BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0058.p (253 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J0P0.1 D8J0P0_HERSS Outer membrane protein V (Scaffolding prot... 513 e-143 A4T0I7.1 A4T0I7_POLSQ MltA-interacting MipA family protein 216 2e-54 F1VYP2.1 F1VYP2_9BURK MltA-interacting MipA family protein 215 4e-54 D5CRT5.1 D5CRT5_SIDLE MltA-interacting MipA family protein 193 2e-47 B1XVE0.1 B1XVE0_POLNS MltA-interacting MipA family protein 137 1e-30 D0BXF8.1 D0BXF8_9GAMM MltA-interacting MipA 103 3e-20 Q1Q9I5.1 Q1Q9I5_PSYCK MltA-interacting MipA 102 5e-20 Q4FR54.1 Q4FR54_PSYA2 Putative outer membrane protein/scaffoldin... 100 2e-19 A5WG33.1 A5WG33_PSYWF MltA-interacting MipA family protein 96 5e-18 A8GI57.1 A8GI57_SERP5 MltA-interacting MipA family protein 91 1e-16 >D8J0P0.1 D8J0P0_HERSS Outer membrane protein V (Scaffolding protein for murein-synthesizing holoenzyme) protein Length = 253 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 251/253 (99%), Positives = 252/253 (99%) Query: 1 MKTIFATLSLACCALPALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNGLDRSSRTTV 60 MKTIFATLSLACCALPALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNGLDRSSRTTV Sbjct: 1 MKTIFATLSLACCALPALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNGLDRSSRTTV 60 Query: 61 LPYAYFDYGRFFARVDTFGVKTARMGYGYLELAGRINLEGFDAQGGLQRRSDPIPLGLGS 120 LPYAYFDYGRFFARVDTFGVKTARMGYGYLELAGRINLEGFDAQGGLQRRSDPIPLGLGS Sbjct: 61 LPYAYFDYGRFFARVDTFGVKTARMGYGYLELAGRINLEGFDAQGGLQRRSDPIPLGLGS 120 Query: 121 FQETPIGAFFLNVFHDFNKSHGTLAEAIYAAQLDAGPVSFYPQVGVEYRDSRYNDYFYGV 180 FQETPIGAFFLNVFHDFNKSHGTLAEAIYAAQLD GPVSFYPQVGVEYRDSRYNDYFYGV Sbjct: 121 FQETPIGAFFLNVFHDFNKSHGTLAEAIYAAQLDVGPVSFYPQVGVEYRDSRYNDYFYGV 180 Query: 181 SGQEASSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKT 240 SGQEASSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKT Sbjct: 181 SGQEASSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKT 240 Query: 241 DDLAILAMTYRFK 253 DDLAILA+TYRFK Sbjct: 241 DDLAILALTYRFK 253 >A4T0I7.1 A4T0I7_POLSQ MltA-interacting MipA family protein Length = 256 Score = 216 bits (551), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 101/250 (40%), Positives = 156/250 (62%), Gaps = 5/250 (2%) Query: 9 SLACCALPALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNGLDRSSRTTVLPYAYFDY 68 +L C + L+ + P L D + GD+G Y + + +T LPYA+ DY Sbjct: 7 TLVCLFIVLLSTSLYADEDVPDGLPDHLVGDVGIATYTTNLHIGTEGVQTLPLPYAFVDY 66 Query: 69 GRFFARVDTFGVKTARMGYGYLELAGRINLEGFDAQ----GGLQRRSDPIPLGLGSFQET 124 R F R+D G+KT +MGYGYLE+ G+INL+ + + G R+DPIPLG+G+FQET Sbjct: 67 KRAFVRIDEVGIKTLKMGYGYLEVIGKINLDSYKVKSPINGATLNRTDPIPLGIGTFQET 126 Query: 125 PIGAFFLNVFHDFNKSHGTLAEAIYAAQLDA-GPVSFYPQVGVEYRDSRYNDYFYGVSGQ 183 P+G FF+N +HDF KSHG L E +Y A+++ V+ YPQ+GVE + S+Y +Y+YG+SG Sbjct: 127 PVGGFFVNAYHDFGKSHGALYELLYFAEIETYKKVTLYPQLGVERQSSQYANYYYGISGS 