BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0005.0019.p (611 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J1E6.1 D8J1E6_HERSS Methyl-accepting chemotaxis transducer tra... 1053 0.0 B2U9E6.1 B2U9E6_RALPJ Methyl-accepting chemotaxis sensory transd... 649 0.0 D8ND65.1 D8ND65_RALSO Methyl-accepting chemotaxis transducer tra... 638 0.0 D8NKF7.1 D8NKF7_RALSO Methyl-accepting chemotaxis transducer tra... 637 e-180 D8NUX5.1 D8NUX5_RALSO Methyl-accepting chemotaxis transducer tra... 633 e-179 E2SZP9.1 E2SZP9_9RALS Chemotaxis sensory transducer 628 e-178 Q8Y089.1 Q8Y089_RALSO Probable methyl-accepting chemotaxis trans... 628 e-178 C6BG84.1 C6BG84_RALP1 Methyl-accepting chemotaxis sensory transd... 627 e-177 B5SM59.1 B5SM59_RALSO Methyl-accepting chemotaxis transducer pro... 626 e-177 A3RW58.1 A3RW58_RALSO Probable transmembrane methyl-accepting ch... 625 e-177 >D8J1E6.1 D8J1E6_HERSS Methyl-accepting chemotaxis transducer transmembrane protein Length = 609 Score = 1053 bits (2723), Expect = 0.0, Method: Compositional matrix adjust. Identities = 604/611 (98%), Positives = 606/611 (99%), Gaps = 2/611 (0%) Query: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA Sbjct: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 Query: 61 LADSGALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDP 120 LADSGALSKEDAQKLAKQA+KSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDL+NFKDP Sbjct: 61 LADSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDP 120 Query: 121 AGNNLFVEITKAGSKPEGSFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 AGNNLFVEITKAGSKPEG FVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN Sbjct: 121 AGNNLFVEITKAGSKPEGGFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 Query: 181 AAFLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 AAFLRTLWQMALLFAAVSAALVALVIVIN GILRTIGGDPAQAAEVANRIAQGDLTPNIE Sbjct: 181 AAFLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 Query: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE Sbjct: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD Sbjct: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 Query: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG Sbjct: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 Query: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT 540 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT Sbjct: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT 540 Query: 541 PPATPAPALRKPAAPQPARPALAASKGAAPKAAPKTAAAQPAKAEAPAAKPTGKSPSRLP 600 PPAT PALRKPAAPQPARPALAASK AAPKAAPKTAAAQPAKAEAPAAKPTGKSPSRLP Sbjct: 541 PPAT--PALRKPAAPQPARPALAASKAAAPKAAPKTAAAQPAKAEAPAAKPTGKSPSRLP 598 Query: 601 AGEDEGDWETF 611 AGEDEGDWETF Sbjct: 599 AGEDEGDWETF 609 >B2U9E6.1 B2U9E6_RALPJ Methyl-accepting chemotaxis sensory transducer Length = 621 Score = 649 bits (1673), Expect = 0.0, Method: Compositional