BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0079.p (225 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J145.1 D8J145_HERSS Sensor histidine kinase (Domains REC and H... 446 e-123 B2U868.1 B2U868_RALPJ Multi-sensor hybrid histidine kinase EC=2.... 117 1e-24 C6BM70.1 C6BM70_RALP1 Hpt sensor hybrid histidine kinase EC=2.7.... 113 2e-23 B2UH73.1 B2UH73_RALPJ Multi-sensor hybrid histidine kinase EC=2.... 113 2e-23 C6BEU3.1 C6BEU3_RALP1 Hpt sensor hybrid histidine kinase EC=2.7.... 112 3e-23 E2SYU6.1 E2SYU6_9RALS Sensor protein EvgS 112 4e-23 Q7NVE3.1 Q7NVE3_CHRVO Sensor protein evgS EC=2.7.3.- 108 4e-22 B4ELF6.1 B4ELF6_BURCJ Two-component regulatory system, sensor ki... 106 3e-21 Q6JE32.1 Q6JE32_9BURK CblT 106 3e-21 B1Z6I8.1 B1Z6I8_BURA4 Hpt sensor hybrid histidine kinase EC=2.7.... 102 5e-20 >D8J145.1 D8J145_HERSS Sensor histidine kinase (Domains REC and Hpt) protein EC=2.7.3.- Length = 233 Score = 446 bits (1147), Expect = e-123, Method: Compositional matrix adjust. Identities = 223/225 (99%), Positives = 225/225 (100%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA Sbjct: 9 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 68 Query: 61 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWCD 120 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWCD Sbjct: 69 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWCD 128 Query: 121 HECGDEGAALPPREEYARDLARLFLSTSQHDLAALQQAHRAGDQATMGKLAHRMKGAALT 180 HECGDEGAALPPREEYARDLARLFLSTSQHDLAALQQAHRAGDQATMGKLAHRMKGAALT Sbjct: 129 HECGDEGAALPPREEYARDLARLFLSTSQHDLAALQQAHRAGDQATMGKLAHRMKGAALT 188 Query: 181 MQRSEIVALLECLEEAMQDDYDTQDAITLLLTSLEKVLAASAAPG 225 MQRSEIVALLECLEEAMQDDYDTQDAI+LLL+SLEKVLAASAAPG Sbjct: 189 MQRSEIVALLECLEEAMQDDYDTQDAISLLLSSLEKVLAASAAPG 233 >B2U868.1 B2U868_RALPJ Multi-sensor hybrid histidine kinase EC=2.7.13.3 Length = 818 Score = 117 bits (293), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 78/226 (34%), Positives = 120/226 (53%), Gaps = 7/226 (3%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 L+VDD +++A+Q++L +L C+ +A G AAL + +VLLDC LP + G+ VA Sbjct: 593 LVVDDHEAVQHAIQHQLDALACRSAIAGTGEAALEQFASASFDMVLLDCNLPGIDGYTVA 652 Query: 61 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWCD 120 +++R +E++ TP++ ISA D AH C D GMDG+L KP++ A LR+++ LWC Sbjct: 653 QRMREIERQRAGE-RTPIVAISAATDDAHRIRCFDSGMDGVLGKPLRLAALRELIELWCA 711 Query: 121 HECGDEGAALPPREE---YARDLARLFLSTSQHDLAALQQAHRAGDQATMGKLAHRMKGA 177 H GD P E + D+ ++ T + DL L Q D + AHR+ GA Sbjct: 712 H--GDSARNAEPMEHDLAPSSDVLAIYRQTMKTDLEMLSQGIARRDIEQARRAAHRISGA 769 Query: 178 ALTMQRSEIVALLECLEEAMQDDY-DTQDAITLLLTSLEKVLAASA 222 A ++ L LE + D + D I LL +L+ + A A Sbjct: 770 AAVVEDLPTRNLARELERRLSDSFSDINAEIQALLVALQSLHGAEA 815 >C6BM70.1 C6BM70_RALP1 Hpt sensor hybrid histidine kinase EC=2.7.13.3 Length = 808 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/131 (45%), Positives = 84/131 (64%), Gaps = 7/131 (5%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 