BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0002.0041.p (638 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8J0M4.1 D8J0M4_HERSS Chemotaxis CheA protein EC=2.7.3.- 290 6e-76 A6SWX8.1 A6SWX8_JANMA CheA chemotaxis protein EC=2.7.3.- 240 4e-61 F1W3S9.1 F1W3S9_9BURK Signal transduction histidine kinase CheA 235 2e-59 A4G3P8.1 A4G3P8_HERAR Putative chemotaxis protein CheA 234 5e-59 Q21IQ8.1 Q21IQ8_SACD2 ATP-binding region, ATPase-like protein 132 2e-28 Q0A9Z6.1 Q0A9Z6_ALHEH CheA signal transduction histidine kinase 129 2e-27 Q7NSH6.1 Q7NSH6_CHRVO Probable chemotaxis protein CheA EC=2.7.3.- 120 8e-25 B8CKZ9.1 B8CKZ9_SHEPW CheW-like protein:ATP-binding region, ATPa... 117 4e-24 A8H2C1.1 A8H2C1_SHEPA CheA signal transduction histidine kinase 117 8e-24 Q6LTM3.1 Q6LTM3_PHOPR Putative chemotaxis protein CheA 116 9e-24 >D8J0M4.1 D8J0M4_HERSS Chemotaxis CheA protein EC=2.7.3.- Length = 638 Score = 290 bits (741), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 131/131 (100%), Positives = 131/131 (100%) Query: 1 MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60 MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV Sbjct: 1 MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60 Query: 61 SACHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKD 120 SACHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKD Sbjct: 61 SACHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKD 120 Query: 121 ILTQAIEGKSE 131 ILTQAIEGKSE Sbjct: 121 ILTQAIEGKSE 131 >A6SWX8.1 A6SWX8_JANMA CheA chemotaxis protein EC=2.7.3.- Length = 615 Score = 240 bits (613), Expect = 4e-61, Method: Compositional matrix adjust. Identities = 114/148 (77%), Positives = 126/148 (85%), Gaps = 3/148 (2%) Query: 1 MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60 MDD MLKDFVVEAL+LATNVEEHLLTLER+P DL LNAVFR+FHTIKGGAGF+NLPAMV Sbjct: 1 MDD-MLKDFVVEALDLATNVEEHLLTLERNPGDLNTLNAVFRSFHTIKGGAGFMNLPAMV 59 Query: 61 SACHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKD 120 SACHLTENLFDALRTG+ PVTP+AIEAALQASGFVADQL+EL+NGA P+SL++MP L+D Sbjct: 60 SACHLTENLFDALRTGQVPVTPIAIEAALQASGFVADQLDELANGAQPESLSAMPSSLED 119 Query: 121 ILTQAIEGKSE--APAAAAPAAAPAPAA 146 IL AI G SE AP AAAP A Sbjct: 120 ILNSAIAGTSETSAPVVETVAAAPTTAV 147 >F1W3S9.1 F1W3S9_9BURK Signal transduction histidine kinase CheA Length = 605 Score = 235 bits (599), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 109/132 (82%), Positives = 122/132 (92%), Gaps = 1/132 (0%) Query: 1 MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60 M+D MLKDFV+EALELATNVEEHLLTLER P+D E LNAVFR+FHTIKGGAGF++LPAMV Sbjct: 1 MED-MLKDFVIEALELATNVEEHLLTLERRPNDKETLNAVFRSFHTIKGGAGFMSLPAMV 59 Query: 61 SACHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKD 120 SACHLTENLFDALRTG APVTPLAIEAALQASGFVADQL EL+NGA P+SL++MP L++ Sbjct: 60 SACHLTENLFDALRTGAAPVTPLAIEAALQASGFVADQLTELANGARPESLSAMPAALEN 119 Query: 121 ILTQAIEGKSEA 132 ILTQAIEGK+ A Sbjct: 120 ILTQAIEGKAVA 131 >A4G3P8.1 A4G3P8_HERAR Putative chemotaxis protein CheA Length = 609 Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 104/128 (81%), Positives = 117/128 (91%) Query: 3 DEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSA 62 D+MLKDFVVEALELATNVEEHLL+LER+P DL LNAVFR+FHTIKGGAGF+NLPAMVSA Sbjct: 2 DDMLKDFVVEALELATNVEEHLLSLERNPGDLNTLNAVFRSFHTIKGGAGFMNLPAMVSA 61 Query: 63 CHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKDIL 122 CHLTENLFDALRTG+ PVTP+AIEAALQASGFVADQL EL+NGAAP+SL++MP L+ IL Sbjct: 62 CHLTENLFDALRTGQVPVTPIAIEAALQASGFVADQLTELANGAAPESLSAMPDALEQIL 121 Query: 123 TQAIEGKS 130 AI+GK Sbjct: 122 NSAIDGKD 129 >Q21IQ8.1 Q21IQ8_SACD2 ATP-binding region, ATPase-like protein Length = 767 Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 74/164 (45%), Positives = 97/164 (59%), Gaps = 23/164 (14%) Query: 2 DDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVS 61 D+E+L+DF+VEA E+ + E L+ LE+ PDD