BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0016.p (1158 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J043.1 D8J043_HERSS ATP-dependent DNA helicase protein EC=3.6.1.- 2281 0.0 A4G315.1 A4G315_HERAR Putative ATP-dependent exoDNAse (Exonuclea... 1295 0.0 A6SVL8.1 A6SVL8_JANMA Uncharacterized conserved protein 1282 0.0 F1W2B5.1 F1W2B5_9BURK Putative uncharacterized protein 1237 0.0 Q8Y054.1 Q8Y054_RALSO Probable homologous recombinational repair... 859 0.0 D8N403.1 D8N403_RALSO Putative helicase, uvrD subfamily 858 0.0 D8NUU1.1 D8NUU1_RALSO Putative helicase, uvrD subfamily 856 0.0 D8NKC2.1 D8NKC2_RALSO Putative helicase, uvrD subfamily 848 0.0 B2U9S4.1 B2U9S4_RALPJ UvrD/REP helicase 846 0.0 B5SM24.1 B5SM24_RALSO Homologous recombinational repair protein,... 844 0.0 >D8J043.1 D8J043_HERSS ATP-dependent DNA helicase protein EC=3.6.1.- Length = 1158 Score = 2281 bits (5912), Expect = 0.0, Method: Compositional matrix adjust. Identities = 1142/1158 (98%), Positives = 1147/1158 (99%) Query: 1 VSAAERAPAAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGA 60 +SAAERAPAAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGA Sbjct: 1 MSAAERAPAAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGA 60 Query: 61 QAPELLAITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARG 120 QAPELLAITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARG Sbjct: 61 QAPELLAITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARG 120 Query: 121 LYERILSSEQSLSIDTFHSWFARLLQIAPLASGVPHGYTLTEKNGELLDEAYRRFMQTLR 180 LYERILSSEQSLSIDTFHSWFARLLQIAPLASGVP+GYTLTEKNGELLDEAYRRFMQTLR Sbjct: 121 LYERILSSEQSLSIDTFHSWFARLLQIAPLASGVPYGYTLTEKNGELLDEAYRRFMQTLR 180 Query: 181 EPEGAHIKAALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDDQEDEEGAEEHAAPAP 240 EPEGAHIKAALLELYELAGDFNARQLLDAFIDKRAEWWAATQDD+QE EEGAEEHAAPAP Sbjct: 181 EPEGAHIKAALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDEQEGEEGAEEHAAPAP 240 Query: 241 LRWLQALCGADAQRDARLSLWEEHALVARPSQLAILLGQGGSANQARAVAIESALSAGPA 300 LRWLQALCGADAQRDARLSLWEEHALVAR SQLAILLGQGGSANQARAVAIESALSAGPA Sbjct: 241 LRWLQALCGADAQRDARLSLWEEHALVARASQLAILLGQGGSANQARAVAIESALSAGPA 300 Query: 301 LEHFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALAAFEAEFNAVGEALRKL 360 LEHFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAAL AFE EFNAVGEALRKL Sbjct: 301 LEHFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALVAFEMEFNAVGEALRKL 360 Query: 361 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ 420 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ Sbjct: 361 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ 420 Query: 421 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 480 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP Sbjct: 421 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 480 Query: 481 RVFVAAREMLRAQGAAILRANQTRRNATAVVDVLNRSFVMGGNPLFSQQTTLGLAGGEVW 540 RVFVAAREMLRAQGAAILRANQTRRNATAVVDVLNRSFVMGGNPLF+QQTTLGLAGGEVW Sbjct: 481 RVFVAAREMLRAQGAAILRANQTRRNATAVVDVLNRSFVMGGNPLFAQQTTLGLAGGEVW 540 Query: 541 RLPLARPDDGAENVSSADPDAASAAPEGEQEVIPWRNPLTTPRGEEDDARRLLEGQALAQ 600 RLPLARPDDGAENVSSAD DAASAAPEGE EVIPWRNPLTTPRGEEDDARRLLEG ALAQ Sbjct: 541 RLPLARPDDGAENVSSADTDAASAAPEGEPEVIPWRNPLTTPRGEEDDARRLLEGLALAQ 600 Query: 601 ALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDKRGGLLES 660 ALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDKRGGLLES Sbjct: 601 ALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDKRGGLLES 660 Query: 661 LEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWWQQLQAM 720 LEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWW+QLQAM Sbjct: 661 LEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWWRQLQAM 720 Query: 721 QQEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVAHYAQHASPLTRSQTLG 780 QQEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVA YAQHASPLTRSQTLG Sbjct: 721 QQEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVARYAQHASPLTRSQTLG 780 Query: 781 NIAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEASVDASADAVRILTVHSAK 840 NIAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEASVDAS DAVRILTVHSAK Sbjct: 781 NIAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEASVDASGDAVRILTVHSAK 840 Query: 841 GLEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEET 900 GLEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEET Sbjct: 841 GLEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEET 900 Query: 901 LRTQEDWNLLYVAVTRAKQLLLVSGVAGTRGAGAGGVVQGSWYQRLFASDAPVREISEEA 960 LRTQEDWNLLYVAVTRAKQLLLVSGVAGTRGA AGGVVQGSWYQRLFASDAPVREISEEA Sbjct: 901 LRTQEDWNLLYVAVTRAKQLLLVSGVAGTRGADAGGVVQGSWYQRLFASDAPVREISEEA 960 Query: 961 VHGAEAADIEERFSLALFDPRPLPMSLFGAPADDPQDAVPALTADGALVSTDAIDEGVAL 1020 VHGAEAA IEERFSLALFDPRPLPMSLFGAPADDPQDAVPALTADGALVSTDAIDEGVAL Sbjct: 961 VHGAEAAAIEERFSLALFDPRPLPMSLFGAPADDPQDAVPALTADGALVSTDAIDEGVAL 1020 Query: 1021 HALLERLTHGHAWPLHVPSASVLVRWLGISAEMAQVVHAQAREVLAQPQLERFFNPALHR 1080 HALLERLTHGHAWPLHVPSASVLVRWLGISAEMAQVVHAQAREVLAQPQLERFFNPALHR Sbjct: 1021 HALLERLTHGHAWPLHVPSASVLVRWLGISAEMAQVVHAQAREVLAQPQLERFFNPALHR 1080 Query: 1081 WARNEMEIVTPNGLMRLDRVVMFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFS 1140 WARNEMEIVTPNGLMRLDRVVMFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFS Sbjct: 1081 WARNEMEIVTPNGLMRLDRVVMFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFS 1140 Query: 1141 DKQIRSALITAEGALIEH 1158 DKQIRSALITAEGALIEH Sbjct: 1141 DKQIRSALITAEGALIEH 1158 >A4G315.1 A4G315_HERAR Putative ATP-dependent exoDNAse (Exonuclease V) beta subunit RecB Length = 1096 Score = 1295 bits (3351), Expect = 0.0, Method: Compositional matrix adjust. Identities = 702/1156 (60%), Positives = 826/1156 (71%), Gaps = 76/1156 (6%) Query: 7 APAAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPELL 66 AP AYE+NG DA F ACDP SVVVEACAGSGKTWLLVAR+LRLLLAG + +L Sbjct: 10 APRAYEINGVQADAERFVAIACDPARSVVVEACAGSGKTWLLVARVLRLLLAGTEPAAIL 69 Query: 67 AITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERIL 126 AITFTRKAAQEMRERL++LLHEL L EA LLRERGVA+ +L LLPLARGLYER+L Sbjct: 70 AITFTRKAAQEMRERLMQLLHELTLKPEADVLTLLRERGVADHELLALLPLARGLYERVL 129 Query: 127 SSEQSLSIDTFHSWFARLLQIAPLASGVPHGYTLTEKNGELLDEAYRRFMQTLREPEGAH 186 S Q+LSIDTFHSWFARL+QIAPLASGVPHGY LTE GEL +AY RFMQT+ E + Sbjct: 130 RSPQALSIDTFHSWFARLVQIAPLASGVPHGYALTESTGELSSDAYSRFMQTVNEADNQE 189 Query: 187 IKAALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDDQEDEEGAEEHAAPAPLRWLQA 246 +K AL+ LY GD NAR LLDAF KRAEWWA+ Q+ + PL WL Sbjct: 190 VKDALIALYAQVGDSNARNLLDAFAGKRAEWWASVQNGE--------------PLEWLTE 235 Query: 247 LCGADAQRDARLSLWEEHALVARPSQLAILLGQGGSANQARAVAIESALSAGPALEHFDA 306 LCG DA+ DARL+LW + VAR Q+A LLGQG + NQ RA AIE ALS+G ALE+F A Sbjct: 236 LCGEDAEVDARLALWSDEKTVARIGQIAWLLGQGSAVNQERATAIEKALSSGAALENFAA 295 Query: 307 LYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALAAFEAEFNAVGEALRKLQGRSKE 366 L ++FFD K RKN K L AL+ + D + AFE EF AVGEAL+ + RS E Sbjct: 296 LTNEFFDANGKFRKNRTTKDLTKALLGNLG---DEGVYAFEVEFEAVGEALKTILRRSME 352 Query: 367 KDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQTRLDAR 426 V+ LN ALFT G AYL YQ VKAEQRV DFADLEWQAYRLL NE AAYLQ+RLDAR Sbjct: 353 PAVIALNRALFTVGAAYLETYQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDAR 412 Query: 427 YKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEPRVFVAA 486 Y+H+LLDEFQDTNPLQW IV+ WL+AYG DA +PS+FVVGDPKQSIYRFRRAEPRVF AA Sbjct: 413 YRHVLLDEFQDTNPLQWSIVQAWLNAYGDDADKPSMFVVGDPKQSIYRFRRAEPRVFSAA 472 Query: 487 REMLRAQGAAILRANQTRRNATAVVDVLNRSFVMGGNPLFSQQTTLGLAGGEVWRLPLAR 546 +E L AQGA LR NQTRRNA +VDVLN SFV NP++ QTTL + G VW+LPL + Sbjct: 473 KETLVAQGADFLRTNQTRRNAAGIVDVLNASFV--ANPIYQPQTTLEQSPGAVWQLPLVQ 530 Query: 547 PDDGAENVSSADPDAASAAPEGEQEVIPW-----RNPLTTPRGEEDDARRLLEGQALAQA 601 D +QE + W R+PLTTPR EE+DARRL EG+A+A A Sbjct: 531 QD--------------------KQEKVVWSPVQLRDPLTTPREEEEDARRLEEGRAVALA 570 Query: 602 LLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDKRGGLLESL 661 +L+A +E+ +S RW D+MLLV+KRTHL AYE ALR AGIPF SDKRGGLLESL Sbjct: 571 ILQARKEL--------KSERWSDVMLLVKKRTHLRAYERALREAGIPFASDKRGGLLESL 622 Query: 662 EIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWWQQLQAMQ 721 E+ADLIALL FLITP+D ALAHVLKSPI++A DD+L+ +A R + WW +LQA Sbjct: 623 EVADLIALLNFLITPHDNLALAHVLKSPIMAAGDDELIALAERREKT----WWLRLQAEV 678 Query: 722 QEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVAHYAQHASPLTRSQTLGN 781 E +S AL+RA LL++WL AP LPVHDLLD ILH+G++VA YAQ ASPL R Q LGN Sbjct: 679 TE-LSSPALLRAAGLLEKWLHLAPRLPVHDLLDRILHEGDVVARYAQTASPLVRGQVLGN 737 Query: 782 IAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEASVDASADAVRILTVHSAKG 841 I AF EL+LN+DAGRYPSLPKFIDALR LQ+SA DAPDEA +DA+ DAVRILT+H AKG Sbjct: 738 IEAFTELALNLDAGRYPSLPKFIDALRRLQKSADSDAPDEADIDAALDAVRILTIHGAKG 797 Query: 842 LEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEETL 901 LEAP+V +LDANHSD D++G+LCAWPQD DAPTHFS FGR++ERG+ARD LF EEE L Sbjct: 798 LEAPIVVLLDANHSDGARDDVGVLCAWPQDRDAPTHFSVFGRQAERGAARDTLFAEEEQL 857 Query: 902 RTQEDWNLLYVAVTRAKQLLLVSGVAGTRGAGAGGVVQGSWYQRLFASDAPVREISEEAV 961 + QEDWNLLYVA TRAK LL+VSGVA R GV G WY R F PV+ +A Sbjct: 858 KQQEDWNLLYVATTRAKNLLIVSGVADNRSTTVNGVADGRWYAR-FQGAQPVQ---PDAQ 913 Query: 962 HGAEAADIEERFSLALFDPRPLPMSLFGAPADDPQDAVPALTADGALVSTDAIDEGVALH 1021 A AA E F L +F+P LP AP +P A+ S+ IDEG+ALH Sbjct: 914 AAAAAATGETEFFLPIFNPPALP-----APQIEPT----------AIFSSAEIDEGIALH 958 Query: 1022 ALLERLTHGHAWPLHVPSASVLVRWLGISAEMAQVVHAQAREVLAQPQLERFFNPALHRW 1081 AL+E LT AWP+ + + +++ +WL + EMA+ + QA +LAQP+L RFF+PA HR+ Sbjct: 959 ALMELLTPPQAWPITMHAPALIAKWLACTHEMAETISGQASVILAQPELARFFDPAQHRF 1018 Query: 1082 ARNEMEIVTPNGLMRLDRVVMFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFSD 1141 ARNEME+V+ G+ R DR VMFDDELW++DYKR LL+SERA YAAQL RYR A VF D Sbjct: 1019 ARNEMEVVSSAGVARFDRAVMFDDELWILDYKRNLLESERAAYAAQLERYRVAAQQVFPD 1078 Query: 1142 KQIRSALITAEGALIE 1157 +IRS LIT +G L E Sbjct: 1079 VRIRSGLITVDGRLTE 1094 >A6SVL8.1 A6SVL8_JANMA Uncharacterized conserved protein Length = 1083 Score = 1282 bits (3317), Expect = 0.0, Method: Compositional matrix adjust. Identities = 688/1150 (59%), Positives = 821/1150 (71%), Gaps = 70/1150 (6%) Query: 8 PAAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPELLA 67 P AYE+NG DAA F ACDP SVVVEACAGSGKTWLLVAR+LRLLLAG + +LA Sbjct: 3 PRAYEINGAQSDAAHFVARACDPSRSVVVEACAGSGKTWLLVARVLRLLLAGTEPAAILA 62 Query: 68 ITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERILS 127 ITFTRKAAQEMRERL++LLHEL L +A ALLRERG+AE L LP ARGLYE++L Sbjct: 63 ITFTRKAAQEMRERLMQLLHELTLKPDAEVLALLRERGIAEQALAETLPQARGLYEQVLR 122 Query: 128 SEQSLSIDTFHSWFARLLQIAPLASGVPHGYTLTEKNGELLDEAYRRFMQTLREPEGAHI 187 S Q+LSIDTFHSWFARL+QIAPLASGVPHGY+LTE GELL +AY RFMQ + E + H+ Sbjct: 123 SPQALSIDTFHSWFARLIQIAPLASGVPHGYSLTEATGELLSDAYSRFMQQVNEKDQQHV 182 Query: 188 KAALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDDQEDEEGAEEHAAPAPLRWLQAL 247 K AL++LY GDF+ R LL++F+ KRAEWWA+ Q G E PL WL+ L Sbjct: 183 KDALVDLYTQVGDFSTRNLLNSFVAKRAEWWASVQ--------GGE------PLEWLEEL 228 Query: 248 CGADAQRDARLSLWEEHALVARPSQLAILLGQGGSANQARAVAIESALSAGPALEHFDAL 307 CGAD DARLSLW + L+AR +Q+A LLGQG + NQ RA AIE A++AG ALE+FDAL Sbjct: 229 CGADGVTDARLSLWSDDKLLARINQVAWLLGQGTAVNQERATAIEKAVTAGAALENFDAL 288 Query: 308 YSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALAAFEAEFNAVGEALRKLQGRSKEK 367 ++FFD K RKN K+L AL+ + + + AFE EF ++GEAL+K+ RS E Sbjct: 289 TNEFFDAGGKFRKNRATKNLTKALLDNLG---EEGVYAFEVEFESIGEALKKILRRSMEP 