BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0004.0007.p (741 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J051.1 D8J051_HERSS RNA polymerase sigma factor 1516 0.0 A4G2C2.2 A4G2C2_HERAR RNA polymerase sigma factor 1252 0.0 A6SV86.1 A6SV86_JANMA RNA polymerase sigma factor 1238 0.0 F1VZ24.1 F1VZ24_9BURK RNA polymerase sigma factor RpoD 1223 0.0 C3X4K6.1 C3X4K6_OXAFO RNA polymerase sigma factor 1118 0.0 C3XAR3.1 C3XAR3_OXAFO RNA polymerase sigma factor 1102 0.0 E5APH9.1 E5APH9_BURRH RNA polymerase sigma factor 1015 0.0 Q1LK43.1 Q1LK43_RALME RNA polymerase sigma factor 1009 0.0 D8P0X1.1 D8P0X1_RALSO RNA polymerase sigma factor 1009 0.0 B9C456.1 B9C456_9BURK RNA polymerase sigma factor 1005 0.0 >D8J051.1 D8J051_HERSS RNA polymerase sigma factor Length = 850 Score = 1516 bits (3926), Expect = 0.0, Method: Compositional matrix adjust. Identities = 741/741 (100%), Positives = 741/741 (100%) Query: 1 VTTKKPETKTAKTTKAAKVEGKDVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRR 60 VTTKKPETKTAKTTKAAKVEGKDVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRR Sbjct: 110 VTTKKPETKTAKTTKAAKVEGKDVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRR 169 Query: 61 GRKPKEFQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELE 120 GRKPKEFQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELE Sbjct: 170 GRKPKEFQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELE 229 Query: 121 RRRQKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAE 180 RRRQKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAE Sbjct: 230 RRRQKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAE 289 Query: 181 TLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEI 240 TLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEI Sbjct: 290 TLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEI 349 Query: 241 AKRIEDGLKDMIQAISACPTTIAEILAAAERISKDEIKVDEIVDGLVDPNESEQQVEAAS 300 AKRIEDGLKDMIQAISACPTTIAEILAAAERISKDEIKVDEIVDGLVDPNESEQQVEAAS Sbjct: 350 AKRIEDGLKDMIQAISACPTTIAEILAAAERISKDEIKVDEIVDGLVDPNESEQQVEAAS 409 Query: 301 SDSDEDDEDEEEEEEDEEEEESESTGSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRK 360 SDSDEDDEDEEEEEEDEEEEESESTGSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRK Sbjct: 410 SDSDEDDEDEEEEEEDEEEEESESTGSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRK 469 Query: 361 AFEKEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVN 420 AFEKEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVN Sbjct: 470 AFEKEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVN 529 Query: 421 KCNMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVL 480 KCNMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVL Sbjct: 530 KCNMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVL 589 Query: 481 PLQDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 540 PLQDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM Sbjct: 590 PLQDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLM 649 Query: 541 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQE 600 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQE Sbjct: 650 KAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQE 709 Query: 601 TGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPAD 660 TGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPAD Sbjct: 710 TGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPAD 769 Query: 661 AALHASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAK 720 AALHASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAK Sbjct: 770 AALHASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAK 829 Query: 721 ALRKLRHPSRSDKLKSFLEGN 741 ALRKLRHPSRSDKLKSFLEGN Sbjct: 830 ALRKLRHPSRSDKLKSFLEGN 850 >A4G2C2.2 A4G2C2_HERAR RNA polymerase sigma factor Length = 800 Score = 1252 bits (3239), Expect = 0.0, Method: Compositional matrix adjust. Identities = 644/746 (86%), Positives = 684/746 (91%), Gaps = 7/746 (0%) Query: 1 VTTKKPETKTAKTTKAAKVEGK-----DVSATAASSVSQTTDAAALAAIDTSGYVLPSVK 55 VT KK E K+ T+K+AKVE K V+ +VSQTTDAA LAAIDTSGY+LPS+K Sbjct: 57 VTNKKSEVKS--TSKSAKVEPKVESRPGVNVMITPTVSQTTDAATLAAIDTSGYILPSIK 114 Query: 56 VPGRRGRKPKEFQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEAS 115 VPGRRGRKPKEFQPE+DEVAALN +ER ELKA DKAKAKDRKAKEKALLKDAFS+DTEAS Sbjct: 115 VPGRRGRKPKEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSNDTEAS 174 Query: 116 EEELERRRQKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEH 175 EEELE RRQKLKTLIK GKERGFLT++EINDHLPENI+DPEAIEGIIGTF+DMGI+VYE Sbjct: 175 EEELEARRQKLKTLIKFGKERGFLTYAEINDHLPENIIDPEAIEGIIGTFNDMGIAVYEQ 234 Query: 176 APDAETLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTRE 235 APDAETLLLSDNVA VASDD+AEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTRE Sbjct: 235 APDAETLLLSDNVATVASDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTRE 294 Query: 236 GEIEIAKRIEDGLKDMIQAISACPTTIAEILAAAERISKDEIKVDEIVDGLVDPNESEQQ 295 GEI+IAKRIEDGL+DMIQAISACPTTIAEI+AAAERISKDE K+DEIVDGLVD N SE Sbjct: 295 GEIDIAKRIEDGLRDMIQAISACPTTIAEIMAAAERISKDEAKIDEIVDGLVDMNASEPV 354 Query: 296 VEAASSDSDEDDEDEEEEEEDEEEEESESTGSGAAGFSAEQLEQLKRDALGKFAVIGTQF 355 + + + D+E+EEEEEE+ EEEE SGAAGFS+EQLEQLKRD+L KF+ I QF Sbjct: 355 IAPPAPAAASDEEEEEEEEEEAEEEEETPAASGAAGFSSEQLEQLKRDSLAKFSTIAMQF 414 Query: 356 ENMRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQIL 415 + MRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAK+VEKLCDTLR QVDEVR +E+QIL Sbjct: 415 DKMRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKVVEKLCDTLRGQVDEVRQIEKQIL 474 Query: 416 DVAVNKCNMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQ 475 D+AVN+C MPR HFIKVFPGNE NLDWVDGEV NH YS VL+RNVPA+KELQQKLIDLQ Sbjct: 475 DIAVNRCEMPRNHFIKVFPGNETNLDWVDGEVEGNHPYSIVLARNVPAVKELQQKLIDLQ 534 Query: 476 ARVVLPLQDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEG 535 ARVVLPL DLRAIN+KM AGE KAR AKREMTEANLRLVISIAKKYTNRGLQFLDLIQEG Sbjct: 535 ARVVLPLPDLRAINRKMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEG 594 Query: 536 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISR 595 NIGLMKAVDKFEYRRG+KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISR Sbjct: 595 NIGLMKAVDKFEYRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISR 654 Query: 596 QILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNT 655 QILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNT Sbjct: 655 QILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNT 714 Query: 656 LAPADAALHASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIR 715 LAPADAALHASMR VVKD+LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIR Sbjct: 715 LAPADAALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIR 774 Query: 716 QIEAKALRKLRHPSRSDKLKSFLEGN 741 QIEAKALRKLRHPSRSDKLKSFLEGN Sbjct: 775 QIEAKALRKLRHPSRSDKLKSFLEGN 800 >A6SV86.1 A6SV86_JANMA RNA polymerase sigma factor Length = 826 Score = 1238 bits (3204), Expect = 0.0, Method: Compositional matrix adjust. Identities = 645/747 (86%), Positives = 685/747 (91%), Gaps = 8/747 (1%) Query: 1 VTTKKPETKTAKTTKAAKVEGK-----DVSATAASSVSQTTDAAALAAIDTSGYVLPSVK 55 VT KK E K A +K+AKVE K V+ ++VSQTTDAA LAAIDTSGY+LPS+K Sbjct: 82 VTNKKSEVKPA--SKSAKVEPKVESRPGVNVMITATVSQTTDAATLAAIDTSGYILPSIK 139 Query: 56 VPGRRGRKPKEFQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEAS 115 VPGRRGRKPKEFQPE+DE+AALN +ER ELKA DKAKAKDRKAKEKALLKDAFSSDTEAS Sbjct: 140 VPGRRGRKPKEFQPENDEIAALNAVERAELKAVDKAKAKDRKAKEKALLKDAFSSDTEAS 199 Query: 116 EEELERRRQKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEH 175 EEELE RRQKLKTLIK GKERGFLT++EINDHLPENI+DPEAIEGIIGTF+DMGI+VYE Sbjct: 200 EEELEARRQKLKTLIKFGKERGFLTYAEINDHLPENIIDPEAIEGIIGTFNDMGIAVYEQ 259 Query: 176 APDAETLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTRE 235 APDAETLLLSDNVA VASDD+AEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTRE Sbjct: 260 APDAETLLLSDNVATVASDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTRE 319 Query: 236 GEIEIAKRIEDGLKDMIQAISACPTTIAEILAAAERISKDEIKVDEIVDGLVDPNESEQQ 295 GEI+IAKRIEDGL+DMIQAISACPTTIAEI+AAAERISKDE K+DEIVDGLVD + +E Sbjct: 320 GEIDIAKRIEDGLRDMIQAISACPTTIAEIIAAAERISKDEAKIDEIVDGLVDMDAAEPV 379 Query: 296 VEAASSDSDEDDEDEEEEEEDEEEEESESTG-SGAAGFSAEQLEQLKRDALGKFAVIGTQ 354 V + + DDE++EEEEE+EEEEE E+T SGAAGFS+EQLEQLKRD+L KF+ I Q Sbjct: 380 VAPPAPAASSDDEEDEEEEEEEEEEEEETTAASGAAGFSSEQLEQLKRDSLAKFSTIAQQ 439 Query: 355 FENMRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQI 414 F+ MRKAFEKEGYNSKPYVKAQEIISNELL IRFTAK+VEKLCDTLR QVDEVR +E+QI Sbjct: 440 FDKMRKAFEKEGYNSKPYVKAQEIISNELLSIRFTAKVVEKLCDTLRGQVDEVRHIEKQI 499 Query: 415 LDVAVNKCNMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDL 474 LDVAVN+C MPR HFIKVFPGNE NLDWVDGEV H YS VL+RNVP +KELQQKLIDL Sbjct: 500 LDVAVNRCGMPRGHFIKVFPGNETNLDWVDGEVNGKHAYSVVLARNVPTVKELQQKLIDL 559 Query: 475 QARVVLPLQDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQE 534 QARVVLPL DLRAINKKM AGE KAR AKREMTEANLRLVISIAKKYTNRGLQFLDLIQE Sbjct: 560 QARVVLPLPDLRAINKKMAAGEMKARKAKREMTEANLRLVISIAKKYTNRGLQFLDLIQE 619 Query: 535 GNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRIS 594 GNIGLMKAVDKFEYRRG+KFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRIS Sbjct: 620 GNIGLMKAVDKFEYRRGFKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRIS 679 Query: 595 RQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNN 654 RQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNN Sbjct: 680 RQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNN 739 Query: 655 TLAPADAALHASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERI 714 TLAPADAALHASMR VVKD+LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERI Sbjct: 740 TLAPADAALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERI 799 Query: 715 RQIEAKALRKLRHPSRSDKLKSFLEGN 741 RQIEAKALRKLRHPSRSDKLKSFLEGN Sbjct: 800 RQIEAKALRKLRHPSRSDKLKSFLEGN 826 >F1VZ24.1 F1VZ24_9BURK RNA polymerase sigma factor RpoD Length = 827 Score = 1223 bits (3164), Expect = 0.0, Method: Compositional matrix adjust. Identities = 634/756 (83%), Positives = 681/756 (90%), Gaps = 15/756 (1%) Query: 1 VTTKKPETK----------TAKTTKAA--KVEGK-DVSATAASSVSQTTDAAALAAIDTS 47 VTTKK ETK TAKT A KVE K V+ ++VSQTTDAA LAAIDTS Sbjct: 72 VTTKKSETKIAAKPSAKAATAKTDPKAEVKVENKPGVNVMITATVSQTTDAATLAAIDTS 131 Query: 48 GYVLPSVKVPGRRGRKPKEFQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDA 107 GY+LPS+KVPGRRGRKPKEFQPE+DEVAALN +ER ELKA DKAKAKDRKAKEKALLKDA Sbjct: 132 GYILPSIKVPGRRGRKPKEFQPENDEVAALNAVERAELKAVDKAKAKDRKAKEKALLKDA 191 Query: 108 FSSDTEASEEELERRRQKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSD 167 FSSDTEA+EEELERRRQKLKTLIKLGK+RGFLT++EINDHLPENIVDPEAIEGIIGTF+D Sbjct: 192 FSSDTEATEEELERRRQKLKTLIKLGKDRGFLTYAEINDHLPENIVDPEAIEGIIGTFND 251 Query: 168 MGISVYEHAPDAETLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMG 227 MGI+VYEHAPDAE++LL+DNVA VASDD+AEAAAEAALSTVDSDFGRTTDPVRMYMREMG Sbjct: 252 MGIAVYEHAPDAESMLLTDNVATVASDDEAEAAAEAALSTVDSDFGRTTDPVRMYMREMG 311 Query: 228 SVELLTREGEIEIAKRIEDGLKDMIQAISACPTTIAEILAAAERISKDEIKVDEIVDGLV 287 SVELLTREGEIEIAKRIEDGLKDMIQAISACPTTI+EILAAAERI+ E K+DEIVDGLV Sbjct: 312 SVELLTREGEIEIAKRIEDGLKDMIQAISACPTTISEILAAAERITNGETKIDEIVDGLV 371 Query: 288 