BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0002.p (146 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IPJ9.1 D8IPJ9_HERSS Ribonuclease HI protein EC=3.1.26.4 294 2e-78 A4G7G3.1 RNH_HERAR Ribonuclease H EC=3.1.26.4 258 2e-67 A6SXA4.1 RNH_JANMA Ribonuclease H EC=3.1.26.4 258 2e-67 A0SZ38.1 A0SZ38_9BURK RNase H EC=3.1.26.4 251 3e-65 F1VTY0.1 F1VTY0_9BURK Ribonuclease HI 249 1e-64 B3R1Y2.1 B3R1Y2_CUPTR Ribonuclease H (RNase H) EC=3.1.26.4 244 2e-63 Q1LL89.1 RNH_RALME Ribonuclease H EC=3.1.26.4 244 4e-63 Q0K8W6.1 RNH_CUPNH Ribonuclease H EC=3.1.26.4 243 9e-63 D5WA82.1 D5WA82_BURSC Ribonuclease H EC=3.1.26.4 239 1e-61 B4EEJ2.1 B4EEJ2_BURCJ Ribonuclease H EC=3.1.26.4 238 3e-61 >D8IPJ9.1 D8IPJ9_HERSS Ribonuclease HI protein EC=3.1.26.4 Length = 143 Score = 294 bits (753), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 143/143 (100%), Positives = 143/143 (100%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR Sbjct: 1 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV Sbjct: 61 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGHAGNERADQLANRGVESI Sbjct: 121 RGHNGHAGNERADQLANRGVESI 143 >A4G7G3.1 RNH_HERAR Ribonuclease H EC=3.1.26.4 Length = 146 Score = 258 bits (660), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 118/143 (82%), Positives = 133/143 (93%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M+K++I++DGACKGNPGRGGWGALLV G +EKE+FGGEP TTNNRMEL AVI+ALNAL R Sbjct: 1 MEKIDIFTDGACKGNPGRGGWGALLVMGEREKELFGGEPGTTNNRMELKAVIEALNALTR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PCEV+VHTDSQYVQKGISEWIHGWKARGWKTA++ PVKN DLWQALDAAQ +HQ+EWRWV Sbjct: 61 PCEVIVHTDSQYVQKGISEWIHGWKARGWKTAARAPVKNVDLWQALDAAQARHQIEWRWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGH GNERAD LANRGVE++ Sbjct: 121 RGHNGHVGNERADALANRGVETV 143 >A6SXA4.1 RNH_JANMA Ribonuclease H EC=3.1.26.4 Length = 144 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 122/141 (86%), Positives = 131/141 (92%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 MDK++IYSDGACKGNPGRGGWGALLV G +EKEIFGGE +TTNNRMEL AVI+ALN L R Sbjct: 1 MDKIDIYSDGACKGNPGRGGWGALLVMGEREKEIFGGELDTTNNRMELKAVIEALNLLTR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTA+K PVKN DLWQALDAAQ +H++EWRWV Sbjct: 61 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDAAQARHKIEWRWV 120 Query: 124 RGHNGHAGNERADQLANRGVE 144 RGHNGHAGNERAD LANRGVE Sbjct: 121 RGHNGHAGNERADALANRGVE 141 >A0SZ38.1 A0SZ38_9BURK RNase H EC=3.1.26.4 Length = 145 Score = 251 bits (641), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 118/143 (82%), Positives = 130/143 (90%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 MDKVEIY+DGACKGNPG GGWGAL+VA G +KEI+GGE NTTNNRMEL AVI+AL ALKR Sbjct: 1 MDKVEIYADGACKGNPGTGGWGALMVADGAKKEIYGGELNTTNNRMELKAVIEALTALKR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PC+VV++TDSQYVQKGISEWIHGWKARGWKTA+K PVKN DLWQALD AQ H+VEWRWV Sbjct: 61 PCQVVLYTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDTAQAVHEVEWRWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGH GNERADQLAN GVE++ Sbjct: 121 RGHNGHPGNERADQLANLGVETV 143 >F1VTY0.1 F1VTY0_9BURK Ribonuclease HI Length = 144 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 116/143 (81%), Positives = 131/143 (91%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M+KVEIY+DGACKGNPGRGGWGA LVAG EKE+FGGE +TTNNRMEL AVI+AL AL+R Sbjct: 1 MEKVEIYTDGACKGNPGRGGWGAWLVAGTNEKELFGGERDTTNNRMELKAVIEALTALRR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PC+V+VHTDSQYVQKGISEWI+GWK RGWKTA++EPVKN DLWQALD AQQ HQ++WRWV Sbjct: 61 