BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0006.0001.p (244 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IPJ8.1 D8IPJ8_HERSS DNA polymerase III, epsilon subunit, prote... 493 e-138 A4G7G2.1 A4G7G2_HERAR DNA polymerase III subunit epsilon EC=2.7.7.7 337 8e-91 F1VTX9.1 F1VTX9_9BURK DNA polymerase III epsilon subunit 334 6e-90 A6SXA5.1 A6SXA5_JANMA DNA polymerase III epsilon subunit EC=2.7.7.7 323 1e-86 E8YL09.1 E8YL09_9BURK DNA polymerase III, epsilon subunit EC=2.7... 322 3e-86 A4JD94.1 A4JD94_BURVG DNA polymerase III, epsilon subunit EC=2.7... 320 1e-85 A2WB57.1 A2WB57_9BURK DNA polymerase III, epsilon subunit 319 2e-85 E1T537.1 E1T537_BURSG DNA polymerase III, epsilon subunit EC=2.7... 319 2e-85 B2JFM8.1 B2JFM8_BURP8 DNA polymerase III, epsilon subunit EC=2.7... 318 3e-85 D5WA83.1 D5WA83_BURSC DNA polymerase III, epsilon subunit EC=2.7... 318 4e-85 >D8IPJ8.1 D8IPJ8_HERSS DNA polymerase III, epsilon subunit, protein EC=2.7.7.7 Length = 244 Score = 493 bits (1270), Expect = e-138, Method: Compositional matrix adjust. Identities = 243/244 (99%), Positives = 243/244 (99%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT Sbjct: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS Sbjct: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG Sbjct: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 Query: 181 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPPPEAA 240 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPPPEA Sbjct: 181 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPPPEAT 240 Query: 241 AEAA 244 AEAA Sbjct: 241 AEAA 244 >A4G7G2.1 A4G7G2_HERAR DNA polymerase III subunit epsilon EC=2.7.7.7 Length = 234 Score = 337 bits (864), Expect = 8e-91, Method: Compositional matrix adjust. Identities = 157/231 (67%), Positives = 196/231 (84%), Gaps = 1/231 (0%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGL+PR+G+RI+EIGCVE+++R+L+G N H YINPERDSEEGALAVHGLT Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELIDRRLTGNNFHHYINPERDSEEGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F +I EF DY+ GA+++IHNAPFDVGFLDAEL + +P FKDHV ++D+ Sbjct: 61 TEFLSDKPKFAEIVDEFRDYISGAEVVIHNAPFDVGFLDAELKRVEMPLFKDHVGGILDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 LQ AKELHPG+RNSLDALCDRYG+SNAHR LHGALLDAELLAEVYL+MTRGQNSL+MDLG Sbjct: 121 LQQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMDLG 180 Query: 181 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 ++ S+G LE+ +A++++ A+ EEL HE ++ LDKE +G C+WR Sbjct: 181 GQDADSDGIA-LEVVAIADILLQPATAEELAEHELLMQSLDKEVKGQCLWR 230 >F1VTX9.1 F1VTX9_9BURK DNA polymerase III epsilon subunit Length = 235 Score = 334 bits (857), Expect = 6e-90, Method: Compositional matrix adjust. Identities = 157/232 (67%), Positives = 189/232 (81%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGL+PR+G+R++EIGCVE++NR+L+GKN H Y+NPERDSEEGALAVHGLT Sbjct: 1 MRQIVLDTETTGLNPRSGDRVIEIGCVEMINRRLTGKNFHCYLNPERDSEEGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL DKP F +AAE DY+ GA++IIHNAPFDVGFLDAE L +P F V V+D+ Sbjct: 61 TEFLRDKPKFAAVAAELRDYISGAEVIIHNAPFDVGFLDAEFKRLDIPLFNTQVSGVIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AKE+HPG+RNSLD+LCDRYG+SNAHR LHGALLDAELLAEVYL+MTRGQNSL+M+L Sbjct: 121 LVQAKEMHPGKRNSLDSLCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMELD 180 Query: 181 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRF 232 + E LEL PLA+++V+ AS EELG HE L LDKE RG+ +WR Sbjct: 181 DGDQAGESGAHLELVPLADILVLPASAEELGEHELALTALDKEMRGTSLWRM 232 >A6SXA5.1 A6SXA5_JANMA DNA polymerase III epsilon subunit EC=2.7.7.7 Length = 235 Score = 323 bits (828), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 160/231 (69%), Positives = 195/231 (84%), Gaps = 1/231 (0%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGL+PR+G+RI+EIGCVE++NR+L+G N H YINPERDSEEGALAVHGLT Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELVNRRLTGNNFHHYINPERDSEEGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F +IAAEF DY+ GA +IIHNAPFD+GFLDAEL + P FK+HV +V+D+ Sbjct: 61 TEFLSDKPKFAEIAAEFRDYISGADVIIHNAPFDIGFLDAELKRVNTPSFKEHVGEVIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AKE+HPG+RNSLDALCDRYGISNAHR LHGALLDAELLAEVYL+MTRGQNSL+MDLG Sbjct: 121 LVQAKEMHPGKRNSLDALCDRYGISNAHRALHGALLDAELLAEVYLAMTRGQNSLSMDLG 180 Query: 181 AEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 A + S+G+ LE+ +A V ++AA+ EEL H ++ LDK+ +G VWR Sbjct: 181 ASDVGSDGQ-VLEVVAIAPVQLLAATAEELAAHAAMVESLDKQVKGQSVWR 230 >E8YL09.1 E8YL09_9BURK DNA polymerase III, epsilon subunit EC=2.7.7.7 Length = 244 Score = 322 bits (825), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 153/238 (64%), Positives = 191/238 (80%), Gaps = 3/238 (1%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQ+ILDTETTGL+ R G+RI+E+GCVE++NR+L+G NLHFYINPERDS+ GALAVHGLT Sbjct: 1 MRQLILDTETTGLNARTGDRIIEVGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F +IA EF D+++GA +IIHNAPFD+GFLDAE ALLGLPP H +++D+ Sbjct: 61 TEFLSDKPKFAEIADEFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEIIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AK++ PG+RNSLDALCDR+GISNAHR LHGALLD+ELLAEVYL+MTRGQ SL +D+ Sbjct: 121 LARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDML 180 Query: 181 AEEDVSEGEGKLELAPL--AEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPP 236 E GE L +++V+AAS+EEL H+ VL+ LDK +G+ VWR EP P Sbjct: 181 GESHAG-GEAHAPRVALDSLDLVVIAASDEELAAHQAVLDGLDKAIKGTSVWRLEPAP 237 >A4JD94.1 A4JD94_BURVG DNA polymerase III, epsilon subunit EC=2.7.7.7 Length = 244 Score = 320 bits (820), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 152/235 (64%), Positives = 197/235 (83%), Gaps = 6/235 (2%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQIILDTETTGL+PR+G+R++EIGCVE+LNR+L+G NLH Y+NPERDS+ GALAVHGLT Sbjct: 1 MRQIILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F ++A + D+V+GA++IIHNAPFD+GFLDAE A LGLPPF +H V+D+ Sbjct: 61 TEFLSDKPKFAEVADQIRDFVKGAELIIHNAPFDLGFLDAEFARLGLPPFIEHCDGVIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDL- 179 L AK++ PG+RNSLDALCDR+GISNAHR LHGALLD+ELLAEVYL+MTRGQ+SL +D+ Sbjct: 121 LAEAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDML 180 Query: 180 ---GAEEDVSEGEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 GA+ + G+ ++ LA L ++ VVAAS++EL H+ L++LDK +G+CVWR Sbjct: 181 DDAGADGGTANGQ-RISLASL-DLPVVAASDDELAAHQAQLDELDKSVKGTCVWR 233 >A2WB57.1 A2WB57_9BURK DNA polymerase III, epsilon subunit Length = 244 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 151/233 (64%), Positives = 190/233 (81%), Gaps = 2/233 (0%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQIILDTETTGL+ R G+RI+EIGCVE+LNR+L+G NLHFY+NPERDS+ GALAVHGLT Sbjct: 1 MRQIILDTETTGLNARAGDRIIEIGCVELLNRRLTGNNLHFYVNPERDSDPGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F ++A + ++VRGA++IIHNAPFD+GFLDAE ALLGLPPF +H V+D+ Sbjct: 61 TEFLSDKPKFAEVADQIREFVRGAELIIHNAPFDLGFLDAEFALLGLPPFSEHCAGVIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AK++ PG+RNSLDALCDR+GISNAHR LHGALLD+ELLAEVYL+MTRGQ+SL +D+ Sbjct: 121 LVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDML 180 Query: 181 AEEDVSEGEGKLELAPLA--EVIVVAASEEELGLHEDVLNQLDKEARGSCVWR 231 + G + LA ++ V+AAS+EEL H L++LDK +G+CVWR Sbjct: 181 DDAATVGGAANGQRVSLAALDLPVLAASDEELAAHHAQLDELDKSVKGTCVWR 233 >E1T537.1 E1T537_BURSG DNA polymerase III, epsilon subunit EC=2.7.7.7 Length = 244 Score = 319 bits (817), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 152/240 (63%), Positives = 193/240 (80%), Gaps = 7/240 (2%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQ+ILDTETTGL+ R G+RILE+GCVE++NR+L+G NLHFYINPERDS+ GALAVHGLT Sbjct: 1 MRQLILDTETTGLNARTGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F +IA +F D+++GA +IIHNAPFD+GFLDAE ALLGLPP + +++D+ Sbjct: 61 TEFLSDKPKFAEIADQFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTYCGEIIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AK++ PG+RNSLDALCDR+GISNAHR LHGALLD+ELLAEVYL+MTRGQ SL +D+ Sbjct: 121 LARAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDML 180 Query: 181 AEEDVSEGEGKLELAPLA----EVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPP 236 E S G+ +A E++V+AAS+EE+ H+ VL+ LDK +G+ VWR EP P Sbjct: 181 GE---SHAGGEAHAPRVAIESLELVVIAASDEEVAAHQAVLDGLDKAIKGTSVWRLEPAP 237 >B2JFM8.1 B2JFM8_BURP8 DNA polymerase III, epsilon subunit EC=2.7.7.7 Length = 249 Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 153/244 (62%), Positives = 193/244 (79%), Gaps = 1/244 (0%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQIILDTETTGL+ R G+RI+EIGCVE++NR+L+G NLHFYINPERDS+ GALAVHGLT Sbjct: 1 MRQIILDTETTGLNARTGDRIIEIGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F +IA D+++ A++IIHNAPFD+GFLDAE ALLGLPPF + +V+D+ Sbjct: 61 TEFLSDKPKFAEIADTLRDFIQDAELIIHNAPFDIGFLDAEFALLGLPPFSQYCGEVIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AK + PG+RNSLDALCDR+GISNAHR LHGALLD+ELLAEVYL+MTRGQ SL +D+ Sbjct: 121 LVRAKSMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDML 180 Query: 181 AEEDVSE-GEGKLELAPLAEVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPPPEA 239 E + G K + E+IV+AA+++EL HE +L+ LDK +G+ VWR P +A Sbjct: 181 GETAADDAGGAKRVMLDTLELIVLAATDDELAEHEALLDGLDKSLKGTSVWRTHPTTEDA 240 Query: 240 AAEA 243 +A A Sbjct: 241 SATA 244 >D5WA83.1 D5WA83_BURSC DNA polymerase III, epsilon subunit EC=2.7.7.7 Length = 244 Score = 318 bits (815), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 151/240 (62%), Positives = 192/240 (80%), Gaps = 7/240 (2%) Query: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 MRQ+ILDTETTGL+ R G+RILE+GCVE++NR+L+G NLHFYINPERDS+ GALAVHGLT Sbjct: 1 MRQLILDTETTGLNARGGDRILELGCVELVNRRLTGNNLHFYINPERDSDPGALAVHGLT 60 Query: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 TEFL+DKP F +I +F D+++GA +IIHNAPFD+GFLDAE ALLGLPP H +++D+ Sbjct: 61 TEFLSDKPKFAEIIDQFRDFIQGADLIIHNAPFDIGFLDAEFALLGLPPVSTHCGEIIDT 120 Query: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 L AK++ PG+RNSLDALCDR+GISNAHR LHGALLD+ELLAEVYL+MTRGQ SL +D+ Sbjct: 121 LAQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDML 180 Query: 181 AEEDVSEGEGKLELAPLA----EVIVVAASEEELGLHEDVLNQLDKEARGSCVWRFEPPP 236 E ++ G + +A E++V+AAS++E HE VL+ LDK +G+ VWR EP P Sbjct: 181 GE---AQAGGDTDAPRVALDSLELVVIAASDDESAAHEAVLDDLDKAIKGASVWRLEPAP 237