matrix adjust. Identities = 365/622 (58%), Positives = 452/622 (72%), Gaps = 12/622 (1%) Query: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 M +LSF +KLWLPL++SL+AL IS+F+A R IR+EERK +L ++ A++LVK Y Sbjct: 1 MSKLSFRQKLWLPLIISLVALTLISVFNAYQAREIRVEERKNNLVSVTTMAVNLVKQYDD 60 Query: 61 LADSGALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDP 120 L +G LSK+ AQK A K+LRY DGYF+I++S ++VMHPIK E GKD + FKD Sbjct: 61 LTKNGTLSKDAAQKEALDRFKALRYDKDGYFTITSSNNVVVMHPIKPEFIGKDQSGFKDA 120 Query: 121 AGNNLFVEITKAGSKPEGSFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 GN ++V ++ A P+G F Y+WPKVG +EPVPKT+F + Y+PWDW +TG YMDDIN Sbjct: 121 QGNAVYVGLSNAAKDPKGGFTSYVWPKVGGSEPVPKTAFAMRYEPWDWVFSTGVYMDDIN 180 Query: 181 AAFLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 AAF+ +L+Q L V L+ L V NR + RT+GGDPA AA+VANRIA GDLT I Sbjct: 181 AAFMTSLYQTGGLLVLVGGLLLLLGGVANRSLQRTLGGDPAYAADVANRIAGGDLTLEIA 240 Query: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 T D++SLLYA+ MR +L+ TI IK ++ TI +A++EIASGNLDLS RTEQQA S+E Sbjct: 241 TRADDNNSLLYAMSRMRGALVDTIGRIKGASETIGTATREIASGNLDLSSRTEQQASSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 ETASAME+L +TV+QNADNA+QANQLA SAS+VA++GG VV++VV+TM I SSRKI D Sbjct: 301 ETASAMEQLMSTVQQNADNAQQANQLAASASDVAVRGGDVVTRVVETMGSINASSRKIVD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDD 420 Query: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SV VD GS LVE+AG TM E+VASV+RVTDIVGEISSASQEQ +GI EV A+TQ+D+ Sbjct: 421 SVVNVDAGSALVEEAGTTMREIVASVKRVTDIVGEISSASQEQRSGIEEVSHAVTQLDDA 480 Query: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT 540 TQQNAALVEQAAAAAQSL++QA +L +V +F +D + A AP +PA PV+P Sbjct: 481 TQQNAALVEQAAAAAQSLEEQAVSLTQVVAQFRLD-AHALRAPAMVARVEPAVAPVKPVA 539 Query: 541 PPATPAPALRKPAAPQ--PARPALAASKGAAPKAAP---KTAAAQPAKAE-----APAAK 590 APA K AP+ ARP+ A+K P + AAA+P + APAA Sbjct: 540 LATPMAPASPKDEAPRRGAARPSTEAAKPKLTSRKPPVLRKAAAKPVERTEKSLAAPAAI 599 Query: 591 PTGKSPSR-LPAGEDEGDWETF 611 P + ++ L A D DWETF Sbjct: 600 PASLAKAKPLVAAGDNADWETF 621 >D8ND65.1 D8ND65_RALSO Methyl-accepting chemotaxis transducer transmembrane protein Length = 619 Score = 638 bits (1645), Expect = 0.0, Method: Compositional matrix adjust. Identities = 360/630 (57%), Positives = 437/630 (69%), Gaps = 30/630 (4%) Query: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 M +LSF +KLWLPL SLIAL +S+F+A R IR+EERK +L ++ AL+LVK Y Sbjct: 1 MSKLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERKNNLVSVTSMALNLVKQYDD 60 Query: 61 LADSGALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDP 120 LA G L+KE AQ+ A + +SLRY DGYF+I+ S ++VMHPIK E GKD T FKD Sbjct: 61 LARGGVLTKEAAQQQALERFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQTGFKDA 120 Query: 121 AGNNLFVEITKAGSKPEGSFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 GN+++V +T A +P G F Y+WP VG VPKT+F Y+PWDW +TGAYMDDIN Sbjct: 121 