BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0010.0005.p         (562 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

A4JD42.1 A4JD42_BURVG Lytic transglycosylase, catalytic               392   e-106

>A4JD42.1 A4JD42_BURVG Lytic transglycosylase, catalytic
          Length = 717

 Score =  392 bits (1006), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 240/507 (47%), Positives = 315/507 (62%), Gaps = 17/507 (3%)

Query: 57  SLGAGIGYGVGQTALGIQQLVGHGLKKAGADGAADWLINDANSGLANLKAQYQPYEDANP 116
           S  AG+G+GV +TALG QQL+GHG +  G +   +WL+NDAN GLA   A+Y PY+ A+P
Sbjct: 208 SFLAGLGHGVQETALGAQQLLGHGAQAVGLNNVGNWLVNDANQGLARGNAEYAPYQAAHP 267

Query: 117 KTAIAGNIGGSVLASIPLTAAVPGAGAVTAAKVIGRGALAGGLSGATAPVQNDSPDNDNF 176
             A AGNIGGS+ A+ PL    P A   T   +   GA  GG + A +PV    P++ NF
Sbjct: 268 IAAGAGNIGGSIAATAPLGVLAPTA--RTLGGMAAVGAGLGGATAALSPV---DPNSQNF 322

Query: 177 AKEKTLQ----ALAGAGMGAAGGALGKIISPTVSPEVKTLMSQGVTPTVGQIIGGNVAKA 232
           A +K  Q    AL G  +  A GA+G++ISP +SP+V+ LMS+GVTPT GQI+GG  A+ 
Sbjct: 323 AADKAKQIGIGALTGGVLSPAAGAVGRMISPNISPDVQLLMSKGVTPTPGQILGGGFART 382

Query: 233 EAKMTSLPVVGNLIKNAQVRAIENLNRAAYARTLAPIGGQAPQEVGREGVAAVKGAISDA 292
           E K+TS+PV+G++IKNAQ RA+   N AAY   LAPIG       G+EG+  V   I  A
Sbjct: 383 EDKLTSIPVLGDMIKNAQQRAVGQFNVAAYNDALAPIGKTFSGSAGQEGIEQVGKTIGKA 442

Query: 293 YNSLLPKLRFQADSQFAADLGNLSDMVANAQTNP-AVATQFNKVLQSDVISRMSKSGAMD 351
           Y+ +LPK++ + D QF AD+ NL  MV   Q  P A    F  VL++ +  ++   G MD
Sbjct: 443 YDDVLPKMQMRVDPQFQADVTNLGQMV---QGLPEAQQKTFMNVLKTQIFDKLGPQGNMD 499

Query: 352 GQNFKDMESALTQSIKKYRGSPDPANQDIGNALGEVLNSARSALSRSN-PQYADDLKGIN 410
           GQ  K ++S L ++   Y   P   N+  G A+  + ++  S LSR N P+ A+ L   N
Sbjct: 500 GQTLKGVQSELARTSSGYLKDPSFDNRQFGAAVSALRDAVDSNLSRVNPPELAEQLSNAN 559

Query: 411 QAYANFARLRDAAGRTGA--NTGIFTPEQLQSAVRSADRSVGKGSFATGNALMQDLSEAG 468
           QA+ANF RLR AA   GA  N G+FT  QLQSAVR AD+SVGKG+ A+G ALMQDLS AG
Sbjct: 560 QAWANFVRLRSAASSAGAMNNGGVFTGAQLQSAVRGADKSVGKGATASGKALMQDLSGAG 619

Query: 469 KTVLGSKYPDSGTAGR-IAGISGPASALTALHVAPLATSLGLGAMALGAMPYTKAGQKLA 527
           + VLGSKYPDSGT GR +  +  P S    +  AP +T   LG + LG++PYT+ G KLA
Sbjct: 620 QAVLGSKYPDSGTVGRGLMSLLAPGSVAAGMATAPTSTLATLGGIGLGSLPYTQTGGKLA 679

Query: 528 AGLLTVRPDAAQPIGELVTRGGLLSAP 554
           A LLT RP  AQP+G  V+  G L  P
Sbjct: 680 AALLTARPQFAQPVGNAVSSLGRLVVP 706