E+LNA+FR FHT+KGGAGF+ L AMV Sbjct: 6 DEEILQDFLVEAGEILEQLSEQLVDLEQRPDDKELLNAIFRGFHTVKGGAGFLQLNAMVD 65 Query: 62 ACHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNG-----AAPDSLASMPG 116 CH TENLFD LR GK V+ ++ LQA V +Q +E+ N A+P+ +A+ Sbjct: 66 CCHATENLFDMLRNGKRVVSSELMDVVLQALDLVNEQFDEVKNRQEITPASPELIAA--- 122 Query: 117 ELKDILTQAIEGKSEAPAAAAPAAAP--------APAAPEPERA 152 L I G E PA AA AAP PA EP+ A Sbjct: 123 -----LEALING--ETPAGAADVAAPEQPDEVAVEPATQEPDNA 159 >Q0A9Z6.1 Q0A9Z6_ALHEH CheA signal transduction histidine kinase Length = 734 Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 75/182 (41%), Positives = 106/182 (58%), Gaps = 14/182 (7%) Query: 1 MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60 ++D++++DF+VE+ E+ N+ E L+ LE+ PDD ++LNAVFR FHTIKGGAGF+NL +V Sbjct: 5 IEDDIVQDFLVESREILDNLGEQLVDLEQRPDDKDLLNAVFRGFHTIKGGAGFLNLDPLV 64 Query: 61 SACHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNG-----AAPDSLASMP 115 CH TE++F+ LR G+ VTP ++ LQA V +Q N + NG AAP+ L + Sbjct: 65 DVCHRTEDVFNLLRNGERTVTPELMDTVLQALDVVVNQFNSIENGEDPQPAAPELLRDLE 124 Query: 116 G-ELKDILTQAIEGKSEAPAAAAPAAAPAPAAPEPE------RAPARLPAL-PQRPPWTA 167 + D +G EA + A PA AA EPE A L AL ++ A Sbjct: 125 ALNITDEQRLGTDG-DEAASTATPAGDEPAAAGEPEGDISDREFEALLDALEEEKGEGDA 183 Query: 168 AP 169 AP Sbjct: 184 AP 185 >Q7NSH6.1 Q7NSH6_CHRVO Probable chemotaxis protein CheA EC=2.7.3.- Length = 633 Score = 120 bits (300), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 50/106 (47%), Positives = 73/106 (68%) Query: 3 DEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMVSA 62 +E+L+DF++E+ +L ++V+ L+ LE+ P+D +LN +FR FHTIKGGAGF+N+ MV+ Sbjct: 8 EELLQDFLMESTDLLSDVDNKLVELEKRPEDKALLNDIFRGFHTIKGGAGFLNVIPMVNL 67 Query: 63 CHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAP 108 CH TENLFD LR G+ +TP ++ L A+G V D L G P Sbjct: 68 CHRTENLFDKLRNGEMHITPEVMDVILDATGIVRDMFGTLGQGLMP 113 >B8CKZ9.1 B8CKZ9_SHEPW CheW-like protein:ATP-binding region, ATPase-like:Signal transducing histidine kinase, homodimeric:Hpt Length = 728 Score = 117 bits (294), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 66/162 (40%), Positives = 92/162 (56%), Gaps = 16/162 (9%) Query: 1 MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60 +D+E+L+DF++EA E+ ++E L+TLE +PDD ++LNA+FR FHT+KGGAGF++L MV Sbjct: 5 VDEEILQDFLIEAGEILELLQEQLVTLENNPDDTDLLNAIFRGFHTVKGGAGFLSLTPMV 64 Query: 61 SACHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNG-----AAPDSLAS-- 113 CH EN FD LRTGK V+ ++ LQA + E G A PD LA Sbjct: 65 DVCHEAENTFDLLRTGKRDVSANLMDVILQAVDAINSMFAETQAGQPQSPADPDLLAQLK 124 Query: 114 -------MPGELKDILTQAIEGKSEAPAAAAPAAAPAPAAPE 148 +P E+ D TQA + E+ A A P P+ Sbjct: 125 TLSAGQLLPSEMAD--TQASVAEVESIAVVEEATVVEPIVPQ 164 >A8H2C1.1 A8H2C1_SHEPA CheA signal transduction histidine kinase Length = 741 Score = 117 bits (292), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 60/134 (44%), Positives = 83/134 (61%), Gaps = 23/134 (17%) Query: 1 MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60 +D+E+L+DF++EA E+ ++E L+TLE +PDD E+LNA+FR FHT+KGGAGF+ L MV Sbjct: 5 VDEEILQDFLIEAGEILELLQEQLVTLENNPDDTELLNAIFRGFHTVKGGAGFLGLSPMV 64 Query: 61 SACHLTENLFDALRTGKAPVTPLAIEAALQASGFVADQLNELSNGAAPDSLASMPGELKD 120 CH EN FD LRTGK V+ ++ LQ A DS+ SM E Sbjct: 65 DVCHEAENTFDLLRTGKREVSANLMDVILQ----------------AVDSINSMFAE--- 105 Query: 121 ILTQAIEGKSEAPA 134 TQA G++++PA Sbjct: 106 --TQA--GQTQSPA 115 >Q6LTM3.1 Q6LTM3_PHOPR Putative chemotaxis protein CheA Length = 746 Score = 116 bits (291), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 47/91 (51%), Positives = 70/91 (76%) Query: 1 MDDEMLKDFVVEALELATNVEEHLLTLERHPDDLEILNAVFRAFHTIKGGAGFVNLPAMV 60 +D+++L+DF++EA E+ + E L+ LER+PDD ++LNA+FR FHT+KGGAGF++L +V Sbjct: 5 LDEDILQDFLIEAGEILELLSEQLVELERNPDDSDLLNAIFRGFHTVKGGAGFLSLAELV 64 Query: 61 SACHLTENLFDALRTGKAPVTPLAIEAALQA 91 ACH EN+FD LRTGK +TP ++ L+A Sbjct: 65 DACHGAENVFDLLRTGKRKITPELMDVILEA 95