BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0007.0010.p (184 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IP63.1 D8IP63_HERSS Two component response regulator protein 374 e-102 A6T1W4.1 A6T1W4_JANMA Two-components system response regulator 127 7e-28 Q396D4.1 Q396D4_BURS3 Two component transcriptional regulator, w... 107 8e-22 A4U4A2.1 A4U4A2_9PROT Two-component transcriptional regulator, w... 92 3e-17 C1D6M0.1 C1D6M0_LARHH Two component transcriptional regulator, w... 91 5e-17 C5CL60.1 C5CL60_VARPS Two component transcriptional regulator, w... 84 1e-14 D4XJP5.1 D4XJP5_9BURK Putative uncharacterized protein 82 4e-14 Q2W923.1 Q2W923_MAGSA Response regulator 80 1e-13 A4SEJ4.1 A4SEJ4_PROVI Two component transcriptional regulator, w... 75 3e-12 A4U393.1 A4U393_9PROT Two-component transcriptional regulator, w... 73 2e-11 >D8IP63.1 D8IP63_HERSS Two component response regulator protein Length = 224 Score = 374 bits (960), Expect = e-102, Method: Compositional matrix adjust. Identities = 184/184 (100%), Positives = 184/184 (100%) Query: 1 MMPARAGDIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADF 60 MMPARAGDIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADF Sbjct: 41 MMPARAGDIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADF 100 Query: 61 CEPMPVRLDILMTYINVILRRLVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAAN 120 CEPMPVRLDILMTYINVILRRLVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAAN Sbjct: 101 CEPMPVRLDILMTYINVILRRLVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAAN 160 Query: 121 SHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSEP 180 SHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSEP Sbjct: 161 SHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSEP 220 Query: 181 IQAR 184 IQAR Sbjct: 221 IQAR 224 >A6T1W4.1 A6T1W4_JANMA Two-components system response regulator Length = 220 Score = 127 bits (319), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 71/175 (40%), Positives = 99/175 (56%), Gaps = 1/175 (0%) Query: 8 DIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVR 67 DIA++D+G E+ LR + GI+++ A I +I L GAD PVR Sbjct: 45 DIALIDVGLPDADGFELAALLRKHRNKCGIIMLTAQG-GINHKIASLRGGADHYLVKPVR 103 Query: 68 LDILMTYINVILRRLVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAANSHHLASR 127 D L+ +I + RR+ G W+LD R L P+ A +++ E+ L LLAA S SR Sbjct: 104 YDELLAHIKALERRMGLGGWRLDTLERKLYAPNGHAEALSDHELKLFELLAAQSGQAVSR 163 Query: 128 SDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSEPIQ 182 IA FG ++D+DER LE+IVSRLRR+WRE+ LP +T HG+GY F I+ Sbjct: 164 RTIANAFGADWLDYDERRLEQIVSRLRRRWRENCPEELPFRTEHGKGYSFCADIE 218 >Q396D4.1 Q396D4_BURS3 Two component transcriptional regulator, winged helix family Length = 219 Score = 107 bits (267), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 71/179 (39%), Positives = 100/179 (55%), Gaps = 4/179 (2%) Query: 5 RAGDIA--IVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCE 62 RA D+A I+D+ G + LRA + GI+++ A + +I GL GAD Sbjct: 40 RASDLAFAIIDVMLPDGSGFDAAVWLRARHRDCGIVMLTARGDT-QDKIDGLIGGADHYL 98 Query: 63 PMPVRLDILMTYINVILRRLVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAANSH 122 PV+L L + + RR V W+LD +AR L P L+++ E+ALL LLA + Sbjct: 99 VKPVKLLELDAILQALGRR-VANDWRLDCQARVLSAPVGGRLELSASEIALLALLARHPS 157 Query: 123 HLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSEPI 181 SR IA FG +VD+DER LE +VSRLR++WR S LPL+T+H GY F+ P+ Sbjct: 158 KAVSRRQIAEDFGFDWVDYDERRLETMVSRLRQRWRSEAGSELPLKTVHRTGYTFAAPL 216 >A4U4A2.1 A4U4A2_9PROT Two-component transcriptional regulator, winged helix family Length = 229 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 63/181 (34%), Positives = 85/181 (46%), Gaps = 8/181 (4%) Query: 8 DIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVR 67 +IA++D+G + RLR + I IL++ A RI GL GAD PV Sbjct: 46 EIAVLDLGLPGEDGLSITHRLRMSHPEIRILMLTA-RSSQHHRISGLEKGADSYLTKPVD 104 Query: 68 LDILMTYINVILRRLVPGV-------WQLDLKARTLRTPSNDALKVNEKEMALLRLLAAN 120 + L I I RR+ P V W L L T+ TP + + + EM LLR LA Sbjct: 105 MRELCAVIESIRRRISPAVADHRAPGWTLSLSTMTIMTPKGERITLTPTEMLLLRPLAEA 164 Query: 121 SHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSEP 180 + + SR A G D+D R LE ++SRLRRK S S ++ G GY F+ P Sbjct: 165 APDIVSRQQFAKALGHREEDYDYRRLEAVISRLRRKIATSDEESSVIKPARGRGYIFAAP 224 Query: 181 I 181 I Sbjct: 225 I 225 >C1D6M0.1 C1D6M0_LARHH Two component transcriptional regulator, winged helix family Length = 183 Score = 91.3 bits (225), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 59/174 (33%), Positives = 90/174 (51%), Gaps = 1/174 (0%) Query: 9 IAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVRL 68 +AI D+ G + V LR +AR GI+++ A + GL+ GAD PV L Sbjct: 9 MAICDVMLPDGSGFDFVSSLREHSARCGIVMLTARSG-THDIVTGLHGGADHYLVKPVNL 67 Query: 69 DILMTYINVILRRLVPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAANSHHLASRS 128 L ++ + RR + W L+ A LR+P L+++ E LL +LAA + SR Sbjct: 68 LQLDATLHALARRALRHCWVLEKAALALRSPDGVILELSTGEWQLLSVLAAARGNAVSRK 127 Query: 129 DIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSEPIQ 182 DI G +++FD+R L+ VSRLR++WR LPL+T H GY + ++ Sbjct: 128 DIVQAQGHEWLEFDQRRLDTQVSRLRQRWRLVAGHELPLKTAHRSGYVLTVAVE 181 >C5CL60.1 C5CL60_VARPS Two component transcriptional regulator, winged helix family Length = 237 Score = 83.6 bits (205), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 64/185 (34%), Positives = 85/185 (45%), Gaps = 17/185 (9%) Query: 8 DIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVR 67 DIA+VD+G VV LRAV R+G++L+ A E + R+LGL GAD PV Sbjct: 55 DIAVVDIGLPGESGLAVVSHLRAVQRRLGLVLVTARGE-LEDRLLGLREGADAYLVKPVN 113 Query: 68 LDILMTYINVILRRLV-------------PGVWQLDLKARTLRTPSNDALKVNEKEMALL 114 + L +N + RRL P W+L L P + + E A L Sbjct: 114 MLELAETLNAVGRRLTVAPQGNAATLPAAPADWRLLEGDWILGDPEGRQMALTTSERAFL 173 Query: 115 RLLAANSHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLS-SLPLQTLHGE 173 L ASR D+ G DFDE ++ I SRLRRK +KL LPL ++ G Sbjct: 174 ACLFGQRGTAASRDDLIRALGGDVFDFDEHRIDAIASRLRRK--AAKLGMRLPLHSVRGT 231 Query: 174 GYYFS 178 GY + Sbjct: 232 GYVLA 236 >D4XJP5.1 D4XJP5_9BURK Putative uncharacterized protein Length = 232 Score = 81.6 bits (200), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 53/180 (29%), Positives = 95/180 (52%), Gaps = 10/180 (5%) Query: 9 IAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVRL 68 +AI+D+G G ++++RLR ++GI++++A + A RI GL GAD L Sbjct: 48 LAIIDIGLPDGCGLDLIQRLRQEGQQVGIVVLSAR-QTSADRISGLGIGADHYLGKGCDL 106 Query: 69 DILMTYINVILRRL---------VPGVWQLDLKARTLRTPSNDALKVNEKEMALLRLLAA 119 D L ++ ++RRL P W L++ R L P + ++ +++ +LR L + Sbjct: 107 DELAAVLSALVRRLGLQQAPAQAAPSAWTLEVGPRRLIIPHAPPVSLSHQDLIVLRCLMS 166 Query: 120 NSHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGYYFSE 179 + SR I G ++D+D+R L+ + RLRR+ ++ +LP++TL GY F + Sbjct: 167 QAGENISRRQIIEALGFDFLDYDQRRLDTQMRRLRRRVEDASGQTLPVKTLRSSGYCFYQ 226 >Q2W923.1 Q2W923_MAGSA Response regulator Length = 279 Score = 80.1 bits (196), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 52/198 (26%), Positives = 97/198 (48%), Gaps = 16/198 (8%) Query: 1 MMPARAGDIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADF 60 ++P + D+ ++D+ + RLR+ +++GI+++ A + + R+LGL +GAD Sbjct: 79 LLPDFSPDLLVLDVNLPGEDGFSIAARLRSA-SKVGIIMLTARGQ-LDDRVLGLTAGADA 136 Query: 61 CEPMPVRLDILMTYINVILRRLVP--------------GVWQLDLKARTLRTPSNDALKV 106 PV+ L I+ + RRL W D + +L TP+ + + Sbjct: 137 YLVKPVQFRELEAVIHSLTRRLSEPPAEEKRETREDGNQTWGFDAASWSLITPNGHRVPL 196 Query: 107 NEKEMALLRLLAANSHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLP 166 E +L+ L +R DIA GK +D+R ++ +++RLRRK + +LP Sbjct: 197 TNAEYRVLQTLTQEPGASVARDDIAAALGKSVGGYDDRSIDAVMARLRRKVNAATGENLP 256 Query: 167 LQTLHGEGYYFSEPIQAR 184 ++ + GY F+ P++AR Sbjct: 257 VRAVRSVGYVFAAPVEAR 274 >A4SEJ4.1 A4SEJ4_PROVI Two component transcriptional regulator, winged helix family Length = 241 Score = 75.5 bits (184), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 59/186 (31%), Positives = 89/186 (47%), Gaps = 17/186 (9%) Query: 9 IAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVRL 68 IAI+D+ + + +RA N + IL++ A + R+ G SGAD PV Sbjct: 55 IAILDLALPDQDGLVISQYIRA-NTGMRILMLTAR-TSVEDRLAGYESGADVYLVKPVDF 112 Query: 69 DILMTYINVILRRL----VPGV---------WQLDLKARTLRTPSNDALKVNEKEMALLR 115 L + I RL PG+ W+L+ + TL +P D +K+ KE L Sbjct: 113 RELAASLESIFGRLEADSAPGITAYNEGRNHWKLNSEGWTLESPEGDLVKMTSKEYQFLY 172 Query: 116 LLAANSHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHGEGY 175 LA S H+ SR ++ + G + R LE +V RLR+K ++L + P++T G GY Sbjct: 173 ALAEASGHIVSREELLPILGYAINESANRSLESLVYRLRKKI-STELDT-PIKTASGSGY 230 Query: 176 YFSEPI 181 FS PI Sbjct: 231 TFSAPI 236 >A4U393.1 A4U393_9PROT Two-component transcriptional regulator, winged helix family Length = 236 Score = 72.8 bits (177), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 57/192 (29%), Positives = 87/192 (45%), Gaps = 17/192 (8%) Query: 8 DIAIVDMGRAAGPACEVVRRLRAVNARIGILLIAAPDECIASRILGLNSGADFCEPMPVR 67 D+ I+D+ + +RLR ++ IGI+++ A + R++GL GAD PV Sbjct: 47 DLIILDINLPGEDGFSIAKRLRD-HSEIGIIMLTARGVNV-DRVVGLEIGADVYLVKPVE 104 Query: 68 LDILMTYINVILRRL-----VP----------GVWQLDLKARTLRTPSNDALKVNEKEMA 112 L L + + RRL VP W D A +L +P + K+ E Sbjct: 105 LRELEAQVRSLSRRLQGAATVPVAAGGLTPTGAQWVYDQLAWSLVSPDGGSTKLTANERV 164 Query: 113 LLRLLAANSHHLASRSDIAGVFGKPYVDFDERMLEKIVSRLRRKWRESKLSSLPLQTLHG 172 + LL SRS I GK D +R ++ +V RLR K E+ LP++ +HG Sbjct: 165 FVSLLVERPGEPVSRSAIFKALGKREWDAGDRSVDSMVRRLRAKGEEALGRELPIEAVHG 224 Query: 173 EGYYFSEPIQAR 184 GY F+ P+ R Sbjct: 225 TGYAFTAPVAVR 236