D--PNESEQQVEAASSDSDEDDEDEEEEEEDEEEEESESTGSGAAGFSAEQLEQLKRDAL 345 D E D+++E+EEE EE+E E E+ SGAAGF+AEQ+EQLKR++L Sbjct: 372 DMLVIEVVVVPPPKVVSEDDEEEEEEEAEEEESGAEEETNASGAAGFTAEQIEQLKRESL 431 Query: 346 GKFAVIGTQFENMRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVD 405 KF I TQF+ MRKA+EKEGYNSKPYVKAQE IS+ELL IRFTAK+VEKLCDTLR QV+ Sbjct: 432 VKFQAISTQFDKMRKAYEKEGYNSKPYVKAQEAISSELLAIRFTAKVVEKLCDTLRGQVE 491 Query: 406 EVRTVERQILDVAVNKCNMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIK 465 EVR +ERQILDVAVNKC MPR+HFIKVFPGNE NLDWVDGEV+ NH YS +L RNVP +K Sbjct: 492 EVRHIERQILDVAVNKCRMPRSHFIKVFPGNETNLDWVDGEVSGNHPYSVILGRNVPTVK 551 Query: 466 ELQQKLIDLQARVVLPLQDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRG 525 ELQQKL+DLQ+RVVLPL DLRAIN++M AGE KAR AKREMTEANLRLVISIAKKYTNRG Sbjct: 552 ELQQKLLDLQSRVVLPLPDLRAINRRMAAGEMKARKAKREMTEANLRLVISIAKKYTNRG 611 Query: 526 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 585 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE Sbjct: 612 LQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIE 671 Query: 586 TINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSH 645 TINKMNRISRQILQETGAEPDPATLAIKMEMPE+KIRKIMKIAKEPISMETPIGDDDDSH Sbjct: 672 TINKMNRISRQILQETGAEPDPATLAIKMEMPEEKIRKIMKIAKEPISMETPIGDDDDSH 731 Query: 646 LGDFIEDNNTLAPADAALHASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGK 705 LGDFIEDNNTLAPADAALHASMR VVKD+LDSLTPREAKVLRMRFGIEMSTDHTLEEVGK Sbjct: 732 LGDFIEDNNTLAPADAALHASMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGK 791 Query: 706 QFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN 741 QFDVTRERIRQIEAKALRKLRHPSRSD+LKSFLEGN Sbjct: 792 QFDVTRERIRQIEAKALRKLRHPSRSDRLKSFLEGN 827 >C3X4K6.1 C3X4K6_OXAFO RNA polymerase sigma factor Length = 827 Score = 1118 bits (2892), Expect = 0.0, Method: Compositional matrix adjust. Identities = 575/746 (77%), Positives = 649/746 (86%), Gaps = 14/746 (1%) Query: 4 KKPETKTAKTTKAAKVEGKDVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRK 63 +KP+ ++ T A E +VS T TTDAA LAAIDTSGYVLP+VKVPGRRGRK Sbjct: 88 RKPKNAESQETVATASEKGNVSDTIV-----TTDAAQLAAIDTSGYVLPTVKVPGRRGRK 142 Query: 64 PKEFQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELERRR 123 PK+FQPE++EVAALN +ER E+KAADKA+AKDRKAKEKALLKDA + DTEA+EEELERRR Sbjct: 143 PKDFQPENEEVAALNAVERAEMKAADKARAKDRKAKEKALLKDALAGDTEATEEELERRR 202 Query: 124 QKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETLL 183 ++LK LIKLGKER FLT++EINDHLP+N++DP+AIEGII TF+DMGISVYEHAPDAE LL Sbjct: 203 ERLKMLIKLGKERSFLTYAEINDHLPDNVIDPDAIEGIISTFNDMGISVYEHAPDAEDLL 262 Query: 184 LSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKR 243 L+DNV V SD++AEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKR Sbjct: 263 LTDNVVTVTSDEEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKR 322 Query: 244 IEDGLKDMIQAISACPTTIAEILAAAERISKDEIKVDEIVDGLVDPNESEQQVEAASSDS 303 IE+GLKDMIQAIS+CPTTI EI+ AE+I DEI++DE+VDGL D E QV AA+SD+ Sbjct: 323 IEEGLKDMIQAISSCPTTILEIIGQAEKIRNDEIRIDEVVDGLAD-EAGESQVLAAASDN 381 Query: 304 DEDDEDEEEEEEDEEEEESESTGSGAAGFSA--------EQLEQLKRDALGKFAVIGTQF 355 D+D+ DE++ + DE + E G + EQLE+LK DAL +FA+I T F Sbjct: 382 DQDESDEDDSDADENDGEEAEEEESDGGSAGGAAAGFSAEQLEKLKEDALARFALIETYF 441 Query: 356 ENMRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQIL 415 + M++AFEK+GYNS YVKA IS+ELLG+RFTA+ +EKLCDTLR Q+D+VR +ER+IL Sbjct: 442 KEMQQAFEKDGYNSPAYVKAHNSISDELLGMRFTARFIEKLCDTLRTQMDDVRQIEREIL 501 Query: 416 DVAVNKCNMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQ 475 +VAVNKC +PRAHFIK FPGNE N++WVD EV A H YS +LSRNVP IKELQQ L+D++ Sbjct: 502 NVAVNKCGVPRAHFIKTFPGNETNMEWVDEEVHAGHPYSEILSRNVPMIKELQQNLVDIE 561 Query: 476 ARVVLPLQDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEG 535 R+ +PL DLR IN+KM AGE +AR AK+EMTEANLRLVISIAKKYTNRGLQFLDLIQEG Sbjct: 562 KRIGMPLADLREINRKMVAGEMRARKAKKEMTEANLRLVISIAKKYTNRGLQFLDLIQEG 621 Query: 536 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISR 595 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISR Sbjct: 622 NIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISR 681 Query: 596 QILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNT 655 QILQETGAEPDPATLA+KM+MPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNT Sbjct: 682 QILQETGAEPDPATLAVKMDMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNT 741 Query: 656 LAPADAALHASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIR 715 LAPADAALHASMRNVVKD+LDSLTPREAKVLRMRFG+EMSTDHTLEEVGKQFDVTRERIR Sbjct: 742 LAPADAALHASMRNVVKDVLDSLTPREAKVLRMRFGVEMSTDHTLEEVGKQFDVTRERIR 801 Query: 716 QIEAKALRKLRHPSRSDKLKSFLEGN 741 QIEAKALRKLRHPSRSDKLKSFLE N Sbjct: 802 QIEAKALRKLRHPSRSDKLKSFLESN 827 >C3XAR3.1 C3XAR3_OXAFO RNA polymerase sigma factor Length = 819 Score = 1102 bits (2851), Expect = 0.0, Method: Compositional matrix adjust. Identities = 576/744 (77%), Positives = 650/744 (87%), Gaps = 11/744 (1%) Query: 4 KKPETKTAKTTKAAKVEGKDVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRK 63 +KP+ + E +VS+T TTDAA LAAIDTSGYVLPSVKVPGRRGRK Sbjct: 81 RKPKNAVLAEPEVVLSENSNVSSTVV-----TTDAAKLAAIDTSGYVLPSVKVPGRRGRK 135 Query: 64 PKEFQPESDEVAALNTIERTELKAADKAKAKDRKAKEKALLKDAFSSDTEASEEELERRR 123 PK+FQPE++EVAALN +ER E+KA DKA+AKDRKAKEKALLKDA S D+EAS EELERRR Sbjct: 136 PKDFQPENEEVAALNAVERAEMKAVDKARAKDRKAKEKALLKDALSGDSEASMEELERRR 195 Query: 124 QKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETLL 183 ++L LIKLGKER FLT++EINDHLP+N++DP+AIEGII TF+DMGISVYE APDAE LL Sbjct: 196 ERLMILIKLGKERSFLTYAEINDHLPDNVIDPDAIEGIISTFNDMGISVYEQAPDAEELL 255 Query: 184 LSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKR 243 L+DNV V SD++AEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKR Sbjct: 256 LTDNVVTVTSDEEAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKR 315 Query: 244 IEDGLKDMIQAISACPTTIAEILAAAERISKDEIKVDEIVDGLVDPNESEQQVEAASS-- 301 IE+GL+DMI AIS+CPTTI EI+ AE+I DE+K+DE+VDGL D E + +S Sbjct: 316 IEEGLRDMISAISSCPTTILEIIDQAEKIRADEVKIDEVVDGLADDEEGSENAALNASAS 375 Query: 302 ----DSDEDDEDEEEEEEDEEEEESESTGSGAAGFSAEQLEQLKRDALGKFAVIGTQFEN 357 DSDE+D DEE+ +++E++EES S G AAGFSAEQLE+LK +ALGKFAVIG F+ Sbjct: 376 DSDEDSDEEDSDEEDSDDEEDDEESGSAGGAAAGFSAEQLEKLKDEALGKFAVIGAHFKE 435 Query: 358 MRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDV 417 M+++FEK+GYNS Y++A E IS ELL +RFTA+ +EKLCDTLRAQ+DEVR +ER+IL+V Sbjct: 436 MQQSFEKDGYNSPAYLQAHESISAELLTMRFTARFIEKLCDTLRAQMDEVRQIEREILNV 495 Query: 418 AVNKCNMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQAR 477 VNKC +PRAHFIK FPGNE +L W+D EV A+H YSA+L RNVP +KELQQKL+D+Q R Sbjct: 496 VVNKCGVPRAHFIKTFPGNETDLTWIDEEVEADHPYSAILERNVPMVKELQQKLVDIQNR 555 Query: 478 VVLPLQDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 537 + +PL DLR IN+KM AGE +AR AK+EMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI Sbjct: 556 IGMPLADLREINRKMVAGEMRARKAKKEMTEANLRLVISIAKKYTNRGLQFLDLIQEGNI 615 Query: 538 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 597 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI Sbjct: 616 GLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQI 675 Query: 598 LQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLA 657 LQETGAEPDPATLA+KMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLA Sbjct: 676 LQETGAEPDPATLAVKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLA 735 Query: 658 PADAALHASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQI 717 P+DAALHASMRNVVKD+LDSLTPREAKVLRMRFG+EMSTDHTLEEVGKQFDVTRERIRQI Sbjct: 736 PSDAALHASMRNVVKDVLDSLTPREAKVLRMRFGVEMSTDHTLEEVGKQFDVTRERIRQI 