BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0023.p (158 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IP76.1 D8IP76_HERSS Transcription elongation factor greA 1 310 4e-83 A2RPN7.1 A2RPN7_HERSE Transcription elongation factor greA 310 4e-83 A4G4A7.1 A4G4A7_HERAR Transcription elongation factor greA 1 258 1e-67 F1W1H3.1 F1W1H3_9BURK Transcription elongation factor GreA 255 1e-66 A6T084.1 A6T084_JANMA Transcription elongation factor greA 2 254 2e-66 B2JFN6.1 B2JFN6_BURP8 Transcription elongation factor greA 2 239 1e-61 C6BJ85.1 C6BJ85_RALP1 Transcription elongation factor greA 1 238 3e-61 E2T349.1 E2T349_9RALS Transcription elongation factor greA 2 238 3e-61 C3X1N7.1 C3X1N7_OXAFO Transcription elongation factor greA 1 236 6e-61 Q39HN5.1 Q39HN5_BURS3 Transcription elongation factor greA 2 236 1e-60 >D8IP76.1 D8IP76_HERSS Transcription elongation factor greA 1 Length = 158 Score = 310 bits (794), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 158/158 (100%), Positives = 158/158 (100%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG Sbjct: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV Sbjct: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV Sbjct: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 >A2RPN7.1 A2RPN7_HERSE Transcription elongation factor greA Length = 158 Score = 310 bits (794), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 158/158 (100%), Positives = 158/158 (100%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG Sbjct: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV Sbjct: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV Sbjct: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 >A4G4A7.1 A4G4A7_HERAR Transcription elongation factor greA 1 Length = 157 Score = 258 bits (660), Expect = 1e-67, Method: Compositional matrix adjust. Identities = 120/156 (76%), Positives = 145/156 (92%) Query: 3 TVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEGRI 62 T P+T GA L+KEELHRLKTK+RP VINAIAEARAQGDLSENA+Y++AKE+Q+FIEGRI Sbjct: 2 TTPITPHGANLMKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEGRI 61 Query: 63 ADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKVSV 122 ADLEGKLG +QI+DP L A+GR+VFA+TVDLE+LDSG+KVTYQIVG+DEAD+KE KVS+ Sbjct: 62 ADLEGKLGTSQIIDPTTLEADGRIVFAATVDLEDLDSGDKVTYQIVGIDEADLKEKKVSI 121 Query: 123 TSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 TSPIARA+IGKS GDVVAVEAP+G++EYE+L+VRY+ Sbjct: 122 TSPIARAMIGKSVGDVVAVEAPAGIREYEVLQVRYI 157 >F1W1H3.1 F1W1H3_9BURK Transcription elongation factor GreA Length = 158 Score = 255 bits (652), Expect = 1e-66, Method: Compositional matrix adjust. Identities = 121/158 (76%), Positives = 147/158 (93%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MSTVP+TK GA+LLKEELHRLKTK+RP +INAI+EARAQGDLSENAEY++AKERQ+FIEG Sbjct: 1 MSTVPITKFGAQLLKEELHRLKTKERPSIINAISEARAQGDLSENAEYDAAKERQSFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RI+DLEGKLG++QI+DP L A+GR+VF STV LE+L++G+KVTYQIVG DEAD+K+ KV Sbjct: 61 RISDLEGKLGSSQIIDPLTLEADGRIVFGSTVYLEDLETGDKVTYQIVGTDEADLKQLKV 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 SVTSPIARALIGK AGDVV V+AP+G++EYE+LEVRY+ Sbjct: 121 SVTSPIARALIGKVAGDVVGVQAPAGVREYEVLEVRYI 158 >A6T084.1 A6T084_JANMA Transcription elongation factor greA 2 Length = 157 Score = 254 bits (650), Expect = 2e-66, Method: Compositional matrix adjust. Identities = 123/158 (77%), Positives = 146/158 (92%), Gaps = 1/158 (0%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MST P+T GA +LKEELHRLKTK+RP VINAIAEARAQGDLSENA+Y++AKE+Q+FIEG Sbjct: 1 MST-PITPYGANVLKEELHRLKTKERPWVINAIAEARAQGDLSENADYDAAKEKQSFIEG 59 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RIAD+EGKLG +Q++DP L