L+VDD +++A+Q++L +LGC+ +A G AAL R +VLLDC LP + G+ VA Sbjct: 581 LVVDDHEAVQHAIQHQLDALGCRTAIAVTGEAALEQFRPSAFDMVLLDCDLPGIDGYTVA 640 Query: 61 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWCD 120 +++R +EQ+ QR TP+I ISA D H C D GMDG+L KP++ A LR+M+ LWC Sbjct: 641 QRMRNMEQQQGQR--TPIIAISASTDDTHRVRCFDSGMDGVLAKPLRLAALREMIDLWCA 698 Query: 121 HECGDEGAALP 131 H G A+P Sbjct: 699 H-----GNAVP 704 >B2UH73.1 B2UH73_RALPJ Multi-sensor hybrid histidine kinase EC=2.7.13.3 Length = 808 Score = 113 bits (282), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 59/131 (45%), Positives = 84/131 (64%), Gaps = 7/131 (5%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 L+VDD +++A+Q++L +LGC+ +A G AAL R +VLLDC LP + G+ VA Sbjct: 581 LVVDDHEAVQHAIQHQLDALGCRTAIAVTGEAALEQFRPSAFDMVLLDCDLPGIDGYTVA 640 Query: 61 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWCD 120 +++R +EQ+ QR TP+I ISA D H C D GMDG+L KP++ A LR+M+ LWC Sbjct: 641 QRMRNMEQQQGQR--TPIIAISASTDDTHRVRCFDSGMDGVLAKPLRLAALREMIDLWCA 698 Query: 121 HECGDEGAALP 131 H G A+P Sbjct: 699 H-----GNAVP 704 >C6BEU3.1 C6BEU3_RALP1 Hpt sensor hybrid histidine kinase EC=2.7.13.3 Length = 812 Score = 112 bits (281), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 109/184 (59%), Gaps = 12/184 (6%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 L+VDD +++A+Q++L++LGC+ +A G AAL + +VLLDC LP + G+ VA Sbjct: 587 LVVDDHEAVQHAIQHQLEALGCRSAIAGTGEAALEQFASAAFDMVLLDCNLPGIDGYTVA 646 Query: 61 RQVRALE-QEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWC 119 +++R +E Q +R TP++ ISA H C D GMDG+L KP++ A LR++++LWC Sbjct: 647 QRMRNIEHQRGGER--TPIVAISAVTGDTHRVRCFDSGMDGVLSKPLRLAALRELIALWC 704 Query: 120 DHECGDEGAALPPRE---EYARDLARLFLSTSQHDLAALQQ--AHRAGDQATMGKLAHRM 174 H GD G+ E E D+ ++ T + DL L Q A R +QA + AHR+ Sbjct: 705 GH--GDSGSRTVQAERETESTVDVLAIYRETMKTDLEMLAQGLADRNIEQAR--RAAHRI 760 Query: 175 KGAA 178 GAA Sbjct: 761 SGAA 764 >E2SYU6.1 E2SYU6_9RALS Sensor protein EvgS Length = 812 Score = 112 bits (280), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 72/184 (39%), Positives = 108/184 (58%), Gaps = 12/184 (6%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 L+VDD +++A+Q++L++L C+ +A G AAL + +VLLDC LP + G+ VA Sbjct: 587 LVVDDHEAVQHAIQHQLEALACRSAIAGTGEAALERFASAAFDMVLLDCNLPGIDGYTVA 646 Query: 61 RQVRALE-QEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWC 119 +++R +E Q +R TP++ ISA D H C D GMDG+L KP++ A LR+++ LWC Sbjct: 647 QRMRNIEHQRGGER--TPIVAISAVTDDTHRVRCFDSGMDGVLSKPLRLAALRELIELWC 704 Query: 120 DHECGDEGAALPPRE---EYARDLARLFLSTSQHDLAALQQ--AHRAGDQATMGKLAHRM 174 H GD G+ E E D+ ++ T + DL L Q A R +QA + AHR+ Sbjct: 705 GH--GDSGSRTVQAERETESTVDVLAIYRETMKTDLEMLAQGLADRNIEQAR--RAAHRI 760 Query: 175 KGAA 178 GAA Sbjct: 761 SGAA 764 >Q7NVE3.1 Q7NVE3_CHRVO Sensor protein evgS EC=2.7.3.