795 Query: 718 EAKALRKLRHPSRSDKLKSFLEGN 741 EAKALRKLRHPSRSDKLKSFLE N Sbjct: 796 EAKALRKLRHPSRSDKLKSFLESN 819 >E5APH9.1 E5APH9_BURRH RNA polymerase sigma factor Length = 778 Score = 1015 bits (2624), Expect = 0.0, Method: Compositional matrix adjust. Identities = 514/654 (78%), Positives = 575/654 (87%), Gaps = 1/654 (0%) Query: 88 ADKAKAKDRKAKEKALLKDAFSSDTEASEEELERRRQKLKTLIKLGKERGFLTFSEINDH 147 +K KA+DR+AKEKALLK+AF+S + EELE RR KL+ LIKLGKERGFLT++EINDH Sbjct: 126 GEKIKARDRRAKEKALLKEAFASHQPGTAEELEERRSKLRALIKLGKERGFLTYAEINDH 185 Query: 148 LPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETLLLSDNVANVASDDDAEAAAEAALST 207 LP+N + EAIE II TF+DMG++VYE APDAETLLL+DN +V+SDD+ E AE ALST Sbjct: 186 LPDNFAETEAIESIISTFNDMGVAVYEQAPDAETLLLNDNAPSVSSDDEVEEEAEVALST 245 Query: 208 VDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMIQAISACPTTIAEILA 267 VDS+FGRTTDPVRMYMREMG+VELLTREGEIEIAKRIEDGLK M+QAISACPTTIA+ILA Sbjct: 246 VDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLKHMVQAISACPTTIADILA 305 Query: 268 AAERISKDEIKVDEIVDGLVDPNESEQQVEAASSDSDEDDEDEEEEEEDEEEEESESTGS 327 AER++ DEI+VDE+VDGL+DPN +E ++SD+DE + + ++ +E +EEEE E G+ Sbjct: 306 MAERVANDEIRVDELVDGLIDPN-AEDADGFSASDADEIESEADDADEGDEEEEEEDEGA 364 Query: 328 GAAGFSAEQLEQLKRDALGKFAVIGTQFENMRKAFEKEGYNSKPYVKAQEIISNELLGIR 387 GAA SA QLE LKR +L +FA+IG F+ MR+A+EKEGY SK Y+KAQE I EL+ IR Sbjct: 365 GAAAASAAQLEALKRASLERFALIGEWFDKMRRAYEKEGYKSKSYLKAQEAIQAELMSIR 424 Query: 388 FTAKIVEKLCDTLRAQVDEVRTVERQILDVAVNKCNMPRAHFIKVFPGNEVNLDWVDGEV 447 FTA+ VE+LCDTLRAQVDEVR VERQIL + V+KC MPRA FI FP NE NLDW + V Sbjct: 425 FTARTVERLCDTLRAQVDEVRQVERQILHIVVDKCGMPRAEFIARFPSNETNLDWAEQIV 484 Query: 448 AANHDYSAVLSRNVPAIKELQQKLIDLQARVVLPLQDLRAINKKMGAGEKKARMAKREMT 507 A H YSAVL RN+PAI+E QQ+LIDLQARVVLPL+DL+ N++M AGE KAR AKREMT Sbjct: 485 AEGHPYSAVLERNIPAIREQQQRLIDLQARVVLPLKDLKETNRQMAAGELKARQAKREMT 544 Query: 508 EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT 567 EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT Sbjct: 545 EANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAIT 604 Query: 568 RSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKI 627 RSIADQARTIRIPVHMIETINKMNRISRQILQETG EPDPATLA KMEMPEDKIRKIMKI Sbjct: 605 RSIADQARTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKIMKI 664 Query: 628 AKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHASMRNVVKDILDSLTPREAKVLR 687 AKEPISMETPIGDDDDSHLGDFIEDNNT+APADAALHASMR+VVKD+LDSLTPREAKVLR Sbjct: 665 AKEPISMETPIGDDDDSHLGDFIEDNNTVAPADAALHASMRDVVKDVLDSLTPREAKVLR 724 Query: 688 MRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN 741 MRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN Sbjct: 725 MRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN 778 >Q1LK43.1 Q1LK43_RALME RNA polymerase sigma factor Length = 855 Score = 1009 bits (2610), Expect = 0.0, Method: Compositional matrix adjust. Identities = 518/706 (73%), Positives = 585/706 (82%), Gaps = 22/706 (3%) Query: 52 PSVKV-PGRRGRKPK---------------EFQPESDEVAALNTIERTELKAADKAKAKD 95 P+VK P +RGRKPK EF ++D A +TE K KAKD Sbjct: 156 PAVKPEPKKRGRKPKAEMQQDDSTIEDVTEEFY-DNDAPATPAAAPKTE-----KQKAKD 209 Query: 96 RKAKEKALLKDAFSSDTEASEEELERRRQKLKTLIKLGKERGFLTFSEINDHLPENIVDP 155 RKAKEKALLK+ SS+ SEEELE RRQKLK LIKLGK RG+LT++EINDHLP+++VD Sbjct: 210 RKAKEKALLKEFASSNQAGSEEELEIRRQKLKALIKLGKSRGYLTYAEINDHLPDDMVDS 269 Query: 156 EAIEGIIGTFSDMGISVYEHAPDAETLLLSDNVANVASDDDAEAAAEAALSTVDSDFGRT 215 E I+ ++ T +D+GI+VYE APDAETLLL+DN + S+++AE AEAALSTVDS+FGRT Sbjct: 270 ETIDTLVATLNDIGIAVYEQAPDAETLLLNDNAPSATSEEEAEEEAEAALSTVDSEFGRT 329 Query: 216 TDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMIQAISACPTTIAEILAAAERISKD 275 TDPVRMYMREMG+VELLTREGEIEIAKRIE GLKDM+ AISACP TI+EILA+AER++ + Sbjct: 330 TDPVRMYMREMGTVELLTREGEIEIAKRIEAGLKDMVMAISACPVTISEILASAERVANE 389 Query: 276 EIKVDEIVDGLVDPNESEQQVEAASSDSDEDDEDEEEEEEDEEEEESESTGSGAAGFSAE 335 EIK+DE VDGL+DPN E Q + + DDEDE+ +E+ ++ EE + G AG SA Sbjct: 390 EIKIDEFVDGLIDPNAEEVQDNSPAQAVAADDEDEDSDEDGDDGEEEDDESGGGAGASAR 449 Query: 336 QLEQLKRDALGKFAVIGTQFENMRKAFEKEGYNSKPYVKAQEIISNELLGIRFTAKIVEK 395 QLE+LK AL KF VI QF+ MR+AFEKEGY SKPYVKAQE I EL+ IRFTA+ VE+ Sbjct: 450 QLEELKVAALEKFRVIAEQFDKMRRAFEKEGYKSKPYVKAQEAIQAELMSIRFTARNVER 509 Query: 396 LCDTLRAQVDEVRTVERQILDVAVNKCNMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSA 455 LCDTLR QVDEVR +ER IL++ V+KC MPRA F+ FPGNE NLDW+ VA N YS Sbjct: 510 LCDTLRGQVDEVRKLERAILNIVVDKCGMPRADFVARFPGNETNLDWIQTIVADNKSYST 569 Query: 456 VLSRNVPAIKELQQKLIDLQARVVLPLQDLRAINKKMGAGEKKARMAKREMTEANLRLVI 515 ++ RNVPA+ ELQQKLIDLQ+RVVLPL++L+ +N+KM GEK+AR AKREMTEANLRLVI Sbjct: 570 IVERNVPAVHELQQKLIDLQSRVVLPLKELKDVNRKMSEGEKRAREAKREMTEANLRLVI 629 Query: 516 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 575 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR Sbjct: 630 SIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQAITRSIADQAR 689 Query: 576 TIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKIMKIAKEPISME 635 TIRIPVHMIETINKMNRISRQILQETG EPDPATLA KMEMPEDKIRKIMKIAKEPISME Sbjct: 690 TIRIPVHMIETINKMNRISRQILQETGNEPDPATLAEKMEMPEDKIRKIMKIAKEPISME 749 Query: 636 TPIGDDDDSHLGDFIEDNNTLAPADAALHASMRNVVKDILDSLTPREAKVLRMRFGIEMS 695 TPIGDDDDSHLGDFIED NTLAPA+AAL SMR+VVKD+LDSLTPREAKVLRMRFGIEMS Sbjct: 750 TPIGDDDDSHLGDFIEDTNTLAPAEAALDGSMRDVVKDVLDSLTPREAKVLRMRFGIEMS 809 Query: 696 TDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN 741 TDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN Sbjct: 810 TDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN 855 >D8P0X1.1 D8P0X1_RALSO RNA polymerase sigma factor Length = 876 Score = 1009 bits (2608), Expect = 0.0, Method: Compositional matrix adjust. Identities = 523/739 (70%), Positives = 603/739 (81%), Gaps = 15/739 (2%) Query: 8 TKTAKTTKAAKVEGKDVSATAASSVSQTTDAAALAAIDTSGYVLPSVKVPGRRGRKPKEF 67 T TAK TKAA+ + + A ++ + T+ AA P +RGRKP+ Sbjct: 148 TSTAKPTKAAEADTRHTVREAEATPTPTSPVPRAAA----------AAEPKKRGRKPRAE 197 Query: 68 QPESDEVAALNTIERTELKAA-----DKAKAKDRKAKEKALLKDAFSSDTEASEEELERR 122 DE + T E E AA DK KA+DRKAKEKALLK+ ++ SEEELE R Sbjct: 198 TQADDESSTDVTEEFDEAPAAPAPKSDKQKARDRKAKEKALLKEFAATQQGGSEEELEAR 257 Query: 123 RQKLKTLIKLGKERGFLTFSEINDHLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETL 182 RQKLK LIKLGK RG+LT++EINDHLP+++VD E+++ ++ T +D+GI+VYE APDAETL Sbjct: 258 RQKLKALIKLGKSRGYLTYAEINDHLPDDMVDAESMDTLVATLNDIGIAVYEQAPDAETL 317 Query: 183 LLSDNVANVASDDDAEAAAEAALSTVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAK 242 LL+DN +V ++++AE AEAALSTVDS+FGRTTDPVRMYMREMG+VELLTREGEIEIAK Sbjct: 318 LLNDNAPSVTTEEEAEEEAEAALSTVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAK 377 Query: 243 RIEDGLKDMIQAISACPTTIAEILAAAERISKDEIKVDEIVDGLVDPNESEQQVEAASSD 302 RIE GLKDM+ AISACP TI+EILA ER++ DE K+DE +DGL+DPN + A++D Sbjct: 378 RIEAGLKDMVMAISACPVTISEILAMGERVANDEAKIDEYIDGLIDPNADAEAAAQAAAD 437 Query: 303 SDEDDEDEEEEEEDEEEEESESTGSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRKAF 362 DE+ EDEE EE +EEE+ + G+G A SA QLE+LK+ AL +F+VIG QF+ MR+AF Sbjct: 438 EDEEFEDEEAEEVGDEEEDEDDEGAGGAAASARQLEELKQAALVRFSVIGDQFDKMRRAF 497 Query: 363 EKEGYNSKPYVKAQEIISNELLGIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVNKC 422 EKEGY SKPY+KAQE I NEL+ IRFTA+ VE+LCDTLR QVDEVR +ER IL++ V+KC Sbjct: 498 EKEGYKSKPYLKAQESIQNELMAIRFTARTVERLCDTLRGQVDEVRKLERAILNIVVDKC 557 Query: 423 NMPRAHFIKVFPGNEVNLDWVDGEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVLPL 482 MPR F+ FPGNE