BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0008.p (209 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IXD4.1 D8IXD4_HERSS TetR family transcription regulator protein 419 e-116 F1W0T2.1 F1W0T2_9BURK Transcriptional regulator, TetR family 236 1e-60 A0SZ06.1 A0SZ06_9BURK Putative tetR family regulatory protein 231 5e-59 E2SY66.1 E2SY66_9RALS Transcriptional regulator, TetR family 230 9e-59 B2U7D7.1 B2U7D7_RALPJ Transcriptional regulator, TetR family 229 1e-58 B3R5W2.1 B3R5W2_CUPTR Putative TRANSCRIPTIONal REGULATOR PROTEIN... 229 2e-58 C6BDH7.1 C6BDH7_RALP1 Transcriptional regulator, TetR family 229 2e-58 Q0K7S1.1 Q0K7S1_CUPNH Transcriptional regulator, TetR/AcrR-family 227 9e-58 D8N715.1 D8N715_RALSO Putative transcriptional regulator protein... 226 1e-57 D8NXI4.1 D8NXI4_RALSO Putative transcriptional regulator protein... 226 1e-57 >D8IXD4.1 D8IXD4_HERSS TetR family transcription regulator protein Length = 209 Score = 419 bits (1078), Expect = e-116, Method: Compositional matrix adjust. Identities = 208/209 (99%), Positives = 208/209 (99%) Query: 1 MSASAKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSK 60 MSASAKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSK Sbjct: 1 MSASAKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSK 60 Query: 61 ESLFKSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAE 120 ESLFKSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAE Sbjct: 61 ESLFKSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAE 120 Query: 121 SGNFPELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQ 180 SGNFPELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQ Sbjct: 121 SGNFPELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQ 180 Query: 181 SLAPCAIAPIDSDAYLASLIDLCVHGLKA 209 SLAPCAIAPIDS AYLASLIDLCVHGLKA Sbjct: 181 SLAPCAIAPIDSAAYLASLIDLCVHGLKA 209 >F1W0T2.1 F1W0T2_9BURK Transcriptional regulator, TetR family Length = 222 Score = 236 bits (603), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 121/201 (60%), Positives = 152/201 (75%), Gaps = 1/201 (0%) Query: 8 PRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKSV 67 PRW RRK+ RPQELL AAL LFVERG++ATRL+DVA AGVSKGTLYLY+ SKE LFK+V Sbjct: 10 PRWTRRKEARPQELLDAALALFVERGFSATRLDDVARIAGVSKGTLYLYYASKEELFKAV 69 Query: 68 VRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPEL 127 VR +++PLL EAEA + H G +A LLR+++LGWW+ + L GI KL++AE+ NFPEL Sbjct: 70 VRENVVPLLGEAEAMIRDHAGSSALLLRQILLGWWERIGETRLSGITKLVMAEARNFPEL 129 Query: 128 ARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSL-APCA 186 A+FY+EE+ RG+A L +VLERG+A GEFRPLD VIAAPIMM+M+W S +PCA Sbjct: 130 AKFYNEEVILRGNAMLAQVLERGVASGEFRPLDITQATSVIAAPIMMMMMWKHSFGSPCA 189 Query: 187 IAPIDSDAYLASLIDLCVHGL 207 + I AYL + DL + GL Sbjct: 190 LPTITPQAYLHGVTDLLLQGL 210 >A0SZ06.1 A0SZ06_9BURK Putative tetR family regulatory protein Length = 216 Score = 231 bits (589), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 108/203 (53%), Positives = 152/203 (74%) Query: 7 EPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKS 66 +PRWERRK RPQELLAAAL LFVERG+A+TRLEDVA +AGVSKGTLYLYF++K+ LFK+ Sbjct: 8 KPRWERRKDARPQELLAAALDLFVERGFASTRLEDVAKRAGVSKGTLYLYFENKQELFKA 67 Query: 67 VVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPE 126 VVR +++ + EAE + + D +A+LLR++++ WW+ + L G+ KLMLAE+ NFPE Sbjct: 68 VVRDNIVQSIGEAEDSMAASDSSSAELLRKVMMQWWEEFGATKLAGLTKLMLAEANNFPE 