345 Query: 368 DVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQTRLDARY 427 V+ LN +LFT G AYL YQ VKAEQRV DFADLEWQAYRLL NE AAYLQ+RLDARY Sbjct: 346 KVIALNRSLFTVGAAYLEIYQAVKAEQRVFDFADLEWQAYRLLTNEEHAAYLQSRLDARY 405 Query: 428 KHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEPRVFVAAR 487 KH+LLDEFQDTNPLQW IV+ WL AYG + +PS+FVVGDPKQSIYRFRRAEPRVF AAR Sbjct: 406 KHVLLDEFQDTNPLQWSIVQAWLKAYGNETDRPSMFVVGDPKQSIYRFRRAEPRVFSAAR 465 Query: 488 EMLRAQGAAILRANQTRRNATAVVDVLNRSFVMGGNPLFSQQTTLGLAGGEVWRLPLARP 547 E+L AQGA LR NQTRRNA +VDVLN SF NP+++ QTTL G VW+LPL + Sbjct: 466 EVLVAQGADFLRTNQTRRNARGIVDVLNESF--RANPIYTAQTTLSNEAGAVWQLPLVQQ 523 Query: 548 DDGAENVSSADPDAASAAPEGEQEVIPWRNPLTTPRGEEDDARRLLEGQALAQALLKAYR 607 + + V S P R+PLT PR EE+DARRL EG+A+AQA+L+A Sbjct: 524 EKSEKVVWS---------PAN------MRDPLTEPREEEEDARRLQEGRAVAQAILRARE 568 Query: 608 EVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDKRGGLLESLEIADLI 667 P +W D+MLLV+KRTHL+AYE ALR AGIPF SD+RGGLLESLE+ADLI Sbjct: 569 VTP--------GTKWSDVMLLVKKRTHLSAYERALREAGIPFASDRRGGLLESLEVADLI 620 Query: 668 ALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWWQQLQAMQQEGAAS 727 ALLTFLITP+D ALAHVLKSPI+ ATD+DL+ +A RA + WW +L Q S Sbjct: 621 ALLTFLITPHDNLALAHVLKSPIMGATDNDLIALALRAEKT----WWGRLH---QAELNS 673 Query: 728 AALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVAHYAQHASPLTRSQTLGNIAAFVE 787 L RAV+LL++WL A LPVHDLLD ILH+G++VA YAQ ASPL R Q L NI AF E Sbjct: 674 EVLQRAVSLLEKWLELAARLPVHDLLDRILHEGDVVARYAQAASPLVRGQVLANIEAFTE 733 Query: 788 LSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEASVDASADAVRILTVHSAKGLEAPVV 847 L+LN+DAGRYPSLPKFIDALR LQ+SA DAPDEA +DAS DA RILT+H AKGLEA +V Sbjct: 734 LALNLDAGRYPSLPKFIDALRRLQKSADSDAPDEAEIDASLDAARILTIHGAKGLEADIV 793 Query: 848 AILDANHSDSVEDNLGILCAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEETLRTQEDW 907 +LDANHSD D+ G+LC W Q+ DAP HFS FGR++ERG+ARD LF EEE L+TQEDW Sbjct: 794 VLLDANHSDPARDDYGVLCEWKQEADAPNHFSVFGRQAERGAARDYLFAEEEQLKTQEDW 853 Query: 908 NLLYVAVTRAKQLLLVSGVAGTRGAGAGGVVQGSWYQRLFASDAPVREISEEAVHGAEAA 967 NLLYVA TRAK+LL+VSGVA R A GV G WY R ++ P E+ + + Sbjct: 854 NLLYVATTRAKKLLIVSGVADARSASENGVADGCWYARFQGAEEP--ELDQRVL--VSDL 909 Query: 968 DIEERFSLALFDPRPLPMSLFGAPADDPQDAVPALTADGALVSTDAIDEGVALHALLERL 1027 +E F LA+F P PLP+ Q +P A S+ I+EG+ALHAL+ERL Sbjct: 910 KLEAGFPLAIFSPPPLPLE---------QAEIP------AAFSSAEIEEGIALHALMERL 954 Query: 1028 THGHAWPLHVPSASVLVRWLGISAEMAQVVHAQAREVLAQPQLERFFNPALHRWARNEME 1087 T WP+ + +A VL +WL S E+A+VV QA +LAQP+L+RFF+PA HR+ARNEME Sbjct: 955 T--QTWPVQIHAAPVLAKWLPCSRELAEVVRVQADTILAQPELQRFFDPAQHRFARNEME 1012 Query: 1088 IVTPNGLMRLDRVVMFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFSDKQIRSA 1147 IV+ G+ R DRVVMFDDELW++DYKR L DSER YAAQL RYR A VF +IR+A Sbjct: 1013 IVSSAGVARFDRVVMFDDELWILDYKRNLFDSERVAYAAQLARYRLAAQDVFPGLKIRTA 1072 Query: 1148 LITAEGALIE 1157 LIT +G L E Sbjct: 1073 LITVDGTLTE 1082 >F1W2B5.1 F1W2B5_9BURK Putative uncharacterized protein Length = 1090 Score = 1237 bits (3200), Expect = 0.0, Method: Compositional matrix adjust. Identities = 677/1150 (58%), Positives = 800/1150 (69%), Gaps = 66/1150 (5%) Query: 8 PAAYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPELLA 67 P AY +N F AACDPRHSVVVEACAGSGKTWLLVARMLRLLLAG E+LA Sbjct: 4 PRAYTINDAEASTEAFIAAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGTAPSEMLA 63 Query: 68 ITFTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERILS 127 ITFTRKAAQEMR+RL++LL ELALA + LL ERG+A +L L+PLARGLYE++L+ Sbjct: 64 ITFTRKAAQEMRDRLIQLLRELALAPDDTVRTLLLERGIAASELNALMPLARGLYEKVLA 123 Query: 128 SEQSLSIDTFHSWFARLLQIAPLASGVPHGYTLTEKNGELLDEAYRRFMQTLREPEGAHI 187 S Q+LSIDTFHSWFA+L+++APLASGVPHGY+LT G L +AY RFMQ L E + + Sbjct: 124 SPQALSIDTFHSWFAKLIRLAPLASGVPHGYSLTAATGALALDAYSRFMQVLNEDGQSEV 183 Query: 188 KAALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDDQEDEEGAEEHAAPAPLRWLQAL 247 + AL LYEL GD+NAR+LLDAF+ KRAEWWAA+Q PL L L Sbjct: 184 RQALQHLYELVGDWNARKLLDAFVGKRAEWWAASQ--------------TGLPLDTLAEL 229 Query: 248 CGADAQRDARLSLWEEHALVARPSQLAILLGQGGSANQARAVAIESALSAGPALEHFDAL 307 CG D DARLSLW + ALV++ +A LLGQG NQ RAVAIE+AL+AG +L+ F L Sbjct: 230 CGDDGVTDARLSLWNDTALVSKMQTMAWLLGQGAKRNQERAVAIETALTAGASLDGFQQL 289 Query: 308 YSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALAAFEAEFNAVGEALRKLQGRSKEK 367 + QF DDK K R N + L A +++A +FE EF + AL +LQ RS E Sbjct: 290 FLQFMDDKGKVRGNDHRRGKLLA-ANEINLGDNSA-DSFETEFGTLAAALMQLQRRSTET 347 Query: 368 DVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQTRLDARY 427 VL LNAALFT G AYLA YQ VKAEQRV DFADLEWQAYRLL NE AAYLQ+RLD+RY Sbjct: 348 TVLALNAALFTVGAAYLAVYQAVKAEQRVFDFADLEWQAYRLLGNEEHAAYLQSRLDSRY 407 Query: 428 KHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEPRVFVAAR 487 +HILLDEFQDTNPLQW IVR WL AYG D+A PSVF+VGDPKQSIYRFRRAEPRVF+AAR Sbjct: 408 RHILLDEFQDTNPLQWSIVRAWLAAYGDDSAAPSVFIVGDPKQSIYRFRRAEPRVFLAAR 467 Query: 488 EMLRAQGAAILRANQTRRNATAVVDVLNRSFVMGGNPLFSQQTTLGLAGGEVWRLPLARP 547 ML AQGAAIL+ NQTRRNA ++++LN SF G NP+FS QTTL G +WRLPL Sbjct: 468 AMLAAQGAAILQTNQTRRNAPVLIELLNDSF--GPNPIFSAQTTLSARPGMIWRLPLV-- 523 Query: 548 DDGAENVSSADPDAASAAPEGEQEVIPWRNPLTTPRGEEDDARRLLEGQALAQALLKAYR 607 V SA + AP G + R+PL TP E++DARRL EG+A+A A+ +A Sbjct: 524 ------VQSA---STVVAPAG----LVLRDPLVTPLEEDEDARRLDEGRAVAVAIRRARL 570 Query: 608 EVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDKRGGLLESLEIADLI 667 E+ G R W D+MLLV+KR HL AYE+ALR AGIPF SDKRGGLLESLEIADLI Sbjct: 571 ELAACNGTLPR---WSDVMLLVKKRAHLGAYETALREAGIPFASDKRGGLLESLEIADLI 627 Query: 668 ALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWWQQLQAMQQEGAAS 727 ALLTFLITP D RALAHVLKSPII A D DL+ R AQ +GG WWQ+L A++ Sbjct: 628 ALLTFLITPGDNRALAHVLKSPIIGAADTDLI----RLAQHDGGSWWQRLLALED----- 