BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0011.0004.p (211 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IXD0.1 D8IXD0_HERSS Transcription regulator protein 435 e-120 A6T278.1 A6T278_JANMA TetR/AcrR family transcriptional regulator... 258 4e-67 F1VXM1.1 F1VXM1_9BURK Transcription repressor of multidrug efflu... 225 3e-57 C6BIL2.1 C6BIL2_RALP1 Transcriptional regulator, TetR family 224 5e-57 B2U809.1 B2U809_RALPJ Transcriptional regulator, TetR family 223 1e-56 E2SWJ8.1 E2SWJ8_9RALS Multidrug efflux pump repressor protein BpeR 223 1e-56 Q8Y3G8.1 Q8Y3G8_RALSO Putative acrab operon repressor transcript... 219 2e-55 D8NAW1.1 D8NAW1_RALSO Transcriptional repressor for acridine eff... 219 2e-55 D8P1B3.1 D8P1B3_RALSO Transcriptional repressor for acridine eff... 219 2e-55 B3R853.1 B3R853_CUPTR Transcriptional repressor for acridine eff... 219 2e-55 >D8IXD0.1 D8IXD0_HERSS Transcription regulator protein Length = 211 Score = 435 bits (1118), Expect = e-120, Method: Compositional matrix adjust. Identities = 211/211 (100%), Positives = 211/211 (100%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD Sbjct: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA Sbjct: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF Sbjct: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 Query: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQRR 211 SPDSFDLVSEGERVLAASMHALKTAPSLQRR Sbjct: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQRR 211 >A6T278.1 A6T278_JANMA TetR/AcrR family transcriptional regulator, acrAB operon repressor Length = 213 Score = 258 bits (659), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 127/211 (60%), Positives = 155/211 (73%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 MARSTKEEALETR+RILDAAE+VF RG++Q+SLADVA AA+VTRGAIYWHFKNKSDLF+ Sbjct: 1 MARSTKEEALETRNRILDAAEEVFFTRGLAQSSLADVAVAADVTRGAIYWHFKNKSDLFE 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERVRLPME ++ V DPLG + +++L + R RRV DIIF KCE Sbjct: 61 AMCERVRLPMETMMTTPGEKFVRDPLGHLRHTWIWLLRDVVDNPRSRRVLDIIFLKCELV 120 Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 D +DPI +RQRECH +G+ + IL AVA GQLPA LD +LA L H++ GLLTDW F Sbjct: 121 DHNDPIWVRQRECHREGLENMRSILEEAVAMGQLPADLDTQLAVLSLHSSLVGLLTDWLF 180 Query: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQRR 211 SPDSFDL E ++ A + L+ APSL+R+ Sbjct: 181 SPDSFDLKEVVEPLVDACLDGLRNAPSLRRK 211 >F1VXM1.1 F1VXM1_9BURK Transcription repressor of multidrug efflux pump acrAB operon Length = 225 Score = 225 bits (574), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 116/210 (55%), Positives = 149/210 (70%), Gaps = 2/210 (0%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M+RSTKEEALETRSRILDAAE VFH GV++TSLADVA AA VTRGAIYWHFKNK DLF+ Sbjct: 15 MSRSTKEEALETRSRILDAAENVFHAHGVTRTSLADVATAANVTRGAIYWHFKNKGDLFN 74 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGV-YVLTMAATDERCRRVFDIIFNKCEF 119 AMCER LP+EA++ ++A +PL Q LR+G+ + + + + RRVF++IF+KCE Sbjct: 75 AMCERAHLPLEAMVLQSADHPDREPLDQ-LRAGILFAINDIVHNPQTRRVFEVIFHKCEL 133 Query: 120 ADAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWF 179 D DPI +RQ E D M +E++L A A+GQLPATLD +LA + HA GL+ +W Sbjct: 134 VDVDDPIRVRQHEGFNDCMHNIERLLILACAQGQLPATLDTQLATVSLHAMLEGLINNWL 193 Query: 180 FSPDSFDLVSEGERVLAASMHALKTAPSLQ 209 F+P