BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0136.p (204 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IXH7.1 D8IXH7_HERSS ATP-dependent Clp protease proteolytic sub... 416 e-114 A2RPP4.1 A2RPP4_HERSE ATP-dependent Clp protease proteolytic sub... 416 e-114 A4G5X1.1 A4G5X1_HERAR ATP-dependent Clp protease proteolytic sub... 382 e-104 A6SY74.1 CLPP_JANMA ATP-dependent Clp protease proteolytic subun... 381 e-104 F1W0G3.1 F1W0G3_9BURK ATP-dependent Clp protease proteolytic sub... 367 e-100 C3X7Q8.1 C3X7Q8_OXAFO ATP-dependent Clp protease proteolytic sub... 361 4e-98 C3X1E7.1 C3X1E7_OXAFO ATP-dependent Clp protease proteolytic sub... 360 4e-98 D8NBT7.1 D8NBT7_RALSO ATP-dependent Clp protease proteolytic sub... 355 3e-96 B5SKD2.1 B5SKD2_RALSO ATP-dependent Clp protease proteolytic sub... 355 3e-96 B5S3A1.1 B5S3A1_RALSO ATP-dependent Clp protease proteolytic sub... 355 3e-96 >D8IXH7.1 D8IXH7_HERSS ATP-dependent Clp protease proteolytic subunit EC=3.4.21.92 Length = 208 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/204 (100%), Positives = 204/204 (100%) Query: 1 MKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLF 60 MKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLF Sbjct: 5 MKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLF 64 Query: 61 LESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKG 120 LESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKG Sbjct: 65 LESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKG 124 Query: 121 KRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTD 180 KRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTD Sbjct: 125 KRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTD 184 Query: 181 RDNFMSADAAAEYGLIDKVLTERG 204 RDNFMSADAAAEYGLIDKVLTERG Sbjct: 185 RDNFMSADAAAEYGLIDKVLTERG 208 >A2RPP4.1 A2RPP4_HERSE ATP-dependent Clp protease proteolytic subunit EC=3.4.21.92 Length = 208 Score = 416 bits (1068), Expect = e-114, Method: Compositional matrix adjust. Identities = 204/204 (100%), Positives = 204/204 (100%) Query: 1 MKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLF 60 MKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLF Sbjct: 5 MKQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLF 64 Query: 61 LESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKG 120 LESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKG Sbjct: 65 LESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKG 124 Query: 121 KRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTD 180 KRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTD Sbjct: 125 KRFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTD 184 Query: 181 RDNFMSADAAAEYGLIDKVLTERG 204 RDNFMSADAAAEYGLIDKVLTERG Sbjct: 185 RDNFMSADAAAEYGLIDKVLTERG 208 >A4G5X1.1 A4G5X1_HERAR ATP-dependent Clp protease proteolytic subunit EC=3.4.21.92 Length = 209 Score = 382 bits (981), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/202 (91%), Positives = 193/202 (95%) Query: 2 KQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFL 61 + SALDT MLGMVPMVIEQSGRGERAYDIYSRLLKER+IFLVGPVND ANLIVAQLLFL Sbjct: 7 RTSALDTDMLGMVPMVIEQSGRGERAYDIYSRLLKERVIFLVGPVNDHAANLIVAQLLFL 66 Query: 62 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGK 121 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKP VSTLCTGLAASMGAFLLAAG KGK Sbjct: 67 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGK 126 Query: 122 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDR 181 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLN ILA++TG+T+E+IS+DTDR Sbjct: 127 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNQILADRTGKTLEEISRDTDR 186 Query: 182 DNFMSADAAAEYGLIDKVLTER 203 DNFMSADAA EYG+IDKVLT R Sbjct: 187 DNFMSADAAVEYGMIDKVLTTR 208 >A6SY74.1 