QGNSVYVNLTSAARQPNGGFTSYVWPHVGGTALVPKTAFAQRYEPWDWVFSTGAYMDDIN 180 Query: 181 AAFLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 AAF+ +L++ L LV L V NRG+ RT+GGDPA AAEVANRIA GDL+ I Sbjct: 181 AAFMTSLYESGGLLLLAGTVLVLLAGVANRGVQRTLGGDPAYAAEVANRIAGGDLSVEIA 240 Query: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 T P D SLLYA+ MR +L+ T+ IK ++ TI +A++EIASGNLDLS RTEQQA S+E Sbjct: 241 TRPDDRDSLLYAMGRMRGALVQTLGRIKGASETIGTATREIASGNLDLSSRTEQQASSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 ETASAMEEL +TV+QNADNA QANQLA SAS+VA++GG VVS+VV+TM I SSRKI D Sbjct: 301 ETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDD 420 Query: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SV VD GS LVE+AG TM E+VASVRRVTDIVGEI++ASQEQ +GI EV A+TQ+D+ Sbjct: 421 SVTNVDAGSTLVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDA 480 Query: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT 540 TQQNAALVEQAAAAAQSLQ+QA +L +V +F +D + +++ +A RPV Sbjct: 481 TQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPTMSAVRSVVAKAEPTIARPVPKAA 540 Query: 541 -------------------PPATPAPALRKPAAPQPARPALAASKGAAPKAAPKTAAAQP 581 P P+P KP QP + + A + A P AP T P Sbjct: 541 EPAPAVPVPVAAPAQAPRREPVKPSPQAAKPKL-QPRKAPVLAKRAARPDTAPATV---P 596 Query: 582 AKAEAPAAKPTGKSPSRLPAGEDEGDWETF 611 A + P +P L A D+ DWETF Sbjct: 597 AASPKPLHQP-------LVAAGDDADWETF 619 >D8NKF7.1 D8NKF7_RALSO Methyl-accepting chemotaxis transducer transmembrane protein Length = 624 Score = 637 bits (1643), Expect = e-180, Method: Compositional matrix adjust. Identities = 369/637 (57%), Positives = 442/637 (69%), Gaps = 39/637 (6%) Query: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 M +LSF +KLWLPL SLIAL +S+F A R IR+EERK L ++ AL+LVK Y Sbjct: 1 MSKLSFRQKLWLPLAFSLIALTLLSVFYAYQARGIRIEERKNTLVSVTSMALNLVKQYDD 60 Query: 61 LADSGALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDP 120 L G L+KE+AQK A + ++LRY DGYF+I+ S ++VMHPIK E GKD + FKD Sbjct: 61 LVRGGVLTKEEAQKQALERFRALRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQSGFKDA 120 Query: 121 AGNNLFVEITKAGSKPEGSFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 GN+++V +T A + G F Y+WP VG E VPKT++ + Y+PWDW +TGAYMDDIN Sbjct: 121 QGNSVYVNLTGAARQSNGGFTSYVWPHVGGTELVPKTAYALRYEPWDWVFSTGAYMDDIN 180 Query: 181 AAFLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 AAF+ +L++ L LV L V NRG+ R +GGDP+ AAEVANRIA GDL+ I Sbjct: 181 AAFMTSLYESGGLLLLAGTVLVLLAGVANRGLQRALGGDPSYAAEVANRIAGGDLSVEIT 240 Query: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 T P D SLLYA+ MR +L+ TI I+ ++ TI +A++EIASGNLDLS RTEQQA S+E Sbjct: 241 TRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 ETASAMEEL +TV+QNADNA QANQLA SAS+VA++GG VVS+VV+TM I SSRKI D Sbjct: 301 ETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDD 420 Query: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SV VD GS LVE+AG TM E+VASVRRVTDIVGEI++ASQEQ +GI EV A+TQ+D+ Sbjct: 421 SVTNVDAGSTLVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDA 480 Query: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT 540 TQQNAALVEQAAAAAQSLQ+QA +L +V +F +D PTAP PA R V T Sbjct: 481 TQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLD-------PTAPTV--PAVRHVVART 531 Query: 541 PP---ATPAP-----------------ALRKPAAPQP--ARPALAASKGAAPKAAPKTA- 577 P A PAP A R P P P A+P L K AP A +TA Sbjct: 532 EPVIAAAPAPRAVEAAPVAPVAVPAQAARRAPVKPSPEAAKPKLQPRK--APVLAKRTAK 589 Query: 578 ---AAQPAKAEAPAAKPTGKSPSRLPAGEDEGDWETF 611 A P AE+P +P P L A D+ DWETF Sbjct: 590 PAVAPAPVPAESP--RPDKPKPQPLVAAGDDADWETF 624 >D8NUX5.1 D8NUX5_RALSO Methyl-accepting chemotaxis transducer transmembrane protein Length = 617 Score = 633 bits (1632), Expect = e-179, Method: Compositional matrix adjust. Identities = 371/628 (59%), Positives = 442/628 (70%), Gaps = 28/628 (4%) Query: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 M +LSF +KLWLPL SLIAL +S+F+A R IR+EERK +L ++ AL+LVK Y Sbjct: 1 MSKLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERKNNLVSVTSMALNLVKQYDD 60 Query: 61 LADSGALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDP 120 L G L++E+AQK A +SLRY DGYF+I+ S ++VMHPIK E GKD T FKD Sbjct: 61 LVRGGILTREEAQKQALDRFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQTGFKDA 120 Query: 121 AGNNLFVEITKAGSKPEGSFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 GN+++V +T A +P G F Y+WP VG E VPKT++ Y+PWDW +TGAYMDDIN Sbjct: 121 QGNSVYVNLTSAARQPSGGFTSYVWPHVGGTEQVPKTAYAQRYEPWDWVFSTGAYMDDIN 180 Query: 181 AAFLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 AAF+ +L+ A L LV L V NRG+ R +GGDPA AAEVANRIA GDL+ I Sbjct: 181 AAFMTSLYGAAGLLLLAGTVLVVLAGVANRGLQRALGGDPAYAAEVANRIAGGDLSVEIA 240 Query: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 T P D SLLYA+ MR +L+ TI I+ ++ TI +A++EIASGNLDLS RTEQQA S+E Sbjct: 241 TRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 ETASAMEEL +TV+QNADNA QANQLA SAS+VA++GG VVS+VV TM I SSRKI D Sbjct: 301 ETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVDTMGSINASSRKIVD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIKTLIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKTLIDD 420 Query: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SV VD GS LVE+AG TM E+VASVRRVTDIVGEI++ASQEQ +GI EV A+TQ+D+ Sbjct: 421 SVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDA 480 Query: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT 540 TQQNAALVEQAAAAAQSLQ+QA +L +V +F +D PT P A + V+PT Sbjct: 481 TQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLD-------PTMP-AVRSVVAKVEPTI 532 Query: 541 --------------PPATPAPALRK-PAAPQP--ARPALAASKGAAPKAAPKTAAAQPAK 583 P A PA A+R+ P P P RP L K AP A + A A Sbjct: 533 APPAPKAAEAGPVAPVAVPARAVRREPVKPSPEATRPKLQPRK--APVLAKRAAKPAAAL 590 Query: 584 AEAPAAKPTGKSPSRLPAGEDEGDWETF 611 A PAA P KS + AG D+ DWETF Sbjct: 591 APVPAASPKPKSQPLVAAG-DDADWETF 617 >E2SZP9.1 E2SZP9_9RALS Chemotaxis sensory transducer Length = 618 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 361/622 (58%), Positives = 441/622 (70%), Gaps = 15/622 (2%) Query: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 M +LSF +KLWLPLV+SL+AL IS+F+A R IR+EERK +L ++ A++LVK Y Sbjct: 1 MSKLSFRQKLWLPLVISLVALTLISVFNAYQAREIRVEERKNNLVSVTTMAMNLVKQYDD 60 Query: 61 LADSGALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDP 120 L +G LSK+ AQK A K+LRY DGYF+I++S ++VMHPIK E GKD + FKD Sbjct: 61 LTKNGTLSKDAAQKQAIDRFKALRYDKDGYFTITSSNNVVVMHPIKPEFIGKDQSGFKDA 120 Query: 121 AGNNLFVEITKAGSKPEGSFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 GN ++ +T A P+G F Y+WPKVG +PVPKT+F + Y+PWDW +TG YMDDIN Sbjct: 121 QGNAVYAGLTTAAKDPKGGFTSYVWPKVGGTDPVPKTAFAMRYEPWDWVFSTGVYMDDIN 180 Query: 181 AAFLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 AAF+ +L+Q L V LV L V NR + RT+GGDPA AA+VANRIA GDLT I Sbjct: 181 AAFMTSLYQTGGLLLLVGGLLVLLGSVANRSLQRTLGGDPAYAADVANRIAGGDLTVEIA 240 Query: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 T D+ SLLYA+ MR +L+ TI IK ++ TI +A++EIASGNLDLS RTEQQA S+E Sbjct: 241 TRADDNDSLLYAMSRMRGALVDTIGRIKGASETIGTATREIASGNLDLSSRTEQQASSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 ETASAME+L +TV+QNADNA+QANQLA SAS+VA++GG VV++VV+TM I SSRKI D Sbjct: 301 ETASAMEQLMSTVQQNADNAQQANQLAASASDVAVRGGDVVTRVVETMGSINASSRKIVD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDD 420 Query: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SV VD GS LVE+AG TM E+VASV+RVTDIVGEISSASQEQ +GI EV A+TQ+D+ Sbjct: 421 SVVNVDAGSALVEEAGTTMREIVASVKRVTDIVGEISSASQEQRSGIEEVSHAVTQLDDA 480 Query: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT 540 TQQNAALVE+AAAAAQSL++QA +L +V +F +D + A AP +P PV+P Sbjct: 481 TQQNAALVEEAAAAAQSLEEQAVSLTQVVAQFRLD-AHALRAPAMVARVEPEVVPVKPVA 539 Query: 541 PPATPAPAL----RKPAAP--QPARPALAASKGAAPKAAPKTAAAQPAKAEAPAAKPTGK 594 A AP R+ A P + ARP L + K P K AA + E A P Sbjct: 540 GAAPAAPKEEAPRREAAKPSTEAARPKLTSRK---PPVLRKAAAKPVERTEKKPAAPAAI 596 Query: 595 SPSR-----LPAGEDEGDWETF 611 S L A + DWETF Sbjct: 597 PASLTKAKPLVAAGGDADWETF 618 >Q8Y089.1 Q8Y089_RALSO Probable methyl-accepting chemotaxis transducer transmembrane protein Length = 629 Score = 628 bits (1620), Expect = e-178, Method: Compositional matrix adjust. Identities = 365/626 (58%), Positives = 439/626 (70%), Gaps = 18/626 (2%) Query: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 M +LSF +KLWLPL SLIAL +S+F+A R IR+EER+ +L ++ AL+LVK Y Sbjct: 7 MSKLSFRQKLWLPLAFSLIALTLMSVFNAYQARGIRIEERRNNLVSVTSMALNLVKQYDD 66 Query: 61 LADSGALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDP 120 LA G L+KE AQ+ A +SLRY DGYF+I+ S ++VMHPIK E GKD T FKD Sbjct: 67 LARGGVLTKEAAQQQALDRFRSLRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQTGFKDA 126 Query: 121 AGNNLFVEITKAGSKPEGSFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 GN+++V +T A +P G F Y+WP VG VPKT+F Y+PWDW +TGAYMDDIN Sbjct: 127 QGNSVYVNLTSAARQPNGGFTSYVWPHVGGTALVPKTAFAQRYEPWDWVFSTGAYMDDIN 186 Query: 181 AAFLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 AAF+ +L++ L A LV L V NRG+ R +GGDPA AAEVANRIA GDL+ I Sbjct: 187 AAFMTSLYESGGLLLLAGAVLVLLAGVANRGLQRALGGDPAYAAEVANRIAGGDLSVEIA 246 Query: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 T P D SLLYA+ MR +L+ TI I+ ++ TI +A++EIASGNLDLS RTEQQA S+E Sbjct: 247 TRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLE 306 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 ETASAMEEL +TV+QNADNA QANQLA SAS+VA++GG VVS+VV+TM I SSRKI D Sbjct: 307 ETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVD 366 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIK LIDD Sbjct: 367 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDD 426 Query: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SV VD GS LVE+AG TM E+VASVRRVTDIVGEI++ASQEQ +GI EV A+TQ+D+ Sbjct: 427 SVTNVDAGSALVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDA 486 Query: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVD-----------GSQASIAPTAPQAA 529 TQQNAALVEQAAAAAQSLQ+QA +L +V +F +D ++ +IAP P+AA Sbjct: 487 TQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLDPTMSAVRSVVAKAEPTIAPPVPKAA 546 Query: 530 KPATRPVQPTTPPATPAPAL--RKPAAPQP--ARPALAASKGAAPKAAPKTAAAQPAKAE 585 + P P R+P P P ARP L K AP A + A A A Sbjct: 547 EAGPATPVPVAAPVAAPAQAPRREPVKPSPEAARPKLQPRK--APVLAKRAARPDTAPAT 604 Query: 586 APAAKPTGKSPSRLPAGEDEGDWETF 611 PAA P + AG D+ DWETF Sbjct: 605 VPAASPKPLHQPLVAAG-DDADWETF 629 >C6BG84.1 C6BG84_RALP1 Methyl-accepting chemotaxis sensory transducer with Cache sensor Length = 618 Score = 627 bits (1617), Expect = e-177, Method: Compositional matrix adjust. Identities = 360/639 (56%), Positives = 440/639 (68%), Gaps = 49/639 (7%) Query: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 M +LSF +KLWLPLV+SL+AL IS+F+A R IR+EERK +L ++ A++LVK Y Sbjct: 1 MSKLSFRQKLWLPLVISLVALTLISVFNAYQAREIRMEERKNNLVSVTTMAMNLVKQYDD 60 Query: 61 LADSGALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDP 120 L +G LSK+ AQK A K+LRY DGYF+I++S ++VMHPIK E GKD + FKD Sbjct: 61 LTKNGTLSKDAAQKQALDRFKALRYDKDGYFTITSSNNVVVMHPIKPEFIGKDQSGFKDA 120 Query: 121 AGNNLFVEITKAGSKPEGSFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 GN ++V ++ A P+G F Y+WPKVG +PVPKT+F + Y+PWDW +TG YMDDIN Sbjct: 121 QGNAVYVGLSNAAKDPKGGFTSYVWPKVGGTDPVPKTAFAMRYEPWDWVFSTGVYMDDIN 180 Query: 181 AAFLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 AAF+ +L+Q L V LV L V NR + RT+GGDPA AA+VANRIA GDLT I Sbjct: 181 AAFMTSLYQTGGLLLLVGGLLVLLGSVANRSLQRTLGGDPAYAADVANRIAGGDLTVEIA 240 Query: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 T D+ SLLYA+ MR +L+ TI IK ++ TI +A++EIASGNLDLS RTEQQA S+E Sbjct: 241 TRADDNDSLLYAMSRMRGALVDTIGRIKGASETIGTATREIASGNLDLSSRTEQQASSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 