AEGRVVFA+TVDLE+L+SGEKVTYQIVG+DEAD+KE KV Sbjct: 60 RIADIEGKLGTSQVIDPTTLEAEGRVVFAATVDLEDLESGEKVTYQIVGIDEADLKEKKV 119 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 S+TSPIARA+IGK AGDVV VEAP+GL+EYEIL+VRY+ Sbjct: 120 SITSPIARAMIGKYAGDVVGVEAPAGLREYEILQVRYI 157 >B2JFN6.1 B2JFN6_BURP8 Transcription elongation factor greA 2 Length = 158 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 114/158 (72%), Positives = 142/158 (89%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MST+PLTKRGA+ L++EL RLK+ +RP VIN+IAEARAQGDLSENAEY++AKE+Q FIEG Sbjct: 1 MSTIPLTKRGADQLRDELQRLKSVERPAVINSIAEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RIA++E KL AAQI+DP+ L+A+GRVVFA+TVDLE+LDSG+ VTYQIVG DEAD++ + Sbjct: 61 RIAEIESKLAAAQIIDPSALDADGRVVFAATVDLEDLDSGDSVTYQIVGDDEADLEHGLI 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 SV+SPIARALIGKS GDV AV+APSG++EYEI+ VRY+ Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIIAVRYI 158 >C6BJ85.1 C6BJ85_RALP1 Transcription elongation factor greA 1 Length = 158 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 113/158 (71%), Positives = 139/158 (87%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MST+P+TKRGAE+LKEELHRLKTK+RP V+NAIAEARAQGDLSENA+Y++AKERQ FIEG Sbjct: 1 MSTIPITKRGAEMLKEELHRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RI ++E KL AAQI+DPA L+A+GRVVF +T+DLE+LDSG+ VTYQIVG DEAD++ K+ Sbjct: 61 RIQEIESKLSAAQIIDPASLDADGRVVFGATIDLEDLDSGKPVTYQIVGDDEADLETGKI 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 S++SPIARALIGK GDV V AP G +EYE+L V+Y+ Sbjct: 121 SISSPIARALIGKFEGDVATVVAPGGEREYEVLAVKYL 158 >E2T349.1 E2T349_9RALS Transcription elongation factor greA 2 Length = 158 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 113/158 (71%), Positives = 139/158 (87%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MST+P+TKRGAE+LKEELHRLKTK+RP V+NAIAEARAQGDLSENA+Y++AKERQ FIEG Sbjct: 1 MSTIPITKRGAEMLKEELHRLKTKERPAVVNAIAEARAQGDLSENADYDAAKERQGFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RI ++E KL AAQI+DPA L+A+GRVVF +T+DLE+LDSG+ VTYQIVG DEAD++ K+ Sbjct: 61 RIQEIESKLSAAQIIDPASLDADGRVVFGATIDLEDLDSGKPVTYQIVGDDEADLETGKI 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 S++SPIARALIGK GDV V AP G +EYE+L V+Y+ Sbjct: 121 SISSPIARALIGKFEGDVATVVAPGGEREYEVLAVKYL 158 >C3X1N7.1 C3X1N7_OXAFO Transcription elongation factor greA 1 Length = 158 Score = 236 bits (603), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 111/158 (70%), Positives = 141/158 (89%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MS++P+T RGA++++EELHRLKTKDR EVI AIAEAR+ GDLSENAEY++AKERQAFIEG Sbjct: 1 MSSIPVTVRGAQMMREELHRLKTKDRYEVIAAIAEARSHGDLSENAEYDAAKERQAFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RIA+LE KL +AQ++DP LN GR+VFA+TV LE+L++GEKV+YQIVG DEAD+KE K+ Sbjct: 61 RIAELETKLSSAQVIDPTTLNTNGRIVFAATVALEDLETGEKVSYQIVGNDEADLKELKI 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 S+TSP+ARALIG+ AGDVV V AP+G++EYEILEV ++ Sbjct: 121 SITSPLARALIGREAGDVVEVNAPAGIREYEILEVLFI 158 >Q39HN5.1 Q39HN5_BURS3 Transcription elongation factor greA 2 Length = 158 Score = 236 bits (601), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 115/158 (72%), Positives = 139/158 (87%) Query: 1 MSTVPLTKRGAELLKEELHRLKTKDRPEVINAIAEARAQGDLSENAEYESAKERQAFIEG 60 MST+PLTKRGAELL++EL RLK+ +RP VINAI+EARAQGDLSENAEY++AKE+Q FIEG Sbjct: 1 MSTIPLTKRGAELLRDELQRLKSVERPAVINAISEARAQGDLSENAEYDAAKEKQGFIEG 60 Query: 61 RIADLEGKLGAAQIVDPAELNAEGRVVFASTVDLENLDSGEKVTYQIVGLDEADIKESKV 120 RIA+LE KL AAQ++DP L+AEGRVVFASTV+LE+L+SG+ V YQIVG DEADI + Sbjct: 61 RIAELESKLSAAQVIDPTVLDAEGRVVFASTVELEDLESGDTVKYQIVGDDEADIDHGLI 120 Query: 121 SVTSPIARALIGKSAGDVVAVEAPSGLKEYEILEVRYV 158 SV+SPIARALIGKS GDV AV+APSG++EYEI+ V Y+ Sbjct: 121 SVSSPIARALIGKSEGDVAAVQAPSGVREYEIISVSYI 158