDFSDQLDTLHRAIDTRHVVSFAYTDANGAASERRVWPLALAYWGAR 196 Query: 205 WLLAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVR 254 W L AWCE R DFR+F L+++QQ++ + YPD+ GRRL D +R + + R Sbjct: 197 WTLGAWCELRGDFRNFGLEKIQQLAVREPYPDQEGRRLADLLRHVNARPR 246 >Q1BZ20.1 Q1BZ20_BURCA Helix-turn-helix, type 11 Length = 228 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 114/226 (50%), Positives = 155/226 (68%) Query: 29 RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRIK 88 RRADRLFQI + LRGRRLTTA+QLA WLSVS RT+YRD+RDL LSGVP++GEAG+GYR+ Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLADWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLN 62 Query: 89 PGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEATP 148 LPPL F A+E+ AL G RM++ WGG + + A SALAK+ A+P +KR ++ P Sbjct: 63 RNASLPPLTFTAEELAALATGARMLETWGGARFASGARSALAKIASAMPADKRTALDRLP 122 Query: 149 LFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWLLA 208 +FAP+ + +++AI QAI +RH + DY D SQR VWPL L ++GG W + Sbjct: 123 VFAPSFHIDETFCAKVDAIHQAIDTRHIVSFDYRDRLGAHSQRRVWPLGLVYWGGRWTIG 182 Query: 209 AWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVR 254 AWCE R DFR+F + R+ ++ +PD GRR+ D++R + +R Sbjct: 183 AWCELRGDFRTFDIARMGDITVHEQFPDMEGRRIADYMRIAEAPMR 228 >A0K4N1.1 A0K4N1_BURCH Helix-turn-helix, type 11 domain protein Length = 228 Score = 236 bits (601), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 114/226 (50%), Positives = 155/226 (68%) Query: 29 RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRIK 88 RRADRLFQI + LRGRRLTTA+QLA WLSVS RT+YRD+RDL LSGVP++GEAG+GYR+ Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLADWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLN 62 Query: 89 PGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEATP 148 LPPL F A+E+ AL G RM++ WGG + + A SALAK+ A+P +KR ++ P Sbjct: 63 RNASLPPLTFTAEELAALATGARMLETWGGARFASGARSALAKIASAMPADKRTALDRLP 122 Query: 149 LFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWLLA 208 +FAP+ + +++AI QAI +RH + DY D SQR VWPL L ++GG W + Sbjct: 123 VFAPSFHIDETFCAKVDAIHQAIDTRHIVSFDYRDRLGAHSQRRVWPLGLVYWGGRWTIG 182 Query: 209 AWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVR 254 AWCE R DFR+F + R+ ++ +PD GRR+ D++R + +R Sbjct: 183 AWCELRGDFRTFDIARMGDITVHEQFPDMEGRRIADYMRIAEAPMR 228 >A4JBM6.1 A4JBM6_BURVG Helix-turn-helix, type 11 domain protein Length = 228 Score = 234 bits (596), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 111/222 (50%), Positives = 154/222 (69%) Query: 29 RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRIK 88 RRADRLFQI + LRGRRLTTA+QLA WLSVS RT+YRD+RDL LSGVP++GEAG+GYR+ Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLADWLSVSPRTVYRDVRDLQLSGVPIEGEAGIGYRLN 62 Query: 89 PGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEATP 148 LPPL F A+E+ AL +G RM++ WGG + A SALAK+ A+P +KR ++ P Sbjct: 63 RNASLPPLTFTAEELAALAVGARMLETWGGARFAGGARSALAKIASAMPADKRTALDRLP 122 Query: 149 LFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWLLA 208 +FAP+ + +++AI QA+ +RH + DY D ++R VWPL L ++GG W + Sbjct: 123 VFAPSFHIDETFCAKVDAIHQAVDTRHIVSFDYRDRLGAHTKRRVWPLGLVYWGGRWTIG 182 Query: 209 AWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQ 250 AWCE R+DFR+F + R+ ++ +PD GRR+ D++R Q Sbjct: 183 AWCELRDDFRTFDIARMGDITLHEPFPDVEGRRIADYMRIAQ 224 >F2L7R2.1 F2L7R2_BURGA Helix-turn-helix, type 11 Length = 242 Score = 233 bits (595), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 112/224 (50%), Positives = 155/224 (69%) Query: 29 RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEAGVGYRIK 88 RRADRLFQI + LRGRRLTTA+QLA W+SVS RT+YRD+RDL LSGVP++GEAG+GYR+ Sbjct: 3 RRADRLFQIAELLRGRRLTTAQQLAQWMSVSLRTVYRDVRDLQLSGVPIEGEAGIGYRLD 62 Query: 89 PGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKRDFVEATP 148 LPPL F ADE+ AL G RM+++WGG + A SALAK+ A+P +KR ++ P Sbjct: 63 RSASLPPLTFTADELAALAAGARMLESWGGARFAGGARSALAKIASAMPADKRIVLDRLP 122 Query: 149 LFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFFGGTWLLA 208 +FAP+ + + ++ + +A+ R + Y D Q AS+R +WPL L ++GG W L+ Sbjct: 123 VFAPSQRVDATYSQTMDVLHRALDERRVVHFQYRDKQDAASERRIWPLGLVYWGGQWTLS 182 Query: 209 AWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQ 252 AWCE R DFR+F + R+++ S +PD +GRRL DF+R R+ Sbjct: 183 AWCELRGDFRNFDVVRIREPSVHEVHPDLDGRRLADFLRIAHRE 226 >B5WW07.1 B5WW07_9BURK Helix-turn-helix type 11 domain protein Length = 247 Score = 233 bits (594), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 114/234 (48%), Positives = 159/234 (67%), Gaps = 1/234 (0%) Query: 23 FPAPAM-RRADRLFQITQYLRGRRLTTARQLATWLSVSERTIYRDIRDLSLSGVPVDGEA 81 +P P M RRADRLFQI + LRGRRLTTA+QLA WL++S RT+YRD+RDL LSGVP++GEA Sbjct: 14 YPTPTMTRRADRLFQIAELLRGRRLTTAQQLADWLNISLRTVYRDVRDLQLSGVPIEGEA 73 Query: 82 GVGYRIKPGYDLPPLMFNADEIDALVIGMRMVQAWGGPQLGASAASALAKVVLALPKEKR 141 G+GYR+ LPPL F ADE+ AL G RM+++WGG + A ALAK+ A+P +KR Sbjct: 74 GIGYRLSRSASLPPLTFTADELAALAAGARMLESWGGAGFASGARGALAKIASAMPADKR 133 Query: 142 DFVEATPLFAPAVPDECGQGERLEAIRQAIGSRHKLLLDYSDAQQRASQRVVWPLALAFF 201 +E +FAP+ + +L+ + +AI +R + Y+DA ++R VWPLALA++ Sbjct: 134 AALERLAIFAPSFHIKGDFSTQLDTLHRAIDTRQVVHFAYTDANGADTERRVWPLALAYW 193 Query: 202 GGTWLLAAWCEAREDFRSFRLDRVQQMSEQGHYPDRNGRRLPDFVRAMQRQVRQ 255 G W L AWCE R DFR+F L++++ + YPD+ GRRL D +R + + R+ Sbjct: 194 GARWTLGAWCELRGDFRNFGLEKMRDLKVLETYPDQEGRRLADLLRHLNAKPRR 247