186 Query: 184 EASSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKTDDL 243 ++ +G AY A ++++ + GL+ ++P+ NW N+ +RKW+ I++SP++ R D Sbjct: 187 DSLQTGYSAYTAPATSNLIAGLMIEIPVVDNWYFNIYGKRKWMGGGINNSPVMNRSFQDN 246 Query: 244 AILAMTYRFK 253 A+ YRFK Sbjct: 247 LFAALAYRFK 256 >F1VYP2.1 F1VYP2_9BURK MltA-interacting MipA family protein Length = 240 Score = 215 bits (548), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 114/241 (47%), Positives = 147/241 (60%), Gaps = 14/241 (5%) Query: 17 ALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNGLDRSSRTTVLPYAYFDYGRFFARVD 76 A AQ A PQ R+TGD G VY N S R ++LPY Y DY R FAR D Sbjct: 10 AHAQTALPQ---------RLTGDAGAAVYATTANVRGASYRPSLLPYVYADYQRLFARTD 60 Query: 77 TFGVKTARMGYGYLELAGRINLEGFDAQG----GLQRRSDPIPLGLGSFQETPIGAFFLN 132 TFGVKT +G GYLEL GR++ EG+ A GL+ RS P+PLG+G++QETP G FF+ Sbjct: 61 TFGVKTVALGAGYLELVGRVSQEGYKADSAALRGLRDRSTPVPLGIGTYQETPYGGFFVY 120 Query: 133 VFHDFNKSHGTLAEAIYAAQLDAGPVSFYPQVGVEYRDSRYNDYFYGVSGQEASSSGLPA 192 HD + S G+L EA YAA+ YPQVGVE R + Y + YGV E++ SG+ + Sbjct: 121 AMHDVS-SGGSLLEATYAAEFSFAGFKIYPQVGVERRSAAYVQHVYGVDAAESARSGIAS 179 Query: 193 YRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKTDDLAILAMTYRF 252 YRAG+ST P+ GL A++ + G W L + RR WLD AI DSP++ +T +A+TY F Sbjct: 180 YRAGASTVPVAGLAAELSLGGPWHLLVQARRSWLDAAIRDSPLVSTRTQTNGFVAVTYAF 239 Query: 253 K 253 K Sbjct: 240 K 240 >D5CRT5.1 D5CRT5_SIDLE MltA-interacting MipA family protein Length = 259 Score = 193 bits (490), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 107/248 (43%), Positives = 150/248 (60%), Gaps = 10/248 (4%) Query: 10 LACCALPALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNGLDRSSRTTVLPYAYFDYG 69 +AC L ++A A P LQ GDIG G Y + +VLPYA F+YG Sbjct: 18 MAC--LISIATMATEAAEFPGSLQ----GDIGMGAYYTHSIIRGKGDEVSVLPYADFEYG 71 Query: 70 RFFARVDTFGVKTARMGYGYLELAGRINLEGFDAQG----GLQRRSDPIPLGLGSFQETP 125 R FARVDT G+KT +MGYG+LEL GRI+ +GF G+ R IPLG+G+ Q TP Sbjct: 72 RMFARVDTLGIKTLQMGYGHLELVGRISQDGFSTNSSSLQGIASRETSIPLGIGTLQVTP 131 Query: 126 IGAFFLNVFHDFNKSHGTLAEAIYAAQLDAGPVSFYPQVGVEYRDSRYNDYFYGVSGQEA 185 +GA +N+FHD +S G EAIY ++D ++ YP +G +Y+ Y Y+YG+S QEA Sbjct: 132 LGALMVNLFHDVRRSGGDWFEAIYGGEIDLRRLTLYPLIGADYQSREYVGYYYGISPQEA 191 Query: 186 SSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKTDDLAI 245 ++S AY S + L GL+ D+ +S ++ LNL +RRKWL ++I SPI+ ++ D Sbjct: 192 AASQYAAYAPAGSLNGLFGLIGDIELSDSYHLNLYVRRKWLGSSIRQSPIVSQRYLDTGY 251 Query: 246 LAMTYRFK 253 LA++YRFK Sbjct: 252 LALSYRFK 259 >B1XVE0.1 B1XVE0_POLNS MltA-interacting MipA family protein Length = 167 Score = 137 bits (346), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 65/167 (38%), Positives = 105/167 (62%), Gaps = 5/167 (2%) Query: 92 LAGRINLEGFDAQGGLQ----RRSDPIPLGLGSFQETPIGAFFLNVFHDFNKSHGTLAEA 147 +AG+I+L+ + + + RSDPIP+G+G+ QETPIG FF N ++DF KS G L E Sbjct: 1 MAGKISLDSYKVKPPINGYGINRSDPIPIGVGTLQETPIGGFFANAYYDFGKSKGMLYEL 