ETASAME+L +TV+QNADNA+QANQLA SAS+VA++GG VV++VV+TM I SSRKI D Sbjct: 301 ETASAMEQLMSTVQQNADNAQQANQLAASASDVAVRGGDVVTRVVETMGSINASSRKIVD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDD 420 Query: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SV VD GS LVE+AG TM E+VASV+RVTDIVGEISSASQEQ +GI EV A+TQ+D+ Sbjct: 421 SVVNVDAGSALVEEAGTTMREIVASVKRVTDIVGEISSASQEQRSGIEEVSHAVTQLDDA 480 Query: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQ------------- 527 TQQNAALVE+AAAAAQSL++QA +L +V +F +D + A AP Sbjct: 481 TQQNAALVEEAAAAAQSLEEQAVSLTQVVAQFRLD-AHALRAPAMVARVEPVVAPVKPVA 539 Query: 528 ---------------AAKPATRPVQPTTPPATPAPALRKPAAPQPARPALAASKGAAPKA 572 AAKP+T +P P P LRK A A+P K A A Sbjct: 540 AAAPAAPKEEAPRRGAAKPSTEAAKPKLTSRKP-PVLRKAA----AKPVERTEKSPAAPA 594 Query: 573 APKTAAAQPAKAEAPAAKPTGKSPSRLPAGEDEGDWETF 611 A + + AKP L A D+ DWETF Sbjct: 595 AIPASLTK--------AKP-------LVAAGDDADWETF 618 >B5SM59.1 B5SM59_RALSO Methyl-accepting chemotaxis transducer protein Length = 632 Score = 626 bits (1615), Expect = e-177, Method: Compositional matrix adjust. Identities = 367/643 (57%), Positives = 441/643 (68%), Gaps = 43/643 (6%) Query: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 M +LSF +KLWLPL SLIAL +S+F A R IR+EERK +L ++ AL+LVK Y Sbjct: 1 MSKLSFRQKLWLPLAFSLIALTLLSVFYAYQARGIRIEERKNNLVSVTSMALNLVKQYDD 60 Query: 61 LADSGALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDP 120 L G L+KE+AQK A + ++LRY DGYF+I+ S ++VMHPIK E GKD + FKD Sbjct: 61 LVRGGVLTKEEAQKQALERFRALRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQSGFKDA 120 Query: 121 AGNNLFVEITKAGSKPEGSFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 GN+++V +T A +P G F Y+WP VG E VPKT++ + Y+PWDW +TGAYMDDIN Sbjct: 121 QGNSVYVNLTGAARQPNGGFTSYVWPHVGGTELVPKTAYALRYEPWDWVFSTGAYMDDIN 180 Query: 181 AAFLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 AAF+ +L++ L LV L V NRG+ RT+GGDPA AAEVANRIA GDL+ I Sbjct: 181 AAFMTSLYESGGLLLLAGTVLVLLAGVANRGLQRTLGGDPAYAAEVANRIAGGDLSVEIA 240 Query: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 T P D SLLYA+ MR +L+ TI I+ ++ TI +A++EIASGNLDLS RTEQQA S+E Sbjct: 241 TRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLE 300 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 ETASAMEEL +TV+QNADNA QANQLA SAS+VA++GG VVS+VV+TM I SSRKI D Sbjct: 301 ETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVD 360 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIK LIDD Sbjct: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDD 420 Query: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SV VD GS LVE+AG TM E+VASVRRVTDIVGEI++ASQEQ +GI EV A+TQ+D+ Sbjct: 421 SVTNVDAGSTLVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDA 480 Query: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT 540 TQQNAALVEQAAAAAQSLQ+QA +L +V +F +D PT P PA R V Sbjct: 481 TQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLD-------PTMPTV--PAVRHVVAKA 