BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0004.0004.p         (50 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8ITD9.1 D8ITD9_HERSS HipA domain-containing protein                   97   7e-19

>D8ITD9.1 D8ITD9_HERSS HipA domain-containing protein
          Length = 439

 Score = 97.1 bits (240), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 44/50 (88%), Positives = 46/50 (92%)

Query: 1   LAPHFEDVPAAKMTIVRWALFNRMIGNSDAHGKNISFRQTANGIMPAPFY 50
           LAPHFED  AAK+ IVRWALFN +IGNSDAHGKNISFRQTANGIMPAPFY
Sbjct: 293 LAPHFEDASAAKLLIVRWALFNLLIGNSDAHGKNISFRQTANGIMPAPFY 342