127 Query: 127 LARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAPCA 186 LA+FY+EE+ +RG+ +V +LERGM RGEFR +D + +++AP+ MLM+W S PC Sbjct: 128 LAQFYNEEVVTRGNGLIVSLLERGMQRGEFRQVDPVLVSTILSAPVTMLMMWTHSFLPCE 187 Query: 187 IAPIDSDAYLASLIDLCVHGLKA 209 + ID AY+ + ID+ + L+ Sbjct: 188 VKNIDPLAYMDAFIDMSLRSLQV 210 >E2SY66.1 E2SY66_9RALS Transcriptional regulator, TetR family Length = 255 Score = 230 bits (587), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 106/199 (53%), Positives = 145/199 (72%) Query: 9 RWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKSVV 68 RW RRK+ RPQEL+AAAL LFV RGYAATRLEDVA+ AGVSKGT+YLYF +KE LFK+VV Sbjct: 20 RWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEELFKAVV 79 Query: 69 RAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPELA 128 + +++P L E EA +DS DG + LL E+++GWW+ S G+ KL++AESGNFP+LA Sbjct: 80 QENLVPALAEGEALIDSFDGTSEALLHEILIGWWELIGESPASGLTKLLMAESGNFPDLA 139 Query: 129 RFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAPCAIA 188 ++YHEE+ R D R+LERGMARGEFR ++ + AP++ LM+W S PC+ Sbjct: 140 QYYHEEVIDRCDRLFARILERGMARGEFRDVNIDLTTLTMVAPMIFLMMWKHSFGPCSHR 199 Query: 189 PIDSDAYLASLIDLCVHGL 207 ++ A++A ++ L +HG+ Sbjct: 200 ELEPKAFIAHVVSLLLHGV 218 >B2U7D7.1 B2U7D7_RALPJ Transcriptional regulator, TetR family Length = 247 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 105/199 (52%), Positives = 144/199 (72%) Query: 9 RWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKSVV 68 RW RRK+ RPQEL+AAAL LFV RGYAATRLEDVA+ AGVSKGT+YLYF +KE LFK+VV Sbjct: 12 RWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEELFKAVV 71 Query: 69 RAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPELA 128 + +++P L E EA +DS DG + LL E+++GWW+ S G+ KL++AESGNFP+LA Sbjct: 72 QENLVPALAEGEALIDSFDGTSEALLHEILMGWWELIGESPASGLTKLLMAESGNFPDLA 131 Query: 129 RFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAPCAIA 188 ++YHEE+ R D R+LERGMARGEFR ++ + AP++ LM+W S PC+ Sbjct: 132 QYYHEEVIERCDRLFARILERGMARGEFRDVNIDLTTLTMVAPMIFLMMWKHSFGPCSHR 191 Query: 189 PIDSDAYLASLIDLCVHGL 207 ++ A++ ++ L +HG+ Sbjct: 192 ELEPKAFITHVVSLLLHGV 210 >B3R5W2.1 B3R5W2_CUPTR Putative TRANSCRIPTIONal REGULATOR PROTEIN, TetR/AcrR-family Length = 274 Score = 229 bits (584), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 113/205 (55%), Positives = 146/205 (71%) Query: 5 AKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLF 64 A PRW RRK RPQEL+AAAL LFVERGYAATRLEDVAA AGVSKGT+YLYF +KE LF Sbjct: 21 ADSPRWSRRKAARPQELVAAALDLFVERGYAATRLEDVAAAAGVSKGTVYLYFANKEELF 80 Query: 65 KSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNF 124 KSVVR +++P L VD++ G T +LLREL+ GWW + + G+ KL++AES NF Sbjct: 81 KSVVRENLVPALARGADLVDAYQGSTPELLRELLRGWWGLIGATPVAGLTKLIMAESANF 140 Query: 125 PELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAP 184 P++ARFY++E+ GD +VL RG+ARGEFRPL A+ +I AP++ LM+W ++L Sbjct: 141 PDIARFYNQEVMVPGDELFAKVLARGVARGEFRPLPANPTTTLICAPLVFLMMWQRALRA 200 Query: 185 CAIAPIDSDAYLASLIDLCVHGLKA 209 A ID +A+L L+D + GL A Sbjct: 201 TAEKDIDPEAFLDGLLDTLLFGLTA 225 >C6BDH7.1 C6BDH7_RALP1 Transcriptional regulator, TetR family Length = 255 Score = 229 bits (583), Expect = 2e-58, Method: Compositional matrix adjust. Identities = 105/199 (52%), Positives = 144/199 (72%) Query: 9 RWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKSVV 68 RW RRK+ RPQEL+AAAL LFV