531 Query: 541 PP---------------ATPAPA-------------LRKPAAP--QPARPALAASKGAAP 570 P A+ AP R+P P + A+P L K AP Sbjct: 532 EPVIAAPAARAVEAASVASVAPVSVPAQAAQAAQAARREPVKPSAEAAKPKLQPRK--AP 589 Query: 571 KAAPKTA--AAQPAKAEAPAAKPTGKSPSRLPAGEDEGDWETF 611 A +TA A PA A + KP P L A D DWETF Sbjct: 590 VLAKRTAKPAVAPAPVPAESPKPDKPKPQPLVAAGDAADWETF 632 >A3RW58.1 A3RW58_RALSO Probable transmembrane methyl-accepting chemotaxis protein Length = 644 Score = 625 bits (1613), Expect = e-177, Method: Compositional matrix adjust. Identities = 367/643 (57%), Positives = 441/643 (68%), Gaps = 43/643 (6%) Query: 1 MGQLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGA 60 M +LSF +KLWLPL SLIAL +S+F A R IR+EERK +L ++ AL+LVK Y Sbjct: 13 MSKLSFRQKLWLPLAFSLIALTLLSVFYAYQARGIRIEERKNNLVSVTSMALNLVKQYDD 72 Query: 61 LADSGALSKEDAQKLAKQAMKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLTNFKDP 120 L G L+KE+AQK A + ++LRY DGYF+I+ S ++VMHPIK E GKD + FKD Sbjct: 73 LVRGGVLTKEEAQKQALERFRALRYDKDGYFTITRSDNVVVMHPIKPEFIGKDQSGFKDA 132 Query: 121 AGNNLFVEITKAGSKPEGSFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDIN 180 GN+++V +T A +P G F Y+WP VG E VPKT++ + Y+PWDW +TGAYMDDIN Sbjct: 133 QGNSVYVNLTGAARQPNGGFTSYVWPHVGGTELVPKTAYALRYEPWDWVFSTGAYMDDIN 192 Query: 181 AAFLRTLWQMALLFAAVSAALVALVIVINRGILRTIGGDPAQAAEVANRIAQGDLTPNIE 240 AAF+ +L++ L LV L V NRG+ RT+GGDPA AAEVANRIA GDL+ I Sbjct: 193 AAFMTSLYESGGLLLLAGTVLVLLAGVANRGLQRTLGGDPAYAAEVANRIAGGDLSVEIA 252 Query: 241 TAPGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIE 300 T P D SLLYA+ MR +L+ TI I+ ++ TI +A++EIASGNLDLS RTEQQA S+E Sbjct: 253 TRPDDRDSLLYAMGRMRGALVQTIGRIRGASETIGTATREIASGNLDLSSRTEQQASSLE 312 Query: 301 ETASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIAD 360 ETASAMEEL +TV+QNADNA QANQLA SAS+VA++GG VVS+VV+TM I SSRKI D Sbjct: 313 ETASAMEELMSTVQQNADNANQANQLAVSASDVAVRGGDVVSRVVETMGSINASSRKIVD 372 Query: 361 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDD 420 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRSA+AAKEIK LIDD Sbjct: 373 IIGVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDD 432 Query: 421 SVAKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEG 480 SV VD GS LVE+AG TM E+VASVRRVTDIVGEI++ASQEQ +GI EV A+TQ+D+ Sbjct: 433 SVTNVDAGSTLVEEAGTTMREIVASVRRVTDIVGEITAASQEQRSGIEEVSHAVTQLDDA 492 Query: 481 TQQNAALVEQAAAAAQSLQDQAATLAGLVGRFHVDGSQASIAPTAPQAAKPATRPVQPTT 540 TQQNAALVEQAAAAAQSLQ+QA +L +V +F +D PT P PA R V Sbjct: 493 TQQNAALVEQAAAAAQSLQEQADSLTQVVAQFRLD-------PTMPTV--PAVRHVVAKA 543 Query: 541 PP---------------ATPAPA-------------LRKPAAP--QPARPALAASKGAAP 570 P A+ AP R+P P + A+P L K AP Sbjct: 544 EPVIAAPAARAVEAASVASVAPVSVPAQAAQAAQAARREPVKPSAEAAKPKLQPRK--AP 601 Query: 571 KAAPKTA--AAQPAKAEAPAAKPTGKSPSRLPAGEDEGDWETF 611 A +TA A PA A + KP P L A D DWETF Sbjct: 602 VLAKRTAKPAVAPAPVPAESPKPDKPKPQPLVAAGDAADWETF 644