PCDVIVHTDSQYVQKGISEWINGWKKRGWKTAAREPVKNVDLWQALDLAQQMHQIQWRWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGH+GH GNERAD LANRGV+SI Sbjct: 121 RGHSGHVGNERADVLANRGVDSI 143 >B3R1Y2.1 B3R1Y2_CUPTR Ribonuclease H (RNase H) EC=3.1.26.4 Length = 145 Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 116/143 (81%), Positives = 125/143 (87%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M +V IYSDGACKGNPGRGGWGA+LVAG EKE+FGGEPNTTNNRME+ AVI+AL ALKR Sbjct: 1 MQEVTIYSDGACKGNPGRGGWGAVLVAGTSEKELFGGEPNTTNNRMEMTAVIEALRALKR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PC V V+TDSQYVQKGISEW+ GWKARGWKTA K+PVKNADLWQALD Q HQ+ W WV Sbjct: 61 PCVVRVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQALDTLAQAHQISWHWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGH GNERAD LANRGVESI Sbjct: 121 RGHNGHPGNERADALANRGVESI 143 >Q1LL89.1 RNH_RALME Ribonuclease H EC=3.1.26.4 Length = 145 Score = 244 bits (622), Expect = 4e-63, Method: Compositional matrix adjust. Identities = 117/143 (81%), Positives = 126/143 (88%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M +V IYSDGACKGNPG GGWGA+LVAGG EKE+FGGE TTNNRMELMAVI+AL ALKR Sbjct: 1 MQEVTIYSDGACKGNPGPGGWGAVLVAGGHEKELFGGESPTTNNRMELMAVIEALRALKR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PC V ++TDSQYVQKGISEWIHGWKARGWKTA K+PVKNADLWQALD AQ+ HQ+ W WV Sbjct: 61 PCIVNIYTDSQYVQKGISEWIHGWKARGWKTADKKPVKNADLWQALDEAQKPHQITWHWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGH GNERAD LANRGV SI Sbjct: 121 RGHNGHPGNERADALANRGVASI 143 >Q0K8W6.1 RNH_CUPNH Ribonuclease H EC=3.1.26.4 Length = 145 Score = 243 bits (619), Expect = 9e-63, Method: Compositional matrix adjust. Identities = 115/143 (80%), Positives = 124/143 (86%) Query: 4 MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 63 M +V IYSDGACKGNPGRGGWGA+LVAG EKE+FGGEPNTTNNRME+ AVI+AL ALKR Sbjct: 1 MQEVTIYSDGACKGNPGRGGWGAVLVAGASEKEMFGGEPNTTNNRMEMTAVIEALRALKR 60 Query: 64 PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 123 PC V V+TDSQYVQKGISEW+ GWKARGWKTA K+PVKNADLWQ LD Q HQ+ W WV Sbjct: 61 PCVVRVYTDSQYVQKGISEWLPGWKARGWKTADKKPVKNADLWQELDTLAQPHQISWHWV 120 Query: 124 RGHNGHAGNERADQLANRGVESI 146 RGHNGH GNERAD LANRGVESI Sbjct: 121 RGHNGHPGNERADALANRGVESI 143 >D5WA82.1 D5WA82_BURSC Ribonuclease H EC=3.1.26.4 Length = 148 Score = 239 bits (609), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 112/142 (78%), Positives = 124/142 (87%) Query: 5 DKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKRP 64 D ++IY+DGACKGNPG GGWGALL G +EKE+FGGE NTTNNRMELM VI AL ALKRP Sbjct: 4 DHIDIYTDGACKGNPGPGGWGALLRFGSQEKELFGGEANTTNNRMELMGVISALEALKRP 63 Query: 65 CEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWVR 124 C+V+VHTDSQYVQKGISEWIHGWK +GW TA+K+PVKNADLW+ LDA QHQVEWRWVR Sbjct: 64 CKVIVHTDSQYVQKGISEWIHGWKKKGWVTAAKQPVKNADLWKRLDALVAQHQVEWRWVR 123 Query: 125 GHNGHAGNERADQLANRGVESI 146 GHNGH NERADQLANRGV S+ Sbjct: 124 GHNGHPENERADQLANRGVASL 145 >B4EEJ2.1 B4EEJ2_BURCJ Ribonuclease H EC=3.1.26.4 Length = 147 Score = 238 bits (606), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 110/144 (76%), Positives = 123/144 (85%) Query: 3 SMDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALK 62 + D ++IY+DGACKGNPG GGWGALL G +EKE+FGGEPNTTNNRMELM VI AL ALK Sbjct: 2 TTDTIDIYTDGACKGNPGPGGWGALLRYGSQEKELFGGEPNTTNNRMELMGVIAALEALK 61 Query: 63 RPCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRW 122 RPC V+VHTDSQYVQKGISEWIHGWK +GW TA+K PVKNADLW+ LDA QH++EWRW Sbjct: 62 RPCRVIVHTDSQYVQKGISEWIHGWKKKGWVTAAKTPVKNADLWKRLDALVAQHEIEWRW 121 Query: 123 VRGHNGHAGNERADQLANRGVESI 146 VRGH GH NERAD LANRGVES+ Sbjct: 122 VRGHAGHPENERADALANRGVESL 145