RGYAATRLEDVA+ AGVSKGT+YLYF +KE LFK+VV Sbjct: 20 RWTRRKEARPQELVAAALNLFVARGYAATRLEDVASAAGVSKGTVYLYFANKEELFKAVV 79 Query: 69 RAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPELA 128 + +++P L E EA +DS DG + LL E+++GWW+ S G+ KL++AESGNFP+LA Sbjct: 80 QENLVPALAEGEALIDSFDGTSEALLHEILMGWWELIGESPASGLTKLLMAESGNFPDLA 139 Query: 129 RFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAPCAIA 188 ++YHEE+ R D R+LERGMARGEFR ++ + AP++ LM+W S PC+ Sbjct: 140 QYYHEEVIDRCDRLFARILERGMARGEFRDVNIDLTTLTMVAPMIFLMMWKHSFGPCSHR 199 Query: 189 PIDSDAYLASLIDLCVHGL 207 ++ ++A ++ L +HG+ Sbjct: 200 ELEPKTFIAHVVSLLLHGV 218 >Q0K7S1.1 Q0K7S1_CUPNH Transcriptional regulator, TetR/AcrR-family Length = 271 Score = 227 bits (578), Expect = 9e-58, Method: Compositional matrix adjust. Identities = 111/203 (54%), Positives = 145/203 (71%) Query: 5 AKEPRWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLF 64 A PRW RRK RPQEL+AAAL LFVERGYAATRLEDVAA AGVSKGT+YLYF +KE LF Sbjct: 20 ADTPRWSRRKAARPQELVAAALDLFVERGYAATRLEDVAAAAGVSKGTVYLYFANKEELF 79 Query: 65 KSVVRAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNF 124 KSVVR +++P L VD++DG T +LLREL+ GWW + + G+ KL++AES NF Sbjct: 80 KSVVRENLVPALARGSDLVDAYDGSTPELLRELLRGWWGLIGATPVAGLTKLIMAESANF 139 Query: 125 PELARFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAP 184 P++ARFY++E+ GD +VL RG+ARGEFR + A+ ++ AP++ LMLW ++L Sbjct: 140 PDIARFYNQEVMMPGDELFAKVLARGVARGEFRAMPANPTTTLVCAPLVFLMLWQRALRA 199 Query: 185 CAIAPIDSDAYLASLIDLCVHGL 207 A ID +A+L L+D + GL Sbjct: 200 TAEKDIDPEAFLDGLLDTLLFGL 222 >D8N715.1 D8N715_RALSO Putative transcriptional regulator protein, TetR/AcrR-family Length = 264 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 104/199 (52%), Positives = 144/199 (72%) Query: 9 RWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKSVV 68 RW RRK+ RPQEL+AAA+ LFV RG+AATRLEDVAA AGVSKGT+YLYF +K LFK+VV Sbjct: 29 RWTRRKEARPQELVAAAMSLFVARGFAATRLEDVAAAAGVSKGTVYLYFANKVELFKAVV 88 Query: 69 RAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPELA 128 + ++LP+L E EA +D+ +G + LL E+++GWW+ S + G+ KL++AE+GNFP+LA Sbjct: 89 QENLLPVLAEGEALIDTFEGSSEALLHEILMGWWEMIGESPVSGLTKLLMAEAGNFPDLA 148 Query: 129 RFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAPCAIA 188 ++YHE + R D +R+LERGMARGEFR D + AP++ L +W S PC+ Sbjct: 149 QYYHEAVIQRCDRLFMRILERGMARGEFRQTDIDMTTLALIAPMLFLTMWKHSFGPCSHR 208 Query: 189 PIDSDAYLASLIDLCVHGL 207 +D A++A L+ L +HGL Sbjct: 209 ELDPKAFIAHLVTLMLHGL 227 >D8NXI4.1 D8NXI4_RALSO Putative transcriptional regulator protein, TetR/AcrR-family Length = 250 Score = 226 bits (577), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 104/199 (52%), Positives = 143/199 (71%) Query: 9 RWERRKQDRPQELLAAALQLFVERGYAATRLEDVAAQAGVSKGTLYLYFDSKESLFKSVV 68 RW RRK+ RPQEL+AAAL LFV RG+AATRLEDVA AGVSKGT+YLYF +K LFK+VV Sbjct: 15 RWTRRKEARPQELVAAALSLFVARGFAATRLEDVATAAGVSKGTVYLYFANKVELFKAVV 74 Query: 69 RAHMLPLLDEAEARVDSHDGHTADLLRELILGWWQGASRSGLKGIAKLMLAESGNFPELA 128 + ++LP+L E EA +D+ +G + LL E+++GWW+ S + G+ KL++AE+GNFP+LA Sbjct: 75 QENLLPVLAEGEALIDTFEGTSEALLHEILMGWWEMIGESPVSGLTKLLMAEAGNFPDLA 134 Query: 129 RFYHEEITSRGDATLVRVLERGMARGEFRPLDAHALKKVIAAPIMMLMLWDQSLAPCAIA 188 ++YHE + R + R+LERGMARGEFR D + AP++ LM+W S PC+ Sbjct: 135 QYYHEAVIQRCNRLFTRILERGMARGEFRETDVDMTTLALIAPMLFLMMWKHSFGPCSHR 194 Query: 189 PIDSDAYLASLIDLCVHGL 207 +D A++A L+ L +HGL Sbjct: 195 ELDPKAFIAHLVALMLHGL 213