678 Query: 728 AALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVAHYAQHASPLTRSQTLGNIAAFVE 787 L A LQ WL+ AP LPVHDLLD ILH+G+LVA YA L R Q +GN+ AF Sbjct: 679 -VLPDATMQLQHWLMIAPGLPVHDLLDRILHEGQLVARYAASVPALLRGQVIGNLEAFTA 737 Query: 788 LSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEASVDASADAVRILTVHSAKGLEAPVV 847 L+LN+DAGRYPSLPKFIDALR LQ +A DAPDEA +DA+ DAVRILT+HSAKGLEA +V Sbjct: 738 LALNLDAGRYPSLPKFIDALRALQNAAHNDAPDEADIDAALDAVRILTIHSAKGLEADIV 797 Query: 848 AILDANHSDSVEDNLGILCAWPQDEDAPTHFSAFGRRSERGSARDPLFEEEETLRTQEDW 907 +LDANHS+ D+ GILC WPQD APTHFSAFGR +ERG+ARD LF +E+ R QEDW Sbjct: 798 VLLDANHSEPARDDAGILCEWPQDAAAPTHFSAFGRVAERGAARDALFADEDRFRVQEDW 857 Query: 908 NLLYVAVTRAKQLLLVSGVAGTRGAGAGGVVQGSWYQRLFASDAPVREISEEAVHGAEAA 967 NLLYVA+TRA+Q L+VSGVAG R A A G V GSWY RL +AP E+ EA +A Sbjct: 858 NLLYVAMTRARQCLIVSGVAGKRNAQADGTVDGSWYARLL--EAP--EMLLEAESFGDAD 913 Query: 968 DIEERFSLALFDPRPLPMSLFGAPADDPQDAVPALTADGALVSTDAIDEGVALHALLERL 1027 IE F +F+P +P PA AVP + ST IDEG+ALH LLERL Sbjct: 914 SIESDFHWPVFNPAVIP------PA-----AVPEVAE-----STPEIDEGIALHGLLERL 957 Query: 1028 THGHAWPLHVPSASVLVRWLGISAEMAQVVHAQAREVLAQPQLERFFNPALHRWARNEME 1087 T L VP ASV+ RWL S A VV AQA +LA P L +FF+P +A NE+E Sbjct: 958 TQHRDGVLPVPDASVIARWLDCSPACAGVVRAQALTILAAPDLSQFFDPHQIVFAHNEIE 1017 Query: 1088 IVTPNGLMRLDRVVMFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFSDKQIRSA 1147 ++ L+R DR+V D LW++DYKRRLL SERADYAAQL RYR A ++V++ + IR+A Sbjct: 1018 LLHDGELLRFDRLVQLPDALWILDYKRRLLASERADYAAQLARYRRAALAVYAGQTIRTA 1077 Query: 1148 LITAEGALIE 1157 LI +G+ E Sbjct: 1078 LILVDGSFHE 1087 >Q8Y054.1 Q8Y054_RALSO Probable homologous recombinational repair protein, atp-dependent exodnase (Exonuclease v) beta subunit (Contains helicase and exonuclease domains) Length = 1177 Score = 859 bits (2219), Expect = 0.0, Method: Compositional matrix adjust. Identities = 543/1196 (45%), Positives = 722/1196 (60%), Gaps = 91/1196 (7%) Query: 10 AYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPELLAIT 69 AYE +G V F+RAACDP SVVVEACAGSGKTWLLV RMLRLLLAGA ++LAIT Sbjct: 5 AYERDGAPVSPEAFSRAACDPLRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAIT 64 Query: 70 FTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERILSSE 129 FTRKAA+EMR+RLL+ L +LA AD+A L R V E + P L+ +ARGLY R+L S Sbjct: 65 FTRKAAEEMRQRLLDSLAQLAGADDAAVVRELVARTVDEREAPGLVAVARGLYGRVLESP 124 Query: 130 QSLSIDTFHSWFARLLQIAPLASGVPHGYTLTEKNGELLDEAYRRFMQTLREPEGAHIKA 189 ++IDTFH WF LL+ APL+SGVP G +L E G L EA+ F + L E A ++A Sbjct: 125 SRMAIDTFHGWFGGLLRGAPLSSGVPQGASLREDAGRLRREAWAPFWRRLLAEEHAELRA 184 Query: 190 ALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDDQEDEEGAEEHAAPAPLRWLQALCG 249 A L +L GDF A +LLDA +R++WWA + A PL L L G Sbjct: 185 AYDTLVDLVGDFQAGRLLDAMFAQRSDWWAY------------KAQAGAHPLGPLDDLLG 232 Query: 250 ADAQRDARLSLWEEHALVARPSQLAILLGQGGSANQARAVAIESALSAGPALE------- 302 DA D + ++ AL+A +++ LGQGG+A RAV IE+A++A AL+ Sbjct: 233 DDAHTDPLIEALQDAALLADMLRVSGWLGQGGAAEGKRAVQIETAVTAARALDLSDAAAR 292 Query: 303 --HFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALAAFEAEFNAV-GEALRK 359 F+AL++ F KPR K+L+ A+ EDAA A+ +AV EAL Sbjct: 293 RHAFEALFTAFHTQAGKPRACKPTKALVKAI------GEDAAQTL--ADLHAVLCEALAV 344 Query: 360 LQGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYL 419 Q R E V +NAALFT G A + YQ K + R +DF DLEW+A RL+R+E +AAYL Sbjct: 345 YQARRHESRVRAINAALFTLGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYL 404 Query: 420 QTRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAE 479 Q RLDARYKH+LLDEFQDTNP+QW I++ WL Y G +P+VF+VGDPKQSIYRFRRA+ Sbjct: 405 QVRLDARYKHLLLDEFQDTNPMQWRILQGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRAD 464 Query: 480 PRVFVAAREMLRAQ-GAAILRANQTRRNATAVVDVLNRSFVM----GGNPLFSQQTT-LG 533 R+F AAR+ML A A +LR N+TRRNA AV++ +N F++ G P++++Q+T + Sbjct: 465 ARLFEAARDMLVAAFDATVLRTNRTRRNAPAVLEWVNAVFLLARARGDYPIYAEQSTAVD 524 Query: 534 LAGGEVWRLPLARPDDGAENVSSADPDAASAAPEGEQEVIPWRNPLTTPRGEEDDARRLL 593 G LPL P+AA A E P R+ LT PR E D++R Sbjct: 525 APVGRALLLPLV-----------PVPEAAQA-----DETAP-RDSLTEPREEAGDSQRYD 567 Query: 594 EGQALAQALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDK 653 EG+ +A L + V E R +RW D LLVR++ +LA YE ALR AG+P++S + Sbjct: 568 EGRQVAACLRALHAGERVRENGAERPVRWSDFQLLVRRKRYLADYERALRDAGVPYLSPR 627 Query: 654 RGGLLESLEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHW 713 RGGLL +LE DL ALL FL+TP LAHVL+SPI + TDDDL+ +A+ A W Sbjct: 628 RGGLLATLEALDLCALLDFLMTPQADLPLAHVLRSPIFAVTDDDLIALAQAGEGASAPTW 687 Query: 714 WQQLQAMQQEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVAHYAQHASPL 773 W++L A+ A+A RA LL RWL AP LPVHDLLD I++ GEL YA+ Sbjct: 688 WERLAALADRPHAAAQWRRAHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEA 747 Query: 774 TRSQTLGNIAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEA----------S 823 R Q L N+ AF++L+L++D GRYPSLPKF+ LR +++ ++PDE + Sbjct: 748 NREQALANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEEESPDEGVQGDAAEAPDA 807 Query: 824 VDA-----SADAVRILTVHSAKGLEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTHF 878 +DA DAV+ILTVH++KGLEAP V +LD++HSD+ D +GIL WP +AP HF Sbjct: 808 IDAELASEGLDAVQILTVHASKGLEAPFVVLLDSHHSDTRADTVGILIDWPPGAEAPAHF 867 Query: 879 SAFGRRSERGSARDPLFEEEETLRTQEDWNLLYVAVTRAKQLLLVSGVAGTR-GAGAGGV 937 SAFG+ +ERG ARDPLF +E TL +E+WNLLYVA+TRA+Q L+VSGVA R GA A V Sbjct: 868 SAFGKAAERGRARDPLFAQEATLAERENWNLLYVAMTRARQALIVSGVANKRDGAAAQAV 927 Query: 938 VQG---------SWYQRLFASDAPVREISEEAVHGAEAADIEERFSLALFDPR-PLPMSL 987 +G SWY L + A E A A + ++A D R PL +++ Sbjct: 928 DEGDVPDVDGSASWYTLLATAGAATPAPVEAAAGAGGADHAASQ-AVAYHDFRVPLTVTV 986 Query: 988 -FGAPADDPQDAVPALTADGALVSTDAIDEGVALHALLERLTHGHAWPLHVPSASVLVRW 1046 G + DA TAD A+ A+ +G