SFDL + R+L A L+ A SL+ Sbjct: 194 FAPQSFDLGGQSGRLLDACFDMLRCAESLR 223 >C6BIL2.1 C6BIL2_RALP1 Transcriptional regulator, TetR family Length = 223 Score = 224 bits (571), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 113/209 (54%), Positives = 147/209 (70%), Gaps = 1/209 (0%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR+RILDAAE VF+ RGV++TSL+D+A+AA VTRGAIYWHF+NK+D+F Sbjct: 1 MVRRTKEEALETRNRILDAAEDVFYARGVARTSLSDIAQAAGVTRGAIYWHFRNKTDVFA 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERV+LPME + + +DPLG+ G ++L D R+VF+I+FNKCEF Sbjct: 61 AMCERVKLPMETMCTPLGM-EADDPLGELRTVGNFLLRQLVEDAHWRKVFEIMFNKCEFV 119 Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 + PIL RQ+E +GM L I+ A RGQLPA LDI LA HATF+G++ D+ F Sbjct: 120 EDTSPILKRQQESFEEGMTHLTSIIEQATRRGQLPADLDIPLAVAHFHATFNGIMGDYLF 179 Query: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQ 209 PD+ L ++ ER+L A + LK APSL+ Sbjct: 180 YPDASSLATKRERLLDACIDTLKYAPSLR 208 >B2U809.1 B2U809_RALPJ Transcriptional regulator, TetR family Length = 223 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/209 (54%), Positives = 146/209 (69%), Gaps = 1/209 (0%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR+RILDAAE VF+ RGV++TSL+D+A+AA VTRGAIYWHF+NK+D+F Sbjct: 1 MVRRTKEEALETRNRILDAAEDVFYARGVARTSLSDIAQAAGVTRGAIYWHFRNKADVFA 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERV+LPME + + +DPLG+ G ++L D R+VF+I+FNKCEF Sbjct: 61 AMCERVKLPMETMCTP-LGVEADDPLGELRTVGNFLLRQLVEDAHWRKVFEIMFNKCEFV 119 Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 + PIL RQ+E +GM L I+ A RGQLPA LDI LA HATF+G++ D+ F Sbjct: 120 EDTSPILKRQQESFEEGMAHLTSIIEQATRRGQLPADLDIPLAVAHFHATFNGIMGDYLF 179 Query: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQ 209 PD L ++ ER+L A + LK APSL+ Sbjct: 180 YPDVSSLATKRERLLDACIDTLKYAPSLR 208 >E2SWJ8.1 E2SWJ8_9RALS Multidrug efflux pump repressor protein BpeR Length = 223 Score = 223 bits (568), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 113/209 (54%), Positives = 146/209 (69%), Gaps = 1/209 (0%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR+RILDAAE VF+ RGV++TSL+D+A+AA VTRGAIYWHF+NK+D+F Sbjct: 1 MVRRTKEEALETRNRILDAAEDVFYARGVARTSLSDIAQAAGVTRGAIYWHFRNKADVFA 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 AMCERV+LPME + + +DPLG+ G ++L D R+VF+I+FNKCEF Sbjct: 61 AMCERVKLPMETMCTP-LGVEADDPLGELRTVGNFLLRQLVEDAHWRKVFEIMFNKCEFV 119 Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 + PIL RQ+E +GM L I+ A RGQLPA LDI LA HATF+G++ D+ F Sbjct: 120 EDTSPILKRQQESFEEGMAHLTSIIEQATRRGQLPADLDIPLAVAHFHATFNGIMGDYLF 179 Query: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQ 209 PD L ++ ER+L A + LK APSL+ Sbjct: 180 YPDVSSLATKRERLLDACIDTLKYAPSLR 208 >Q8Y3G8.1 Q8Y3G8_RALSO Putative acrab operon repressor transcription regulator protein Length = 219 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/212 (52%), Positives = 146/212 (68%), Gaps = 7/212 (3%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR+RILDAAE+VF+ RGV++TSL+D+A+AA VTRGAIYWHF+NK+D+F Sbjct: 1 MVRRTKEEALETRNRILDAAEEVFYVRGVARTSLSDIAQAAGVTRGAIYWHFRNKADVFA 60 Query: 61 AMCERVRLPMEAVLEENASP---QVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKC 117 AMCERV+LPME + SP + DPLG+ +VL D RRVF+I+FNKC Sbjct: 61 AMCERVKLPMETL----CSPLGVEPNDPLGELRNVANFVLQQLVEDMHWRRVFEIMFNKC 116 Query: 118 EFADAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTD 177 EF + PIL RQ+E +G+ RL I+G A RGQLP LD+ LA HA+F G++ D Sbjct: 117 EFVEDTSPILKRQQESFEEGLARLTHIIGQAARRGQLPPDLDVPLAVAHFHASFGGIMGD 176 Query: 178 WFFSPDSFDLVSEGERVLAASMHALKTAPSLQ 209 + F PD+ L + ER + A + LK +P+L+ Sbjct: 177 YLFYPDASSLAVKRERFVDACIDTLKYSPALR 208 >D8NAW1.1 D8NAW1_RALSO Transcriptional repressor for acridine efflux pump ACRAB, multidrug efflux system repressor (TetR/AcrR family) Length = 219 Score = 219 bits (558), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/212 (52%), Positives = 146/212 (68%), Gaps = 7/212 (3%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR+RILDAAE+VF+ RGV++TSL+D+A+AA VTRGAIYWHF+NK+D+F Sbjct: 1 MVRRTKEEALETRNRILDAAEEVFYVRGVARTSLSDIAQAAGVTRGAIYWHFRNKADVFA 60 Query: 61 AMCERVRLPMEAVLEENASP---QVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKC 117 AMCERV+LPME + SP + DPLG+ +VL D RRVF+I+FNKC Sbjct: 61 AMCERVKLPMETL----CSPLGVEPNDPLGELRNVANFVLQQLVEDMHWRRVFEIMFNKC 116 Query: 118 EFADAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTD 177 EF + PIL RQ+E +G+ RL I+G A RGQLP LD+ LA HA+F G++ D Sbjct: 117 EFVEDTSPILKRQQESFEEGLARLTHIIGQAARRGQLPPDLDVPLAVAHFHASFGGIMGD 176 Query: 178 WFFSPDSFDLVSEGERVLAASMHALKTAPSLQ 209 + F PD+ L + ER + A + LK +P+L+ Sbjct: 177 YLFYPDASSLAVKRERFVDACIDTLKYSPALR 208 >D8P1B3.1 D8P1B3_RALSO Transcriptional repressor for acridine efflux pump ACRAB, multidrug efflux system repressor (TetR/AcrR family) Length = 219 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 111/212 (52%), Positives = 146/212 (68%), Gaps = 7/212 (3%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR+RILDAAE+VF+ RGV++TSL+D+A+AA VTRGAIYWHF+NK+D+F Sbjct: 1 MVRRTKEEALETRNRILDAAEEVFYARGVARTSLSDIAQAAGVTRGAIYWHFRNKADVFA 60 Query: 61 AMCERVRLPMEAVLEENASP---QVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKC 117 AMCERV+LPME + SP + DPLG+ +VL D RRVF+I+FNKC Sbjct: 61 AMCERVKLPMETL----CSPLGVEPNDPLGELRNVANFVLQQLVEDMHWRRVFEIMFNKC 116 Query: 118 EFADAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTD 177 EF + PIL RQ+E +G+ RL I+G A RGQLP LD+ LA HA+F G++ D Sbjct: 117 EFVEDTSPILKRQQESFEEGLGRLTHIIGQAARRGQLPPDLDVPLAVAHFHASFGGIMGD 176 Query: 178 WFFSPDSFDLVSEGERVLAASMHALKTAPSLQ 209 + F PD+ L + ER + A + LK +P+L+ Sbjct: 177 YLFYPDASSLAVKRERFVDACIDTLKYSPALR 208 >B3R853.1 B3R853_CUPTR Transcriptional repressor for acridine efflux pump ACRAB, multidrug efflux system repressor (TetR/AcrR family) Length = 247 Score = 219 bits (557), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 112/209 (53%), Positives = 142/209 (67%) Query: 1 MARSTKEEALETRSRILDAAEQVFHERGVSQTSLADVAKAAEVTRGAIYWHFKNKSDLFD 60 M R TKEEALETR RILDAAE VFH RGV++ SLAD+A+AA VTRGAIYWHFKNKSD+F Sbjct: 1 MVRRTKEEALETRHRILDAAEAVFHARGVARPSLADIAEAAGVTRGAIYWHFKNKSDVFA 60 Query: 61 AMCERVRLPMEAVLEENASPQVEDPLGQFLRSGVYVLTMAATDERCRRVFDIIFNKCEFA 120 AMC+RV LP+EA++E + EDPLG YV+ + R RRVF+IIF+KCE Sbjct: 61 AMCDRVHLPVEALIEPERLARQEDPLGGIRDICAYVMRQTVINPRWRRVFEIIFHKCEMV 120 Query: 121 DAHDPILIRQRECHVDGMLRLEQILGNAVARGQLPATLDIRLACLMTHATFSGLLTDWFF 180 + I RQR+ H DG++++ + L AV RGQLPA LD+ LA HA G+L W F Sbjct: 121 QDNGAIFERQRQSHQDGLVKMREHLRLAVERGQLPADLDLDLAVNAFHAAVGGVLAHWLF 180 Query: 181 SPDSFDLVSEGERVLAASMHALKTAPSLQ 209 SP F+L + ER+ A + LK +P+L+ Sbjct: 181 SPQDFNLDANAERLSDAFIDTLKFSPALR 209