BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0136.p (170 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J1A3.1 D8J1A3_HERSS Transcription regulator protein 333 4e-90 B5RVU7.1 B5RVU7_RALSO Putative uncharacterized protein 134 3e-30 D8NYL6.1 D8NYL6_RALSO Putative transcription regulator protein, ... 134 4e-30 B5SHV3.1 B5SHV3_RALSO Putative uncharacterized protein 134 4e-30 A3RRZ1.1 A3RRZ1_RALSO Transcriptional regulator, MarR family 134 4e-30 D8NNX8.1 D8NNX8_RALSO Putative transcription regulator protein, ... 132 2e-29 D8N6T7.1 D8N6T7_RALSO Putative transcription regulator protein, ... 128 3e-28 Q8XVV2.1 Q8XVV2_RALSO Putative transcription regulator protein 124 4e-27 C3MA50.1 C3MA50_RHISN Putative MarR-family transcriptional regul... 115 2e-24 A6U7V2.1 A6U7V2_SINMW Transcriptional regulator, MarR family 114 5e-24 >D8J1A3.1 D8J1A3_HERSS Transcription regulator protein Length = 170 Score = 333 bits (855), Expect = 4e-90, Method: Compositional matrix adjust. Identities = 166/170 (97%), Positives = 168/170 (98%) Query: 1 MSTPFTSDHTAAAEALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLAT 60 MSTPFTSDHTAAA+ALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLAT Sbjct: 1 MSTPFTSDHTAAADALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLAT 60 Query: 61 AFGFAPRTITEAIDALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDGL 120 AFGFAPRTITEAIDALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDGL Sbjct: 61 AFGFAPRTITEAIDALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDGL 120 Query: 121 FTALDADEVRTLTQVLGKLNVRLAELEEAYCATGQAGTEAAPGKRGRRKE 170 FTALDADEV TLTQVLGKLNVRLAELEEAYCA G+AGTEAAPGKRGRRKE Sbjct: 121 FTALDADEVHTLTQVLGKLNVRLAELEEAYCAKGEAGTEAAPGKRGRRKE 170 >B5RVU7.1 B5RVU7_RALSO Putative uncharacterized protein Length = 159 Score = 134 bits (338), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 67/135 (49%), Positives = 94/135 (69%) Query: 15 ALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLATAFGFAPRTITEAID 74 ALRDFY+RS R LDK++A +G S AR +++ I VR+ DL AFG+APRTITEA+D Sbjct: 16 ALRDFYLRSQRVLDKVLAEQGISWARLRLIYCIRLQGSVRSVDLMRAFGYAPRTITEALD 75 Query: 75 ALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDGLFTALDADEVRTLTQ 134 ALERDGLV+R D DRR K+I+LT AG + +++EP+++ + LDA E R L + Sbjct: 76 ALERDGLVERVPDPVDRRAKNISLTPAGEALCKSAEPIRRQLGAEVCGVLDAQEQRVLQE 135 Query: 135 VLGKLNVRLAELEEA 149 +L ++ RLA +E+A Sbjct: 136 MLTRMTQRLATIEQA 150 >D8NYL6.1 D8NYL6_RALSO Putative transcription regulator protein, MarR family Length = 157 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 68/135 (50%), Positives = 92/135 (68%) Query: 15 ALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLATAFGFAPRTITEAID 74 ALRDFY+RS LDKL+A +G S AR K++ I VR+ DL AFG+APRTITEA+D Sbjct: 16 ALRDFYIRSQSVLDKLLAEKGISWARMKLIYFIRLQGSVRSVDLMRAFGYAPRTITEAVD 75 Query: 75 ALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDGLFTALDADEVRTLTQ 134 ALERDGLV+R D DRR K+I+LT AG + +++EP+++ + LDA E R L Sbjct: 76 ALERDGLVERVPDPVDRRAKNISLTRAGEALCKSAEPIRRQLSAEVCGVLDAKEQRALQD 135 Query: 135 VLGKLNVRLAELEEA 149 +L ++ RLA +E+A Sbjct: 136 MLTRMTQRLAMIEQA 150 >B5SHV3.1 B5SHV3_RALSO Putative uncharacterized protein Length = 159 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 67/135 (49%), Positives = 94/135 (69%) Query: 15 ALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLATAFGFAPRTITEAID 74 ALRDFY+RS R LDK++A +G S AR +++ I VR+ DL AFG+APRTITEA+D Sbjct: 16 ALRDFYLRSQRVLDKVLAEQGISWARLRLIYCIRLQGSVRSVDLMRAFGYAPRTITEALD 75 Query: 75 ALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDGLFTALDADEVRTLTQ 134 ALERDGLV+R D DRR K+I+LT AG + +++EP+++ + LDA E R L + Sbjct: 76 ALERDGLVERVPDPVDRRAKNISLTPAGEALCKSAEPIRRQLGVEVCGVLDAQEQRVLQE 135 Query: 135 VLGKLNVRLAELEEA 149 +L ++ RLA +E+A Sbjct: 136 MLTRMTQRLATIEQA 150 >A3RRZ1.1 A3RRZ1_RALSO Transcriptional regulator, MarR family Length = 159 Score = 134 bits (337), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 67/135 (49%), Positives = 94/135 (69%) Query: 15 ALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLATAFGFAPRTITEAID 74 ALRDFY+RS R LDK++A +G S AR +++ I VR+ DL AFG+APRTITEA+D Sbjct: 16 ALRDFYLRSQRVLDKVLAEQGISWARLRLIYCIRLQGSVRSVDLMRAFGYAPRTITEALD 75 Query: 75 ALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDGLFTALDADEVRTLTQ 134 ALERDGLV+R D DRR K+I+LT AG + +++EP+++ + LDA E R L + Sbjct: 76 ALERDGLVERVPDPVDRRAKNISLTPAGEALCKSAEPIRRQLGVEVCGVLDAQEQRVLQE 135 Query: 135 VLGKLNVRLAELEEA 149 +L ++ RLA +E+A Sbjct: 136 MLTRMTQRLATIEQA 150 >D8NNX8.1 D8NNX8_RALSO Putative transcription regulator protein, MarR family Length = 157 Score = 132 bits (331), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 67/143 (46%), Positives = 95/143 (66%) Query: 7 SDHTAAAEALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLATAFGFAP 66 S + A ALRDFY+RS R LDK++A +G S AR +++ I VR+ DL G+AP Sbjct: 8 SAYAGLAGALRDFYLRSQRVLDKVLAEQGISWARLRLIYCIRLQGSVRSVDLMRMLGYAP 67 Query: 67 RTITEAIDALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDGLFTALDA 126 RTITEA+DALERDGLV+R D DRR K+I+LT AG + +++EP+++ + LDA Sbjct: 68 RTITEALDALERDGLVERVPDPVDRRAKNISLTPAGEALCKSAEPIRRQLGAEVCGVLDA 127 Query: 127 DEVRTLTQVLGKLNVRLAELEEA 149 E R L ++L ++ RLA +E+A Sbjct: 128 QEQRVLQEMLTRMTQRLATIEQA 150 >D8N6T7.1 D8N6T7_RALSO Putative transcription regulator protein, MarR family Length = 157 Score = 128 bits (322), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 65/135 (48%), Positives = 91/135 (67%) Query: 15 ALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLATAFGFAPRTITEAID 74 ALRDFY+RS LD L+A +G S AR K++ I+ VR+ DL AFG APRT+TEA+D Sbjct: 16 ALRDFYIRSQHVLDTLLAEKGISWARMKLVYFIQHEGSVRSVDLMRAFGHAPRTVTEAVD 75 Query: 75 ALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDGLFTALDADEVRTLTQ 134 ALERDGLV+R D DRR K+I+LT AG + +++EP+++ + LD DE + L Sbjct: 76 ALERDGLVERVPDPVDRRAKNISLTRAGEALCQSAEPIRRRLAAEICGVLDPDEQQVLQD 135 Query: 135 VLGKLNVRLAELEEA 149 +L +++ RLA +E A Sbjct: 136 MLTRMSQRLAMIEAA 150 >Q8XVV2.1 Q8XVV2_RALSO Putative transcription regulator protein Length = 157 Score = 124 bits (312), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 65/135 (48%), Positives = 89/135 (65%) Query: 15 ALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLATAFGFAPRTITEAID 74 ALRDFY+RS LD L+A +G S AR K++ I VR+ DL AFG APRT+TEA+D Sbjct: 16 ALRDFYIRSQHVLDTLLAEKGISWARMKLIYFIRHEGSVRSVDLMRAFGHAPRTVTEAVD 75 Query: 75 ALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDGLFTALDADEVRTLTQ 134 ALERDGLV+R D DRR K+I+LT AG + +++EP+++ + LD E R L Sbjct: 76 ALERDGLVERVPDPVDRRAKNISLTRAGEALYQSAEPIRRRLGAEICGVLDPAEQRVLQD 135 Query: 135 VLGKLNVRLAELEEA 149 +L +++ RLA +E A Sbjct: 136 MLTRMSQRLAMIEAA 150 >C3MA50.1 C3MA50_RHISN Putative MarR-family transcriptional regulator Length = 167 Score = 115 bits (289), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 60/139 (43%), Positives = 87/139 (62%) Query: 1 MSTPFTSDHTAAAEALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLAT 60 +ST F ++ L + Y R HR +++ M EG SLAR+K L + + P R+ D+A Sbjct: 6 ISTVFMKTTFEVSDKLFELYHRVHRLVNESMTEEGVSLARSKFLFFLSKLGPCRSTDIAC 65 Query: 61 AFGFAPRTITEAIDALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDGL 120 A FAPRT+TEAID LERD LV R D DRR K +++T GR VL A+E +K ++ + Sbjct: 66 ALNFAPRTVTEAIDGLERDRLVMRKPDPDDRRAKIVSITETGRAVLMAAEHPRKQLLEEI 125 Query: 121 FTALDADEVRTLTQVLGKL 139 F+ALD +++ L ++GKL Sbjct: 126 FSALDDEQLDQLYGIVGKL 144 >A6U7V2.1 A6U7V2_SINMW Transcriptional regulator, MarR family Length = 159 Score = 114 bits (285), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 57/128 (44%), Positives = 83/128 (64%) Query: 12 AAEALRDFYVRSHRTLDKLMAGEGASLARNKMLGHIERNSPVRAADLATAFGFAPRTITE 71 ++ L + Y R HR +++ M EG SLAR+K L + + P R+ D+A A FAPRT+TE Sbjct: 7 VSDKLFELYHRVHRLVNESMTEEGVSLARSKFLFFLSKLGPCRSTDIACALNFAPRTVTE 66 Query: 72 AIDALERDGLVQRTGDISDRRVKHIALTAAGREVLRASEPVKKSFIDGLFTALDADEVRT 131 AID LERD LV R D DRR K +++T GR VL+A+E +K I+ +F+ALD +++ Sbjct: 67 AIDGLERDRLVMRKPDPEDRRAKIVSITETGRAVLQAAEHPRKQLIEEIFSALDDEQLDQ 126 Query: 132 LTQVLGKL 139 L ++ KL Sbjct: 127 LYDIVSKL 134