60 Query: 148 IYAAQLDA-GPVSFYPQVGVEYRDSRYNDYFYGVSGQEASSSGLPAYRAGSSTSPLLGLV 206 Y +L+ + YPQ+G E + ++Y +Y+YG++ E+ ++G AY A ++T+ GL+ Sbjct: 61 SYFGELETYKQIVVYPQIGAERQSNQYANYYYGINPGESLATGYSAYSAPATTNLFAGLM 120 Query: 207 ADMPISGNWRLNLTLRRKWLDNAISDSPIIRRKTDDLAILAMTYRFK 253 ++PI W +NL +RKW+ I++SP++ R D A+ YRFK Sbjct: 121 IEIPIIDQWFVNLYTKRKWMGGGINNSPVMNRPFQDTIFTAIAYRFK 167 >D0BXF8.1 D0BXF8_9GAMM MltA-interacting MipA Length = 269 Score = 103 bits (256), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 67/254 (26%), Positives = 121/254 (47%), Gaps = 15/254 (5%) Query: 3 TIFATLSLACCALPALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNGLDRSSRTTVLP 62 +I ++ +C PA AQ+++ D L + Y+ + + T+LP Sbjct: 27 SIAVAITSSCFYCPAYAQESSSPD-----LTMGFNYSVNFQAYKGHK------TYQTILP 75 Query: 63 YAYFDYGRFFARVDTFGVKTARMGYGYLELAGRINLEGFDAQGGL---QRRSDPIPLGLG 119 ++D +F+ D G + L L G + +D G L +R + G Sbjct: 76 VFFYDNDKFYIEGDDAGYYLFKDDKNQLRLDGHYDGNSYDPSGELYLLDKRKWSVLAGAS 135 Query: 120 SFQETPIGAFFLNVFHD-FNKSHGTLAEAIYAAQLDAGPVSFYPQVGVEYRDSRYNDYFY 178 + TP G F + D ++S GT+ A Y A+LD G ++ YP+ G ++ +++YN Y+Y Sbjct: 136 YMRITPYGGFKARLNTDVLSRSKGTILRASYLAELDKGNLTVYPEAGFQWNNAKYNQYYY 195 Query: 179 GVSGQEASSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDSPIIRR 238 GVS E+ SG+ AY G S SP + + A+ +S + ++ +L N SP++++ Sbjct: 196 GVSDAESKRSGIAAYEPGQSISPFVSMTANYKLSKHVNAFSSVEFNYLSNEQFKSPMVKK 255 Query: 239 KTDDLAILAMTYRF 252 +TD + +T+ F Sbjct: 256 RTDITPAVGLTFTF 269 >Q1Q9I5.1 Q1Q9I5_PSYCK MltA-interacting MipA Length = 270 Score = 102 bits (254), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 121/265 (45%), Gaps = 23/265 (8%) Query: 1 MKTIFATLSLACCALP--ALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNG---LDRS 55 + T+ AT L +L AL + P+D D ++ GV M L+ S Sbjct: 16 LNTLTATAMLGAASLSNAALFNKNLPKDPD---------AELSVGVNVMAVKSAYDLEES 66 Query: 56 SRTTVLPYAYFDYGRFFARVDTFGVKTARMGY----GYLELAGRINLEGFDAQG---GLQ 108 + VLP ++D + +AR GV G Y +LAG + + DA G GL Sbjct: 67 TEIKVLPGVFYDNNKIYARGAQAGVYLINDGSNQLAAYAQLAGN-SFDPDDATGALKGLD 125 Query: 109 RRSDPIPLGLGSFQETPIGAFFLNVFHD-FNKSHGTLAEAIYAAQLDAGPVSFYPQVGVE 167 R GL + TP+G F D ++S G A Y ++ ++ YP VG E Sbjct: 126 ERKASAAAGLSYTRLTPVGGFRAQYATDILDRSGGNTARLSYIGKISKNKLTVYPSVGFE 185 Query: 168 YRDSRYNDYFYGVSGQEASSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLD 227 Y D+ YN+Y+YGVS E++ +G+ AY A SS +P + + A+ S W +L Sbjct: 186 YNDADYNEYYYGVSDTESTRTGVAAYTANSSLNPYINVSANYDFSKRWAGFANQSLSYLP 245 Query: 228 NAISDSPIIRRKTDDLAILAMTYRF 252 N DSP++ +TD L + Y+F Sbjct: 246 NEQYDSPMVDSRTDATTTLGLLYKF 270 >Q4FR54.1 Q4FR54_PSYA2 Putative outer membrane protein/scaffolding protein MipA Length = 270 Score = 100 bits (248), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 80/265 (30%), Positives = 119/265 (44%), Gaps = 23/265 (8%) Query: 1 MKTIFATLSLACCALP--ALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNG---LDRS 