BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0009.0034.p         (74 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8IQ96.1 D8IQ96_HERSS Plant photosystem II stability/assembly fa...    99   1e-19

>D8IQ96.1 D8IQ96_HERSS Plant photosystem II stability/assembly factor
          protein
          Length = 331

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 52/52 (100%), Positives = 52/52 (100%)

Query: 1  MTFFKTSAIPLSLALLAASAAGAVFAQAAAPVTLAAARTDAHALHNMMLGAA 52
          MTFFKTSAIPLSLALLAASAAGAVFAQAAAPVTLAAARTDAHALHNMMLGAA
Sbjct: 1  MTFFKTSAIPLSLALLAASAAGAVFAQAAAPVTLAAARTDAHALHNMMLGAA 52