BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0002.0150.p         (57 letters)

Database: pfamseq 
           15,929,002 sequences; 5,169,768,107 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D8J1B7.1 D8J1B7_HERSS Nitrogen fixation protein                       115   3e-24
A4G5L7.1 A4G5L7_HERAR Putative Cytochrome oxidase maturation pro...    83   2e-14
A6SYH3.1 A6SYH3_JANMA Nitrogen fixation protein FixS                   79   2e-13
F1VW71.1 F1VW71_9BURK Type cbb3 cytochrome oxidase biogenesis pr...    65   2e-09
Q7NWE9.1 Q7NWE9_CHRVO Nitrogen fixation protein                        65   3e-09

>D8J1B7.1 D8J1B7_HERSS Nitrogen fixation protein
          Length = 57

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 57/57 (100%), Positives = 57/57 (100%)

Query: 1  MEALYLLIPLSTLLVFLAIWVFFRASDSGQFDDLEGPAMRILHDDDAAVPQEPSGGA 57
          MEALYLLIPLSTLLVFLAIWVFFRASDSGQFDDLEGPAMRILHDDDAAVPQEPSGGA
Sbjct: 1  MEALYLLIPLSTLLVFLAIWVFFRASDSGQFDDLEGPAMRILHDDDAAVPQEPSGGA 57


>A4G5L7.1 A4G5L7_HERAR Putative Cytochrome oxidase maturation protein
          cbb3-type
          Length = 50

 Score = 82.8 bits (203), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 40/46 (86%), Positives = 42/46 (91%)

Query: 1  MEALYLLIPLSTLLVFLAIWVFFRASDSGQFDDLEGPAMRILHDDD 46
          MEALYLLIPLS L+VFLAIWVFFRASDSGQFDDL+GP  RIL DDD
Sbjct: 1  MEALYLLIPLSILIVFLAIWVFFRASDSGQFDDLKGPGARILQDDD 46


>A6SYH3.1 A6SYH3_JANMA Nitrogen fixation protein FixS
          Length = 50

 Score = 79.3 bits (194), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/46 (82%), Positives = 42/46 (91%)

Query: 1  MEALYLLIPLSTLLVFLAIWVFFRASDSGQFDDLEGPAMRILHDDD 46
          MEALYLLIPLST LVF AIW+FF+ASDSGQF+DL+GPA RIL DDD
Sbjct: 1  MEALYLLIPLSTGLVFFAIWLFFKASDSGQFEDLQGPAERILQDDD 46


>F1VW71.1 F1VW71_9BURK Type cbb3 cytochrome oxidase biogenesis protein
          CcoS, involved in heme b insertion
          Length = 59

 Score = 65.5 bits (158), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 33/54 (61%), Positives = 41/54 (75%), Gaps = 2/54 (3%)

Query: 1  MEALYLLIPLSTLLVFLAIWVFFRASDSGQFDDLEGPAMRILHDDD--AAVPQE 52
          MEAL+LL+PLS  +VF AIW FF ASD+GQFDDL  P  R+L DDD  +A P++
Sbjct: 1  MEALFLLVPLSIGVVFAAIWFFFGASDNGQFDDLVSPGWRVLQDDDRPSAKPKD 54


>Q7NWE9.1 Q7NWE9_CHRVO Nitrogen fixation protein
          Length = 56

 Score = 65.5 bits (158), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 33/56 (58%), Positives = 42/56 (75%)

Query: 1  MEALYLLIPLSTLLVFLAIWVFFRASDSGQFDDLEGPAMRILHDDDAAVPQEPSGG 56
          ME+LYLLIPLS +LVF+   +F+ A+ SGQFDD++GPA RIL DDDA    + S G
Sbjct: 1  MESLYLLIPLSLVLVFVIGAIFWWATRSGQFDDMQGPAHRILMDDDATHEDDKSSG 56