LHA+LERLT H P VP A+ + RW Sbjct: 987 RIGGAVERVADAPD--TAD-AIFDQGAVAQGELLHAVLERLTR-HGKPEQVPDAAAIARW 1042 Query: 1047 LGIS----AEMAQVVHAQAREVLAQPQLERFFNPALHRWARNEMEIVTPNG-LMRLDRVV 1101 G + A+ A+ A R +LA L F+PA A NE+E+ +P+G L+R+DR++ Sbjct: 1043 FGATGITDADAARATEA-VRRMLAAEALAHVFDPARFDVAHNEVELFSPDGALLRIDRLI 1101 Query: 1102 MFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFSDKQIRSALITAEGALIE 1157 DE+ V+DYK RLL ERA YA QL Y +A+ ++ + +R+ + TA+G I+ Sbjct: 1102 ERGDEVLVVDYKLRLLPVERAAYADQLRGYAAAVAPIYPGRAVRAGVATAQGEWID 1157 >D8N403.1 D8N403_RALSO Putative helicase, uvrD subfamily Length = 1177 Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust. Identities = 540/1194 (45%), Positives = 715/1194 (59%), Gaps = 87/1194 (7%) Query: 10 AYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPELLAIT 69 AYE +G V F+ AACDP SVVVEACAGSGKTWLLV RMLRLLLAGA ++LAIT Sbjct: 5 AYERDGAPVSPEAFSGAACDPLRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPADILAIT 64 Query: 70 FTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERILSSE 129 FTRKAA+EMR+RLL++L +LA AD+A L R V E + P L+ +ARGLY R+L S Sbjct: 65 FTRKAAEEMRQRLLDILAQLAGADDAAVVRELVARTVDEREAPGLVAVARGLYGRVLESP 124 Query: 130 QSLSIDTFHSWFARLLQIAPLASGVPHGYTLTEKNGELLDEAYRRFMQTLREPEGAHIKA 189 ++IDTFH WF LL+ APL+SGVP G +L E G L EA+ F + L E A ++A Sbjct: 125 SRMAIDTFHGWFGGLLRGAPLSSGVPQGASLREDAGRLRREAWAPFWRGLLAEEHAELRA 184 Query: 190 ALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDDQEDEEGAEEHAAPAPLRWLQALCG 249 A L +L GDF A +LLDA +R++WWA + A PL L L G Sbjct: 185 AYDTLVDLVGDFQAGRLLDAMFAQRSDWWAY------------KAQAGAHPLGPLDDLLG 232 Query: 250 ADAQRDARLSLWEEHALVARPSQLAILLGQGGSANQARAVAIESALSAGPALE------- 302 DA D + ++ AL+A +++ LGQGG+A RAV IE+A++A AL+ Sbjct: 233 DDAHTDPLIEALQDAALLADMLRVSGWLGQGGAAEGKRAVQIETAVTAARALDLSDAAAR 292 Query: 303 --HFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALAAFEAEFNAVGEALRKL 360 F+AL++ F KPR K+L+ + EDAA + A+ EAL Sbjct: 293 RHAFEALFTAFHTQAGKPRACKPTKALIKTI------GEDAAQTLVDLH-AALCEALAAY 345 Query: 361 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ 420 R E V +NAALFT G A + YQ K + R +DF DLEW+A RL+R+E +AAYLQ Sbjct: 346 HARRHESRVRAVNAALFTLGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQ 405 Query: 421 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 480 RLDARYKH+LLDEFQDTNP+QW I++ WL Y G +P+VF+VGDPKQSIYRFRRA+ Sbjct: 406 VRLDARYKHLLLDEFQDTNPMQWRILQGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADA 465 Query: 481 RVFVAAREMLRAQ-GAAILRANQTRRNATAVVDVLNRSFVM----GGNPLFSQQTT-LGL 534 R+F AAR+ML A A +LR N+TRRNA AV++ +N F++ G P++++Q+T + Sbjct: 466 RLFDAARDMLVAAFDATVLRTNRTRRNAPAVLEWVNAVFLLARARGDYPIYAEQSTGVDA 525 Query: 535 AGGEVWRLPLARPDDGAENVSSADPDAASAAPEGEQEVIPWRNPLTTPRGEEDDARRLLE 594 G LPL P+AA A E P R+ LT PR E D++R E Sbjct: 526 PVGRALLLPLV-----------PVPEAAQA-----DETAP-RDSLTEPREEAGDSQRYDE 568 Query: 595 GQALAQALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDKR 654 G+ +A L + V E RS+RW D LLVR++ +LA YE ALR AG+P++S +R Sbjct: 569 GRQVAACLRALHAGERVRENGAERSVRWSDFQLLVRRKRYLADYERALRDAGVPYLSPRR 628 Query: 655 GGLLESLEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWW 714 GGLL +LE DL ALL FL+TP LAHVL+SPI + TDDDL+ +A+ A WW Sbjct: 629 GGLLATLEALDLCALLDFLMTPQADLPLAHVLRSPIFAVTDDDLIALAQAGEGASAPTWW 688 Query: 715 QQLQAMQQEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVAHYAQHASPLT 774 ++L A+ A+A RA LL RWL AP LPVHDLLD I++ GEL YA+ Sbjct: 689 ERLTALADRPHAAAQWRRAHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPEAN 748 Query: 775 RSQTLGNIAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEA----------SV 824 R Q L N+ AF++L+L++D GRYPSLPKF+ LR +++ ++PDE ++ Sbjct: 749 REQALANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEEESPDEGVQADAAEAPDAI 808 Query: 825 DA-----SADAVRILTVHSAKGLEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTHFS 879 DA DAV+ILTVH++KGLEAP V +LD++HSD+ D GIL WP +AP HFS Sbjct: 809 DAELASEGLDAVQILTVHASKGLEAPFVVLLDSHHSDTRADTAGILIDWPPGAEAPAHFS 868 Query: 880 AFGRRSERGSARDPLFEEEETLRTQEDWNLLYVAVTRAKQLLLVSGVAGTR-GAGAGGVV 938 AFG+ +ERG ARDPLF +E L +E+WNLLYVA+TRA+Q L+VSGVA R GA A V Sbjct: 869 AFGKAAERGRARDPLFAQEAALAERENWNLLYVAMTRARQALIVSGVANKRDGAAAQAVD 928 Query: 939 QG---------SWYQRLFASDAPVREISEEAVHGAEAADIEERFSLALFDPR-PLPMSL- 987 +G SWY L A+ EA G AD ++A D R PL +++ Sbjct: 929 EGDAPDVDGSASWYT-LLATAGAATPAPVEAAAGTGGADHAASQAVAYHDFRVPLTVTVR 987 Query: 988 FGAPADDPQDAVPALTADGALVSTDAIDEGVALHALLERLTHGHAWPLHVPSASVLVRWL 1047 G A+ DA TAD A+ A+ +G LHA+LERLT H P VP A+ + RW Sbjct: 988 IGGAAERVADAPD--TAD-AIFDQGAVAQGELLHAVLERLTR-HGKPEQVPDAAAIARWF 1043 Query: 1048 ---GISAEMAQVVHAQAREVLAQPQLERFFNPALHRWARNEMEIVTPNG-LMRLDRVVMF 1103 GI+ A R +LA L F+PA A NE+E+ +P G L+R+DR++ Sbjct: 1044 GATGITDADAARAAEAVRRMLAAEALAHVFDPARFDVAHNEVELFSPEGALLRIDRLIER 1103 Query: 1104 DDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFSDKQIRSALITAEGALIE 1157 DE+ V+DYK RLL ERA YA QL Y +A+ ++ + +R+ + TA+G I+ Sbjct: 1104 GDEVLVVDYKLRLLPVERAAYADQLRGYAAAVAPIYPGRAVRAGVATAQGEWID 1157 >D8NUU1.1 D8NUU1_RALSO Putative helicase, uvrD subfamily Length = 1178 Score = 856 bits (2212), Expect = 0.0, Method: Compositional matrix adjust. Identities = 538/1196 (44%), Positives = 715/1196 (59%), Gaps = 90/1196 (7%) Query: 10 AYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPELLAIT 69 AYE +G V F+RAACDP+ SVVVEACAGSGKTWLLV RMLRLLLAGA ++LAIT Sbjct: 5 AYERDGAPVSPEAFSRAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAIT 64 Query: 70 FTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERILSSE 129 FTRKAA+EMR+RLL++L +LA AD+A A L R V E + L+ +ARGLY R+L S Sbjct: 65 FTRKAAEEMRQRLLDILAQLAGADDAAAVRELVARTVDEREALGLVAVARGLYARVLESP 124 Query: 130 QSLSIDTFHSWFARLLQIAPLASGVPHGYTLTEKNGELLDEAYRRFMQTLREPEGAHIKA 