NL W+D VA YSA++ RN+PA+ ELQQKLIDLQARVVLPL Sbjct: 558 GMPRGDFVSRFPGNETNLKWIDSVVADGKPYSAIVERNIPAVHELQQKLIDLQARVVLPL 617 Query: 483 QDLRAINKKMGAGEKKARMAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 542 +L+ +N+KM GE++AR AKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA Sbjct: 618 TELKDVNRKMSEGERRAREAKREMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKA 677 Query: 543 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETG 602 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETG Sbjct: 678 VDKFEYRRGYKFSTYATWWIRQAITRSIADQARTIRIPVHMIETINKMNRISRQILQETG 737 Query: 603 AEPDPATLAIKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAA 662 EPDPATLA KMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIED NTLAPA+AA Sbjct: 738 NEPDPATLAEKMEMPEDKIRKIMKIAKEPISMETPIGDDDDSHLGDFIEDTNTLAPAEAA 797 Query: 663 LHASMRNVVKDILDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAL 722 LH SMR VVKD+LDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAL Sbjct: 798 LHGSMRGVVKDVLDSLTPREAKVLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKAL 857 Query: 723 RKLRHPSRSDKLKSFLEGN 741 RKLRHPSRSDKLKSFLEG+ Sbjct: 858 RKLRHPSRSDKLKSFLEGS 876 >B9C456.1 B9C456_9BURK RNA polymerase sigma factor Length = 682 Score = 1005 bits (2599), Expect = 0.0, Method: Compositional matrix adjust. Identities = 510/657 (77%), Positives = 575/657 (87%), Gaps = 2/657 (0%) Query: 87 AADKAKAKDRKAKEKALLKDAFSSDTEASEEELERRRQKLKTLIKLGKERGFLTFSEIND 146 A K+KA+DR+AKEKALLK+AF++ T + EELE RR KL+ LIKLGKERGFLT++EIND Sbjct: 26 APGKSKARDRRAKEKALLKEAFATSTPGTAEELEERRVKLRALIKLGKERGFLTYAEIND 85 Query: 147 HLPENIVDPEAIEGIIGTFSDMGISVYEHAPDAETLLLSDNVANVASDDDAEAAAEAALS 206 HLP+N + EA+EGIIGTF+DMG++VYE APDAETLLL+DN +SDD+ E AE ALS Sbjct: 86 HLPDNFTETEALEGIIGTFNDMGVAVYEQAPDAETLLLNDNAPAASSDDEVEEEAEVALS 145 Query: 207 TVDSDFGRTTDPVRMYMREMGSVELLTREGEIEIAKRIEDGLKDMIQAISACPTTIAEIL 266 TVDS+FGRTTDPVRMYMREMG+VELLTREGEIEIAKRIEDGL+ M+ AISACPTTIA+IL Sbjct: 146 TVDSEFGRTTDPVRMYMREMGTVELLTREGEIEIAKRIEDGLRHMVMAISACPTTIADIL 205 Query: 267 AAAERISKDEIKVDEIVDGLVDPNESEQQVE--AASSDSDEDDEDEEEEEEDEEEEESES 324 A AER++ DEI+VDE+VDGL+DPN S+ + +A + ++EDEE EEE+EEEEE + Sbjct: 206 AMAERVANDEIRVDELVDGLLDPNASDTDTDGFSAKEAEEIENEDEEVEEEEEEEEEEDD 265 Query: 325 TGSGAAGFSAEQLEQLKRDALGKFAVIGTQFENMRKAFEKEGYNSKPYVKAQEIISNELL 384 G+ A +A QLE LKR +L KFA+I F+ MR+AFEKEGY SK Y+KAQE I +EL+ Sbjct: 266 DGAAQATANAAQLEALKRASLEKFALISEWFDKMRRAFEKEGYKSKSYLKAQETIQSELM 325 Query: 385 GIRFTAKIVEKLCDTLRAQVDEVRTVERQILDVAVNKCNMPRAHFIKVFPGNEVNLDWVD 444 IRFTA+ VE+LCDTLRAQVDEVR VERQIL + V+KC MPR+ FI FPGNE +LDW + Sbjct: 326 TIRFTARTVERLCDTLRAQVDEVRQVERQILHIVVDKCGMPRSEFIARFPGNETDLDWAE 385 Query: 445 GEVAANHDYSAVLSRNVPAIKELQQKLIDLQARVVLPLQDLRAINKKMGAGEKKARMAKR 504 A H YSA+LSRN+PAI+E QQ+L+DLQARVVLPL+DL+ N++M AGE KAR AKR Sbjct: 386 KIAAEGHSYSAILSRNIPAIREQQQRLLDLQARVVLPLKDLKETNRQMAAGELKARQAKR 445 Query: 505 EMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 564 EMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ Sbjct: 446 EMTEANLRLVISIAKKYTNRGLQFLDLIQEGNIGLMKAVDKFEYRRGYKFSTYATWWIRQ 505 Query: 565 AITRSIADQARTIRIPVHMIETINKMNRISRQILQETGAEPDPATLAIKMEMPEDKIRKI 624 AITRSIADQARTIRIPVHMIETINKMNRISRQILQETG EPDPATLA KMEMPEDKIRKI Sbjct: 506 AITRSIADQARTIRIPVHMIETINKMNRISRQILQETGLEPDPATLAEKMEMPEDKIRKI 565 Query: 625 MKIAKEPISMETPIGDDDDSHLGDFIEDNNTLAPADAALHASMRNVVKDILDSLTPREAK 684 MKIAKEPISMETPIGDDDDSHLGDFIED NT+APADAALHASMR+VVKD+LDSLTPREAK Sbjct: 566 MKIAKEPISMETPIGDDDDSHLGDFIEDTNTVAPADAALHASMRDVVKDVLDSLTPREAK 625 Query: 685 VLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN 741 VLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN Sbjct: 626 VLRMRFGIEMSTDHTLEEVGKQFDVTRERIRQIEAKALRKLRHPSRSDKLKSFLEGN 682