- Length = 787 Score = 108 bits (271), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 73/206 (35%), Positives = 114/206 (55%), Gaps = 16/206 (7%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAI-RAQPQGLVLLDCFLPDLPGHEV 59 L+V+D R+ + +L++LG + +A D AALA + + +VLLDC LP + G+E+ Sbjct: 565 LVVEDQPANRFVIGQQLETLGFRSVMAEDAPAALALLDQGGRFSMVLLDCNLPGIDGYEL 624 Query: 60 ARQVR---ALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLS 116 AR++R AL+ + PY P++ ISA H + CL+ GMD L KP+Q A L +L+ Sbjct: 625 ARRLRQHPALQWQ----PYLPIVAISATTGIEHQQRCLESGMDSCLSKPLQLAQLENILA 680 Query: 117 LWCDHE-CGD--EGAALPPREEYARDLARLFLSTSQHDLAALQQAHRAGDQATMGKLAHR 173 LW DH G+ E AA+ + +F ++ D++ A GD AHR Sbjct: 681 LWLDHHPAGEVHESAAI-----HGESFDAVFRRSAGEDVSRFGLALSQGDWKQADHYAHR 735 Query: 174 MKGAALTMQRSEIVALLECLEEAMQD 199 + GAAL+ RSE+ A E ++ A++D Sbjct: 736 LHGAALSAGRSELAATAERMQNALRD 761 >B4ELF6.1 B4ELF6_BURCJ Two-component regulatory system, sensor kinase protein Length = 844 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 96/178 (53%), Gaps = 6/178 (3%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 L+VDD +++A+Q++L +L C+ VA G ALA +VLLDC LPD+ G+ V Sbjct: 607 LVVDDHEAVQHAIQHQLDALACRSTVADTGEQALAQFERATFDMVLLDCNLPDIDGYTVV 666 Query: 61 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWCD 120 R++R E++ Q TP+I ISA AH C D GMDG+L KP++ LR+M+ LWC Sbjct: 667 RRMRDSERQRKQ-ARTPIIAISASTGDAHRERCFDSGMDGVLGKPLRLDALRQMIDLWCA 725 Query: 121 HECGDEGAALPP---REEYARDLARLFLSTSQHDLAALQQAHRAGDQATMGKLAHRMK 175 DE A PP + D ++ + + DLA L A D +HR+K Sbjct: 726 AGVADEIA--PPAGDTQSAKADFRAIYRQSVEADLAVLGDALSNDDAERARHASHRIK 781 >Q6JE32.1 Q6JE32_9BURK CblT Length = 844 Score = 106 bits (264), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 67/178 (37%), Positives = 96/178 (53%), Gaps = 6/178 (3%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 L+VDD +++A+Q++L +L C+ VA G ALA +VLLDC LPD+ G+ V Sbjct: 607 LVVDDHEAVQHAIQHQLDALACRSTVADTGEQALAQFERATFDMVLLDCNLPDIDGYTVV 666 Query: 61 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWCD 120 R++R E++ Q TP+I ISA AH C D GMDG+L KP++ LR+M+ LWC Sbjct: 667 RRMRDSERQRKQ-ARTPIIAISASTGDAHRERCFDSGMDGVLGKPLRLDALRQMIDLWCA 725 Query: 121 HECGDEGAALPP---REEYARDLARLFLSTSQHDLAALQQAHRAGDQATMGKLAHRMK 175 DE A PP + D ++ + + DLA L A D +HR+K Sbjct: 726 AGVADEIA--PPAGDTQSAKADFRAIYRQSVEADLAVLGDALSNDDAERARHASHRIK 781 >B1Z6I8.1 B1Z6I8_BURA4 Hpt sensor hybrid histidine kinase EC=2.7.13.3 Length = 829 Score = 102 bits (253), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 68/179 (37%), Positives = 99/179 (55%), Gaps = 2/179 (1%) Query: 1 LLVDDSATIRYAMQNRLQSLGCQVQVAADGAAALAAIRAQPQGLVLLDCFLPDLPGHEVA 60 L+VDD +R+A++++L +L C +A G ALA +VLLDC LPD+ G+ V Sbjct: 592 LVVDDHEAVRHAIEHQLDALACGSTMADTGEHALAQFERATFDMVLLDCDLPDVDGYTVV 651 Query: 61 RQVRALEQEDPQRPYTPLIGISAEADAAHVRLCLDGGMDGMLDKPVQTADLRKMLSLWCD 120 +++R +E+ D R TP++ ISA AH C D GMDG+L KP++ L +M++LWC Sbjct: 652 QRMRDIER-DQNRARTPIVAISASTGDAHRARCFDSGMDGVLGKPLRLDALHQMINLWCP 710 Query: 121 HECGDEGA-ALPPREEYARDLARLFLSTSQHDLAALQQAHRAGDQATMGKLAHRMKGAA 178 DE +P R+ D ++ + DLAAL A D AHR+KGAA Sbjct: 711 TADADEPVPPVPDRQPAKADFGTIYRQSVDADLAALDDALSNDDADRARHAAHRIKGAA 769