189 ++IDTFH WF LL+ APL+SGVP G +L E G L EA+ F + L E A ++A Sbjct: 125 SRMAIDTFHGWFGGLLRGAPLSSGVPQGASLREDAGRLRREAWAPFWRRLLAEEHAELRA 184 Query: 190 ALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDDQEDEEGAEEHAAPAPLRWLQALCG 249 A L +L GDF A +LLDA +R++WWA + A PL L L G Sbjct: 185 AYDALVDLVGDFQAGRLLDAMFAQRSDWWAY------------KAQAGTHPLGPLDDLLG 232 Query: 250 ADAQRDARLSLWEEHALVARPSQLAILLGQGGSANQARAVAIESALSAGPALE------- 302 DA D + ++ L+A +++ LGQGG+A RAV IE+A++A AL+ Sbjct: 233 DDAHTDPLIEALQDAVLLADMLRVSGWLGQGGAAEGKRAVQIETAVTAARALDLPDEAAR 292 Query: 303 --HFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALAAFEAEFNAVGEALRKL 360 F+AL+ F KPR K+L+ A+ ED A + A+ EAL Sbjct: 293 RHAFEALFIAFHTQAGKPRACKPTKALVKAI------GEDCAQTLVDLH-AALCEALAAY 345 Query: 361 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ 420 R E V +NAALFT G A + YQ K + R +DF DLEW+A RL+R+E +AAYLQ Sbjct: 346 HARRHESRVRAINAALFTLGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQ 405 Query: 421 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 480 RLDARYKH+LLDEFQDTNP+QW I++ WL Y G +P+VF+VGDPKQSIYRFRRA+ Sbjct: 406 VRLDARYKHLLLDEFQDTNPMQWRILQGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADA 465 Query: 481 RVFVAAREMLRAQ-GAAILRANQTRRNATAVVDVLNRSFVM----GGNPLFSQQTT-LGL 534 R+F AAR+ML A A +LR N+TRRNA AV++ +N F+ G P++++Q+T + Sbjct: 466 RLFDAARDMLVAGFEATVLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYAEQSTAVDA 525 Query: 535 AGGEVWRLPLARPDDGAENVSSADPDAASAAPEGEQ--EVIPWRNPLTTPRGEEDDARRL 592 G+ LPL P+ Q E P R+ LT PR E D++R Sbjct: 526 PVGQALLLPLV------------------PVPQAVQSDETTP-RDSLTEPREEAGDSQRY 566 Query: 593 LEGQALAQALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISD 652 EG +A L + V E R +RW D LLVR++ +LA YE ALR AG+P++S Sbjct: 567 DEGCQVAACLRALHVGERVRENGAERPVRWSDFQLLVRRKRYLADYERALRDAGVPYLSP 626 Query: 653 KRGGLLESLEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGH 712 +RGGLL +LE DL ALL FL+TP LAHVL+SPI + TDDDL+ +AR A Sbjct: 627 RRGGLLATLEALDLCALLDFLMTPQADLPLAHVLRSPIFAVTDDDLIALARAGEGAFAPT 686 Query: 713 WWQQLQAMQQEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVAHYAQHASP 772 WW++L A+ + A+A L RA LL RWL AP LPVHDLLD I++ GEL YA+ Sbjct: 687 WWERLTALAGQPHAAAQLRRAHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPE 746 Query: 773 LTRSQTLGNIAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEA---------- 822 R Q L N+ AF++L+L++D GRYPSLPKF+ LR +++ ++PDE Sbjct: 747 ANREQALANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEEESPDEGVQGEAAEAPD 806 Query: 823 SVDA-----SADAVRILTVHSAKGLEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTH 877 ++DA DAV+ILTVH++KGLEAP VA+LD++HSD+ D GIL WP +AP H Sbjct: 807 TIDAELASEGLDAVQILTVHASKGLEAPFVALLDSHHSDTRADTAGILIDWPPGAEAPAH 866 Query: 878 FSAFGRRSERGSARDPLFEEEETLRTQEDWNLLYVAVTRAKQLLLVSGVAGTR-GAGAGG 936 FSAFG+ +ERG ARDPLF +E L +E+WNLLYVA+TRA+Q L+VSGVA R GA A Sbjct: 867 FSAFGKTAERGRARDPLFAQETALGERENWNLLYVAMTRARQALIVSGVANKRDGAAAQA 926 Query: 937 VVQG---------SWYQRLFASDAPVREISEEAVHGAEAADIEERFSLALFDPR-PLPMS 986 V +G SWY L + E A + AD ++A D R PL ++ Sbjct: 927 VDEGDAPEVDGSASWYTLLATAGVATPAPVEAAAAASTGADHAASQAVAYHDFRVPLTVT 986 Query: 987 L-FGAPADDPQDAVPALTADGALVSTDAIDEGVALHALLERLTHGHAWPLHVPSASVLVR 1045 + G A+ DA P TAD A+ A+ +G LHA+LERLT H P VP A+ + R Sbjct: 987 VRIGGAAERAADA-PG-TAD-AIFDQGAVAQGELLHAVLERLTR-HGKPEQVPDAAAIAR 1042 Query: 1046 WL---GISAEMAQVVHAQAREVLAQPQLERFFNPALHRWARNEMEIVTPNG-LMRLDRVV 1101 W G++ A R +LA L F+PA A NE+E+ +P+G L+R+DR++ Sbjct: 1043 WFGATGVTDADAARAAEAVRRMLAAEALAHVFDPARFDVAHNEVELFSPDGMLLRVDRLI 1102 Query: 1102 MFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFSDKQIRSALITAEGALIE 1157 DE+ V+DYK RLL ERA YA QL Y +A+ ++ + +R+ + TA+G I+ Sbjct: 1103 ERGDEVLVVDYKLRLLPVERAAYADQLRGYVAAVAPIYPGRAVRAGVATAQGEWID 1158 >D8NKC2.1 D8NKC2_RALSO Putative helicase, uvrD subfamily Length = 1177 Score = 848 bits (2190), Expect = 0.0, Method: Compositional matrix adjust. Identities = 533/1199 (44%), Positives = 707/1199 (58%), Gaps = 97/1199 (8%) Query: 10 AYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPELLAIT 69 AYE +G V F+RAACDP+ SVVVEACAGSGKTWLLV RMLRLLLAGA ++LAIT Sbjct: 5 AYERDGAPVSPEAFSRAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPADILAIT 64 Query: 70 FTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERILSSE 129 FTRKAA+EMR+RLL++L +LA AD+A L R V E D P L+ ARGLY R+L S Sbjct: 65 FTRKAAEEMRQRLLDILAQLAGADDAAVVRELVARTVDERDAPGLVAAARGLYARVLESP 124 Query: 130 QSLSIDTFHSWFARLLQIAPLASGVPHGYTLTEKNGELLDEAYRRFMQTLREPEGAHIKA 189 ++IDTFH WF LL+ APL+SGVP G +L E G L EA+ F + L E A ++A Sbjct: 125 SRMAIDTFHGWFGGLLRGAPLSSGVPQGASLREDAGRLRREAWAPFWRRLLAEEHAELRA 184 Query: 190 ALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDDQEDEEGAEEHAAPAPLRWLQALCG 249 A L +L GDF A +LLDA +R++WWA + A PL L L G Sbjct: 185 AYDTLVDLVGDFQAGRLLDAMFAQRSDWWA------------YKAQAGAHPLGPLDDLLG 232 Query: 250 ADAQRDARLSLWEEHALVARPSQLAILLGQGGSANQARAVAIESALSAGPALEHFDA--- 306 DA D + ++ AL+A +++ LGQGG+A RAV IE+A++ AL+ DA Sbjct: 233 DDAHTDPLIEALQDAALLADMLRVSGWLGQGGAAEGKRAVQIETAVTTARALDRSDAAAR 292 Query: 307 ------LYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALAAFEAEFNAVGEALRKL 360 L++ F KPR K+L+ A+ E +A + A+ EAL Sbjct: 293 RDAFEMLFTAFHTQAGKPRACKPTKALVNAI------GEGSAQTLVDLH-GALCEALAAY 345 Query: 361 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ 420 R E V +NAALFT G A + YQ K + R +DF DLEW+A RL+R+E +AAYLQ Sbjct: 346 HARRHESRVRAINAALFTLGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQ 405 Query: 421 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 480 RLDARYKH+LLDEFQDTNP+QW I++ WL Y G +P+VF+VGDPKQSIYRFRRA+ Sbjct: 406 VRLDARYKHLLLDEFQDTNPMQWRILQGWLRGYEGTGMRPTVFLVGDPKQSIYRFRRADA 465 