55 + T+ AT L +L AL + P D ++ GV M N L+ S Sbjct: 16 LSTLTATAMLGAASLSNAALFNKNLPTVPD---------AELSVGVNVMAVNSAYDLEES 66 Query: 56 SRTTVLPYAYFDYGRFFARVDTFGVKTARMGY----GYLELAGRINLEGFDAQGGLQR-- 109 + VLP ++D R +AR GV G Y +LAG + E DA G L Sbjct: 67 TEIKVLPGVFYDNNRVYARGTQAGVYLINDGSNQLAAYTQLAGN-SFEPDDATGALSELD 125 Query: 110 -RSDPIPLGLGSFQETPIGAFFLNVFHD-FNKSHGTLAEAIYAAQLDAGPVSFYPQVGVE 167 R GL + TP+G F D ++S G +A Y ++ ++ YP VG E Sbjct: 126 ERKASAAAGLSYTRLTPVGGFRAQYATDILDRSGGNIARLSYLGKISKNKLTVYPSVGFE 185 Query: 168 YRDSRYNDYFYGVSGQEASSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLD 227 Y D+ YN Y+YGVS E++ +G+ AY A SS +P + + A+ + W +L Sbjct: 186 YHDNDYNQYYYGVSDTESTRTGVAAYTANSSLNPYINVSANYDFNKRWAGFANQSLSYLP 245 Query: 228 NAISDSPIIRRKTDDLAILAMTYRF 252 N DSP++ +TD L + Y+F Sbjct: 246 NEQYDSPMVDSRTDATTTLGLLYKF 270 >A5WG33.1 A5WG33_PSYWF MltA-interacting MipA family protein Length = 263 Score = 95.9 bits (237), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 65/222 (29%), Positives = 109/222 (49%), Gaps = 23/222 (10%) Query: 46 RMDRNGLDRSSRTTVLPYAYFDYGRFFARVDTFGVKTARMGYGYL------ELAGRINLE 99 R +++ D + T+VLP ++D G+ +AR G GYL E+AG I Sbjct: 50 RAEKSAYDMDNTTSVLPSLFYDNGQVYARGSQLG--------GYLINDDVNEVAGFIQPG 101 Query: 100 G--FD------AQGGLQRRSDPIPLGLGSFQETPIGAFFLNVFHDFN-KSHGTLAEAIYA 150 G FD A L R +G ++TP+G F + D +S GT+A Y Sbjct: 102 GSQFDPDDADGAMAQLDERKWSGMVGASYMRKTPVGGFRGQIATDVTGRSEGTVARLTYL 161 Query: 151 AQLDAGPVSFYPQVGVEYRDSRYNDYFYGVSGQEASSSGLPAYRAGSSTSPLLGLVADMP 210 A+L+ G + YP G+E+ D YN+Y+YG+S +E++ SGL Y+ SS SP + + Sbjct: 162 ARLNPGKWTIYPSAGLEWVDKNYNEYYYGISEKESAKSGLNPYKPDSSISPYVSINGTYD 221 Query: 211 ISGNWRLNLTLRRKWLDNAISDSPIIRRKTDDLAILAMTYRF 252 ++ +W + + +L + DSP++ + + + + Y F Sbjct: 222 LNKDWDIFVGQSINYLADEQRDSPMVDDRFNFTTTVGVMYEF 263 >A8GI57.1 A8GI57_SERP5 MltA-interacting MipA family protein Length = 250 Score = 91.3 bits (225), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 75/259 (28%), Positives = 112/259 (43%), Gaps = 23/259 (8%) Query: 2 KTIFATLSLACCALPALAQQAAPQDTDPLQLQDRITGDIGGGVYRMDRNGLDRSSRTTVL 61 K + LS C + PA AQ P L + + Y+ +++ R L Sbjct: 7 KLTWILLSAGCLSHPAWAQ-------SPWTLGASVL--VSPSPYQGEQD------RVMPL 51 Query: 62 PYAYFDYGRFFARVDTFGVKTARMGYGYLELAGRINLEGF-------DAQGGLQRRSDPI 114 P +D RFF + + G + L L + F DA L R + Sbjct: 52 PVIGYDSDRFFVQGLSAGAYLWKDQQNQLSLNAYYSPLHFKASDSDNDAMKQLNNRHATM 111 Query: 115 PLGLGSFQETPIGAFFLNVFHD-FNKSHGTLAEAIYAAQLDAGPVSFYPQVGVEYRDSRY 173 G+G + G + D N S+G + Y ++ G P VGV Y + + Sbjct: 112 MGGIGYRHQASWGTLRTELATDMLNNSNGFTGDVAYLYPIERGDWQLRPGVGVTYSNGKT 171 Query: 174 NDYFYGVSGQEASSSGLPAYRAGSSTSPLLGLVADMPISGNWRLNLTLRRKWLDNAISDS 233 NDY+YGVS E++ SGL AY+AGSS SP L L A ++ W +T R L N+I+DS Sbjct: 172 NDYYYGVSSDESARSGLSAYKAGSSWSPYLELSASYQLTPQWTTFITGRYTHLANSITDS 231 Query: 234 PIIRRKTDDLAILAMTYRF 252 P++ + + +TYRF Sbjct: 232 PMVDKSGSGMLWTGVTYRF 250