BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0020.p (70 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IXE9.1 D8IXE9_HERSS Cold-shock transcription regulator protein 143 1e-32 C4ZJQ4.1 C4ZJQ4_THASP Cold-shock DNA-binding domain protein 103 7e-21 A6SY61.1 A6SY61_JANMA Cold shock transcription regulator protein 102 2e-20 A4G5Y5.1 A4G5Y5_HERAR Cold shock-like protein cspE (CSP-E) 102 2e-20 F1VWC8.1 F1VWC8_9BURK Cold shock protein CspA 102 2e-20 C3X4W2.1 C3X4W2_OXAFO Cold-shock DNA-binding family protein 101 3e-20 A1K7D3.1 A1K7D3_AZOSB Cold shock-like protein 101 4e-20 F1DLK3.1 F1DLK3_9BURK Cold shock-like protein CspD 101 4e-20 A1X1M1.1 A1X1M1_9BURK Cold shock transcription regulator 101 4e-20 Q3SKY9.1 Q3SKY9_THIDA Possible Cold-shock DNA-binding domain pro... 100 5e-20 >D8IXE9.1 D8IXE9_HERSS Cold-shock transcription regulator protein Length = 70 Score = 143 bits (360), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 70/70 (100%), Positives = 70/70 (100%) Query: 1 MSSQTGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKG 60 MSSQTGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKG Sbjct: 1 MSSQTGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKG 60 Query: 61 EKATNIKVIA 70 EKATNIKVIA Sbjct: 61 EKATNIKVIA 70 >C4ZJQ4.1 C4ZJQ4_THASP Cold-shock DNA-binding domain protein Length = 69 Score = 103 bits (258), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 47/69 (68%), Positives = 57/69 (82%) Query: 1 MSSQTGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKG 60 MS+QTG VKWFNDAKGFGFITP+ GG D+FAHF +IQS GF+SL+ENQRV F+ GPKG Sbjct: 1 MSTQTGTVKWFNDAKGFGFITPEGGGDDLFAHFSEIQSKGFKSLAENQRVEFEVKTGPKG 60 Query: 61 EKATNIKVI 69 +A NI+ + Sbjct: 61 LQAANIRPL 69 >A6SY61.1 A6SY61_JANMA Cold shock transcription regulator protein Length = 67 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 46/65 (70%), Positives = 56/65 (86%) Query: 5 TGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGEKAT 64 TG+VKWFND+KGFGFITPD GG D+FAHF IQS+GF+SL ENQRVSF+ GPKG++A+ Sbjct: 3 TGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPKGKQAS 62 Query: 65 NIKVI 69 NI+ I Sbjct: 63 NIQPI 67 >A4G5Y5.1 A4G5Y5_HERAR Cold shock-like protein cspE (CSP-E) Length = 67 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 46/65 (70%), Positives = 56/65 (86%) Query: 5 TGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGEKAT 64 TG+VKWFND+KGFGFITPD GG D+FAHF IQS+GF+SL ENQRVSF+ GPKG++A+ Sbjct: 3 TGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPKGKQAS 62 Query: 65 NIKVI 69 NI+ I Sbjct: 63 NIQPI 67 >F1VWC8.1 F1VWC8_9BURK Cold shock protein CspA Length = 67 Score = 102 bits (253), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 46/65 (70%), Positives = 56/65 (86%) Query: 5 TGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGEKAT 64 TG+VKWFND+KGFGFITPD GG D+FAHF IQS+GF+SL ENQRVSF+ GPKG++A+ Sbjct: 3 TGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSSGFKSLQENQRVSFEVTAGPKGKQAS 62 Query: 65 NIKVI 69 NI+ I Sbjct: 63 NIQPI 67 >C3X4W2.1 C3X4W2_OXAFO Cold-shock DNA-binding family protein Length = 67 Score = 101 bits (252), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 48/65 (73%), Positives = 53/65 (81%) Query: 5 TGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGEKAT 64 TG VKWFND+KGFGFITPD GG DVFAHF I S GF+SL ENQRVSFD GPKG++A+ Sbjct: 3 TGTVKWFNDSKGFGFITPDEGGEDVFAHFSAINSEGFKSLKENQRVSFDITTGPKGKQAS 62 Query: 65 NIKVI 69 NI VI Sbjct: 63 NITVI 67 >A1K7D3.1 A1K7D3_AZOSB Cold shock-like protein Length = 69 Score = 101 bits (252), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 46/69 (66%), Positives = 57/69 (82%) Query: 1 MSSQTGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKG 60 MS+QTG VKWFNDAKGFGFITP+ GG D+FAHF +IQS+GF+SL+ENQRV F+ GPKG Sbjct: 1 MSTQTGTVKWFNDAKGFGFITPENGGDDLFAHFSEIQSSGFKSLAENQRVEFEVKSGPKG 60 Query: 61 EKATNIKVI 69 +A I+ + Sbjct: 61 LQAAKIRPL 69 >F1DLK3.1 F1DLK3_9BURK Cold shock-like protein CspD Length = 67 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 46/65 (70%), Positives = 55/65 (84%) Query: 5 TGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGEKAT 64 TG+VKWFND+KGFGFITPD GG D+FAHF IQS GF+SL ENQRVSF+ GPKG++A+ Sbjct: 3 TGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLQENQRVSFEVTAGPKGKQAS 62 Query: 65 NIKVI 69 NI+ I Sbjct: 63 NIQPI 67 >A1X1M1.1 A1X1M1_9BURK Cold shock transcription regulator Length = 67 Score = 101 bits (251), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 46/65 (70%), Positives = 55/65 (84%) Query: 5 TGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGEKAT 64 TG+VKWFND+KGFGFITPD GG D+FAHF IQS GF+SL ENQRVSF+ GPKG++A+ Sbjct: 3 TGIVKWFNDSKGFGFITPDEGGEDLFAHFSAIQSNGFKSLQENQRVSFEVTAGPKGKQAS 62 Query: 65 NIKVI 69 NI+ I Sbjct: 63 NIQPI 67 >Q3SKY9.1 Q3SKY9_THIDA Possible Cold-shock DNA-binding domain protein Length = 68 Score = 100 bits (250), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 45/67 (67%), Positives = 56/67 (83%) Query: 4 QTGVVKWFNDAKGFGFITPDAGGADVFAHFQDIQSTGFRSLSENQRVSFDRGVGPKGEKA 63 +TG VKWFNDAKGFGFITPD GG D+FAHF I + GF+SL ENQRVSF+ GPKG++A Sbjct: 2 ETGTVKWFNDAKGFGFITPDNGGEDLFAHFSAINANGFKSLQENQRVSFEVTTGPKGKQA 61 Query: 64 TNIKVIA 70 +NI+V++ Sbjct: 62 SNIQVVS 68