Query: 481 RVFVAAREMLRAQ-GAAILRANQTRRNATAVVDVLNRSFVM----GGNPLFSQQTT-LGL 534 R+F AAR+ML A A +LR N+TRRNA AV++ +N F+ G ++++Q+T + Sbjct: 466 RLFEAARDMLVAGFDATVLRTNRTRRNAPAVLEWVNAVFLQARARGDYAIYAEQSTAVDA 525 Query: 535 AGGEVWRLPLARPDDGAENVSSADPDAASAAPEGEQEVIPWRNPLTTPRGEEDDARRLLE 594 G+ LPL + A+ AAP R+ LT PR E D++R E Sbjct: 526 PAGQALLLPLVPVPEAAQT--------GEAAP---------RDSLTEPREEAGDSQRYDE 568 Query: 595 GQALAQALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDKR 654 G +A L + V E R +RW D LLVR++ +LA YE ALR AG+P++S +R Sbjct: 569 GCQVAACLRALHAGERVRENGDERPVRWSDFQLLVRRKRYLADYERALRDAGVPYLSPRR 628 Query: 655 GGLLESLEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHWW 714 GGLL +LE DL ALL FL+TP LAHVL+SPI +ATDDDL+ +A+ A WW Sbjct: 629 GGLLATLEALDLCALLDFLMTPQADLPLAHVLRSPIFAATDDDLIALAQTGEGASAPTWW 688 Query: 715 QQLQAMQQEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVAHYAQHASPLT 774 +L A+ + A+A L A LL RWL AP LPVHDLLD I++ GEL YA+ + Sbjct: 689 ARLTALASQPHAAARLRHAHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPDAS 748 Query: 775 RSQTLGNIAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEA----------SV 824 R Q L N+ AF++L+L++D GRYPSLPKF+ LR +++ ++PDE ++ Sbjct: 749 REQALANLDAFLKLALDLDGGRYPSLPKFMTELRAIRQGDEEESPDEGVQGDAAETPDAI 808 Query: 825 DA-----SADAVRILTVHSAKGLEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTHFS 879 DA DAV+ILTVH++KGLEAP V +LD++HSD+ D GIL W +AP HFS Sbjct: 809 DAELASEGLDAVQILTVHASKGLEAPFVVLLDSHHSDTRADTAGILIDWLPGAEAPAHFS 868 Query: 880 AFGRRSERGSARDPLFEEEETLRTQEDWNLLYVAVTRAKQLLLVSGVAGTR-GAGAGGVV 938 AFG+ +ERG ARDPLF +E L +E+WNLLYVA+TRA+Q L+VSGVA R GA A V Sbjct: 869 AFGKTAERGRARDPLFTQEAALAERENWNLLYVAMTRARQALIVSGVANKRDGAAAQAVD 928 Query: 939 QG---------SWYQRL----FASDAPV--REISEEAVHGAEAADIEERFSLALFDPRPL 983 +G SWY L A+ APV E EAVH A F PL Sbjct: 929 EGDVPEVDGSASWYTLLATAGVATPAPVAQAEAGGEAVHAGPRAVSYHDFR------EPL 982 Query: 984 PMSL-FGAPADDPQDAVPALTADGALVSTDAIDEGVALHALLERLTHGHAWPLHVPSASV 1042 +++ G A+ DA A A+ A+ +G LHA+LERLT H P VP A+ Sbjct: 983 TVTVRIGGTAERVADAP---NAADAIFDQGAVAQGELLHAVLERLTR-HGKPEQVPDAAA 1038 Query: 1043 LVRWL---GISAEMAQVVHAQAREVLAQPQLERFFNPALHRWARNEMEIVTPNG-LMRLD 1098 + RW GI+ A R +LA L F+ A A NE+E+ +P+G L+R+D Sbjct: 1039 IARWFGATGITDADAARAAEAVRCMLAAEALAHVFDAARFDVAHNEVELFSPDGALLRID 1098 Query: 1099 RVVMFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFSDKQIRSALITAEGALIE 1157 R++ E+ V+DYK RLL ER YA QL Y +A+ ++ + +R+ + TA+G I+ Sbjct: 1099 RLIERGGEVLVVDYKLRLLPVERVAYADQLRGYVAAVAPMYPGRTVRAGVATAQGEWID 1157 >B2U9S4.1 B2U9S4_RALPJ UvrD/REP helicase Length = 1173 Score = 846 bits (2186), Expect = 0.0, Method: Compositional matrix adjust. Identities = 520/1201 (43%), Positives = 701/1201 (58%), Gaps = 105/1201 (8%) Query: 10 AYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPELLAIT 69 AYE +G V F+RAAC+P+ SVVVEACAGSGKTWLLV RMLRLLLAGA ++LAIT Sbjct: 5 AYECDGAPVSPEAFSRAACEPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAIT 64 Query: 70 FTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERILSSE 129 FTRKAA+EMR+RLL++L +LA AD+ G L R V E D P L+ ARGLY R+L S Sbjct: 65 FTRKAAEEMRQRLLDILAQLAAADDEGVVRELVARTVDERDAPALIETARGLYARVLESP 124 Query: 130 QSLSIDTFHSWFARLLQIAPLASGVPHGYTLTEKNGELLDEAYRRFMQTLREPEGAHIKA 189 ++IDTFH WF LL+ APL+SGV G +L E G L EA+ F + L + A ++A Sbjct: 125 SRMAIDTFHGWFGSLLRGAPLSSGVQQGASLREDAGRLRREAWAPFWRGLLAEDHAELRA 184 Query: 190 ALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDDQEDEEGAEEHAAPAPLRWLQALCG 249 A L +L GDF A +LLDA +R++WWA + A PL L L G Sbjct: 185 AYETLADLVGDFQAGRLLDAMFHQRSDWWA------------YKAQAGGRPLAALDELLG 232 Query: 250 ADAQRDARLSLWEEHALVARPSQLAILLGQGGSANQARAVAIESALSAGPALE------- 302 DA D + ++ AL+A ++ LGQGG+A RAVAIESA++A ++ Sbjct: 233 DDATVDPLIEALQDAALLADMLHVSGWLGQGGAAEGKRAVAIESAVTAARGMDVSDEAAR 292 Query: 303 --HFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALAAFEAEFNAVGEALRKL 360 FDAL++ F K R K+L+ A+ D A+ EAL + Sbjct: 293 VRAFDALFAAFHTQAGKARACKPTKALIKAV-------GDEHARTLVTLHTALCEALTTI 345 Query: 361 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ 420 Q R +E V NAALF G A + YQ K + R +DF DLEW+A RL++ + +AAYLQ Sbjct: 346 QARRQEARVRAANAALFALGDALIDRYQAYKRQTRAMDFTDLEWEAARLMQQDDTAAYLQ 405 Query: 421 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 480 RLDARYKH+LLDEFQDTNP+QW I++ WL Y G QPSVF+VGDPKQSIYRFRRA+ Sbjct: 406 VRLDARYKHLLLDEFQDTNPMQWRILQGWLAGYAGTGTQPSVFLVGDPKQSIYRFRRADA 465 Query: 481 RVFVAAREMLRAQ-GAAILRANQTRRNATAVVDVLNRSFVM----GGNPLFSQQTTLGLA 535 R+F AAREML A+ A +LR N+TRRNA AV++ +N F+ G P++++Q+T A Sbjct: 466 RLFDAAREMLVAEFNATVLRTNRTRRNAPAVLEWVNAVFLQARARGDYPIYAEQSTAVDA 525 Query: 536 GGEVWRLPLARPDDGAENVSSADPDAASAAPEGEQ--EVIPWRNPLTTPRGEEDDARRLL 593 V A E E+ E P R+ LT PR E D++R Sbjct: 526 -----------------PVGKALLLPLVPVLEAERVDETTP-RDTLTEPREEAGDSQRYA 567 Query: 594 EGQALAQALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISDK 653 EG+ +A L + + EG RS+RW D LLVR++ +LA YE ALR AG+P++S + Sbjct: 568 EGRQVAACLRALHASERIREGGVERSVRWSDFQLLVRRKRYLADYERALRDAGVPYLSPR 627 Query: 654 RGGLLESLEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGHW 713 RGGLL +LE DL ALL FL+TP +LAHVL+SP+ +ATDD L+ +A+ W Sbjct: 628 RGGLLATLEALDLCALLDFLMTPQADLSLAHVLRSPVFAATDDHLIALAQFGEGTLALTW 687 Query: 714 WQQLQAMQQEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVAHYAQHASPL 773 W++L A+ + AS A +L RWL AP LPVHDLLD I++ GEL YA+ A Sbjct: 688 WERLTALAGQADASDTFHYAHRMLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERAPAA 747 Query: 774 TRSQTLGNIAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEA---------SV 824 R Q L N+ AF++L+L++D GRYPSLPKF+ LR +++ ++PDE ++ Sbjct: 748 NRDQVLANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEDESPDEGMQGDTDAPDAI 807 Query: 825 DASA-----DAVRILTVHSAKGLEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTHFS 879 DA DA +ILTVH++KGLEAP V +LD++HSD+ D GIL WP APTHFS Sbjct: 808 DAEVASEGLDAAQILTVHASKGLEAPFVVLLDSHHSDARVDTAGILIDWPPGAQAPTHFS 867 Query: 880 AFGRRSERGSARDPLFEEEETLRTQEDWNLLYVAVTRAKQLLLVSGVAGTRGAGAGGVVQ 939 AFG+ SERG ARDPLF++E L +E+WNLLYVA+TRA+Q L+VSGVA R A A V Sbjct: 868 AFGKTSERGLARDPLFKQEHDLAERENWNLLYVAMTRARQALIVSGVANKRDAAAAQSVD 927 Query: 940 ----------GSWYQRL----FASDAPVREISEEAVHGAEAADIEERFSLALFDPR-PLP 984 SWY L AS AP+ + + ++ A + +++ D R PL Sbjct: 928 EGDAPEVDGTASWYTHLATAGVASPAPMVDGAADSADNAAGPE-----AVSYHDFRAPLT 982 Query: 985 MSL----FGAPADDPQDAVPALTADGALVSTDAIDEGVALHALLERLTHGHAWPLHVPSA 1040 +++ GA A+ P D V A+ +G LHA+LERLT P P A Sbjct: 983 VTVRVGAAGASAEGPADIV---------FDQGAVAQGELLHAVLERLTR-RGLPEQAPDA 1032 Query: 1041 SVLVRWL---GISAEMAQVVHAQAREVLAQPQLERFFNPALHRWARNEMEIVTPNG-LMR 1096 + RW G++ A R + + L F+PA A NE+E+ P+G L+R Sbjct: 1033 ETIARWFSATGVTQADATRTADAVRRMFSAETLMHVFDPACFDAAHNEIELFAPDGALLR 1092 Query: 1097 LDRVVMFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFSDKQIRSALITAEGALI 1156 +DR++ +++ V+DYK RLL ERA YA QL Y +A+ ++ + +R+ + TA+G I Sbjct: 1093 IDRLIERGNDILVVDYKLRLLPVERAAYADQLRGYVAAISPMYPGRNVRAGVATAQGEWI 1152 Query: 1157 E 1157 + Sbjct: 1153 D 1153 >B5SM24.1 B5SM24_RALSO Homologous recombinational repair protein, atp-dependent exodnase (Exonuclease v) beta subunit (Contains helicase and exonuclease domains) Length = 1177 Score = 844 bits (2180), Expect = 0.0, Method: Compositional matrix adjust. Identities = 532/1201 (44%), Positives = 705/1201 (58%), Gaps = 101/1201 (8%) Query: 10 AYEVNGEAVDAAVFTRAACDPRHSVVVEACAGSGKTWLLVARMLRLLLAGAQAPELLAIT 69 AYE +G V F+RAACDP+ SVVVEACAGSGKTWLLV RMLRLLLAGA ++LAIT Sbjct: 5 AYERDGAPVSPEAFSRAACDPQRSVVVEACAGSGKTWLLVTRMLRLLLAGAAPSDILAIT 64 Query: 70 FTRKAAQEMRERLLELLHELALADEAGAAALLRERGVAEPDLPRLLPLARGLYERILSSE 129 FTRKAA+EMR+RLL++L +LA AD+A A L R V E D P L+ ARGLY R+L S Sbjct: 65 FTRKAAEEMRQRLLDILAQLAGADDAAAVRELVARTVDERDAPGLVATARGLYARVLESP 124 Query: 130 QSLSIDTFHSWFARLLQIAPLASGVPHGYTLTEKNGELLDEAYRRFMQTLREPEGAHIKA 189 ++IDTFH WF LL+ APL+SGVP G +L E G L EA+ F + L E A ++A Sbjct: 125 SRMAIDTFHGWFGGLLRGAPLSSGVPQGASLREDAGRLRREAWAPFWRRLLAEEHAELRA 184 Query: 190 ALLELYELAGDFNARQLLDAFIDKRAEWWAATQDDDQEDEEGAEEHAAPAPLRWLQALCG 249 A L +L GDF A +LLDA +R++WWA + A PL L L G Sbjct: 185 AYDTLVDLVGDFQAGRLLDAMFAQRSDWWAY------------KAQAGAHPLGPLDDLLG 232 Query: 250 ADAQRDARLSLWEEHALVARPSQLAILLGQGGSANQARAVAIESALSAGPALE------- 302 DA D + ++ AL+A +++ LGQGG+A RAV IE+A +A AL+ Sbjct: 233 DDAHTDPLIEALQDAALLADMLRVSAWLGQGGAAEGKRAVQIETAATAARALDLSDAAAR 292 Query: 303 --HFDALYSQFFDDKDKPRKNGKVKSLLAALVQHFEASEDAALAAFEAEFNAVGEALRKL 360 F+ L++ F KPR K+L+ A+ E A + + EAL Sbjct: 293 HDAFETLFTAFHTQAGKPRACKPTKALVKAI------GEGNAQTLVDLH-GTLCEALAAY 345 Query: 361 QGRSKEKDVLQLNAALFTAGRAYLACYQEVKAEQRVLDFADLEWQAYRLLRNEASAAYLQ 420 R E V +NAALFT G A + YQ K + R +DF DLEW+A RL+R+E +AAYLQ Sbjct: 346 HARRHESRVRAINAALFTLGDALIERYQAYKRQARAMDFTDLEWEAARLMRDEDTAAYLQ 405 Query: 421 TRLDARYKHILLDEFQDTNPLQWCIVRCWLDAYGGDAAQPSVFVVGDPKQSIYRFRRAEP 480 RLDARYKH+LLDEFQDTNP+QW I++ WL Y G +P+VF+VGDPKQSIYRFRRA+ Sbjct: 406 VRLDARYKHLLLDEFQDTNPMQWRILQGWLRGYEGTGTRPTVFLVGDPKQSIYRFRRADA 465 Query: 481 RVFVAAREMLRAQ-GAAILRANQTRRNATAVVDVLNRSFVM----GGNPLFSQQTT-LGL 534 R+F AAR+ML A A +LR N+TRRNA AV++ +N F+ G ++++Q+T + Sbjct: 466 RLFDAARDMLVAGFDATVLRTNRTRRNAPAVLEWVNAVFLQARARGDYAIYAEQSTAVDA 525 Query: 535 AGGEVWRLPLARPDDGAENVSSADPDAASAAPEGEQ--EVIPWRNPLTTPRGEEDDARRL 592 G+ LPL PE Q E P R+ LT PR E D++R Sbjct: 526 PAGQALLLPLV------------------PVPEAVQTGETAP-RDSLTEPREEAGDSQRY 566 Query: 593 LEGQALAQALLKAYREVPVVEGKGARSMRWGDIMLLVRKRTHLAAYESALRAAGIPFISD 652 EG+ +A L + V E G R +RW D LLVR++ +LA YE ALR AG+P++S Sbjct: 567 DEGRQVAACLRALHAGERVRENGGERPVRWSDFQLLVRRKRYLADYERALRDAGVPYLSP 626 Query: 653 KRGGLLESLEIADLIALLTFLITPNDTRALAHVLKSPIISATDDDLVQIARRAAQAEGGH 712 +RGGLL +LE DL ALL FL+TP LAHVL+SPI + TDDDL+ +A+ A Sbjct: 627 RRGGLLATLEALDLCALLDFLMTPQADLPLAHVLRSPIFAVTDDDLIALAQTGEGASAPT 686 Query: 713 WWQQLQAMQQEGAASAALVRAVTLLQRWLLAAPHLPVHDLLDMILHQGELVAHYAQHASP 772 WW++L A+ + A+A L A LL RWL AP LPVHDLLD I++ GEL YA+ Sbjct: 687 WWERLTALAGQPHAAAQLRHAHRLLSRWLAVAPTLPVHDLLDHIVYTGELKRRYAERVPE 746 Query: 773 LTRSQTLGNIAAFVELSLNMDAGRYPSLPKFIDALRVLQRSAGGDAPDEA---------- 822 R Q L N+ AF++L+L++D GRYPSLPKF+ LR +++ ++PDE Sbjct: 747 ANREQALANLDAFLKLALDLDGGRYPSLPKFMAELRAIRQGDEEESPDEGVQGDAAEAPD 806 Query: 823 SVDA-----SADAVRILTVHSAKGLEAPVVAILDANHSDSVEDNLGILCAWPQDEDAPTH 877 ++DA DAV+ILTVH++KGLEAP V +LD++HSD+ D GIL W +AP H Sbjct: 807 AIDAELASEGLDAVQILTVHASKGLEAPFVVLLDSHHSDTRADTAGILIDWLPGAEAPAH 866 Query: 878 FSAFGRRSERGSARDPLFEEEETLRTQEDWNLLYVAVTRAKQLLLVSGVAGTRGAGAGGV 937 FSAFG+ +ERG ARDPLF +E L +E+WNLLYVA+TRA+Q L+VSGVA R A V Sbjct: 867 FSAFGKTAERGRARDPLFAQEAALAERENWNLLYVAMTRARQALIVSGVANKRDGAAAQV 926 Query: 938 V----------QGSWYQRL----FASDAP--VREISEEAVHGAEAADIEERFSLALFDPR 981 V SWY L AS AP + +AVH A F + Sbjct: 927 VDEGDVPEVDGSASWYTLLATAGVASPAPAAQADAGGDAVHAGPQAVSYHDFRV------ 980 Query: 982 PLPMSL-FGAPADDPQDAVPALTADGALVSTDAIDEGVALHALLERLTHGHAWPLHVPSA 1040 PL +++ G A+ DA A A+ A+ +G LHA+LERLT H P VP A Sbjct: 981 PLTVTVRIGGTAERVADAP---NAADAIFDQGAVAQGELLHAVLERLTR-HGKPEQVPDA 1036 Query: 1041 SVLVRWL---GISAEMAQVVHAQAREVLAQPQLERFFNPALHRWARNEMEIVTPNG-LMR 1096 + + RW GI+ A R +LA L F+ A A NE+E+ +P+G L+R Sbjct: 1037 AAIARWFGATGITDADAARAAEAVRRMLAAEALAHVFDAARFDVAHNEVELFSPDGALLR 1096 Query: 1097 LDRVVMFDDELWVIDYKRRLLDSERADYAAQLGRYRSALMSVFSDKQIRSALITAEGALI 1156 +DR++ DE+ V+DYK RLL ERA YA QL Y +A+ ++ + +R+ + TA+G I Sbjct: 1097 IDRLIERGDEVLVVDYKLRLLPVERAAYADQLRGYVAAVAPMYPGRTVRAGVATAQGEWI 1156 Query: 1157 E 1157 + Sbjct: 1157 D 1157