CLPP_JANMA ATP-dependent Clp protease proteolytic subunit EC=3.4.21.92 Length = 210 Score = 381 bits (978), Expect = e-104, Method: Compositional matrix adjust. Identities = 184/202 (91%), Positives = 192/202 (95%) Query: 2 KQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFL 61 + SALDT MLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVND MANLIVAQLLFL Sbjct: 8 RTSALDTDMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDQMANLIVAQLLFL 67 Query: 62 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGK 121 ESENPDKDISLYINSPGGSVSAGMAI+DTMQFIKP VSTLCTGLAASMGAFLLAAG KGK Sbjct: 68 ESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPNVSTLCTGLAASMGAFLLAAGEKGK 127 Query: 122 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDR 181 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLN ILAE+TG++VE+I+KDTDR Sbjct: 128 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNAILAERTGKSVEEIAKDTDR 187 Query: 182 DNFMSADAAAEYGLIDKVLTER 203 DNFMSADAA YG+IDKVL R Sbjct: 188 DNFMSADAAVTYGMIDKVLATR 209 >F1W0G3.1 F1W0G3_9BURK ATP-dependent Clp protease proteolytic subunit Length = 206 Score = 367 bits (941), Expect = e-100, Method: Compositional matrix adjust. Identities = 175/202 (86%), Positives = 191/202 (94%) Query: 2 KQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFL 61 + A++ QMLGM+PMVIEQSGRGER+YDIYSRLLKER+IFLVGPVND +ANLIVAQLLFL Sbjct: 4 RNFAMEPQMLGMIPMVIEQSGRGERSYDIYSRLLKERVIFLVGPVNDGVANLIVAQLLFL 63 Query: 62 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGK 121 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKP VSTLCTGLAASMGAFLLAAGAKGK Sbjct: 64 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPNVSTLCTGLAASMGAFLLAAGAKGK 123 Query: 122 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDR 181 RFSLPNSRIMIHQP GGAQGQA+DIEIQA+EILYLRERLN ILA+KTGRT+E+I +DT+R Sbjct: 124 RFSLPNSRIMIHQPSGGAQGQATDIEIQAKEILYLRERLNGILADKTGRTIEEIRRDTER 183 Query: 182 DNFMSADAAAEYGLIDKVLTER 203 DNFMSAD A +YG+IDKVLT R Sbjct: 184 DNFMSADEAEKYGMIDKVLTTR 205 >C3X7Q8.1 C3X7Q8_OXAFO ATP-dependent Clp protease proteolytic subunit EC=3.4.21.92 Length = 207 Score = 361 bits (926), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 172/202 (85%), Positives = 190/202 (94%) Query: 2 KQSALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFL 61 + SALDT+MLGM+PMVIEQSGRGERAYDIYSRLLKERI+FLVGPV D ANLIVAQLLFL Sbjct: 5 RDSALDTRMLGMIPMVIEQSGRGERAYDIYSRLLKERIVFLVGPVMDQNANLIVAQLLFL 64 Query: 62 ESENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGK 121 ESENPDKDISLYINSPGGSVSAGMAI+DTMQFIKPQVSTLCTGLAASMGAFLLAAG KGK Sbjct: 65 ESENPDKDISLYINSPGGSVSAGMAIYDTMQFIKPQVSTLCTGLAASMGAFLLAAGEKGK 124 Query: 122 RFSLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDR 181 RFSLPNSRIMIHQP GGAQGQA+DIEI AREILYLRERLN ILA+ TG+++EQ+++DT+R Sbjct: 125 RFSLPNSRIMIHQPSGGAQGQATDIEIHAREILYLRERLNGILADNTGKSIEQVARDTER 184 Query: 182 DNFMSADAAAEYGLIDKVLTER 203 DNFMSA+ A +YGLID VL++R Sbjct: 185 DNFMSANEAKDYGLIDDVLSKR 206 >C3X1E7.1 C3X1E7_OXAFO ATP-dependent Clp protease proteolytic subunit EC=3.4.21.92 Length = 207 Score = 360 bits (925), Expect = 4e-98, Method: Compositional matrix adjust. Identities = 175/200 (87%), Positives = 187/200 (93%) Query: 4 SALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLES 63 SALDT MLGM+PMVIEQSGRGERA+DIYSRLLKERIIFLVGPV D ANLIVAQLLFLES Sbjct: 7 SALDTSMLGMIPMVIEQSGRGERAFDIYSRLLKERIIFLVGPVTDQNANLIVAQLLFLES 66 Query: 64 ENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRF 123 ENP+KDISLYINSPGGSVSAGMAI+DTMQFI+PQVSTLCTGLAASMGAFLLAAGAKGKRF Sbjct: 67 ENPEKDISLYINSPGGSVSAGMAIYDTMQFIRPQVSTLCTGLAASMGAFLLAAGAKGKRF 126 Query: 124 SLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDN 183 SLPNSRIMIHQP GGAQGQA+DIEI AREILYLRERLN ILAE TG+ VEQI++DT+RDN Sbjct: 127 SLPNSRIMIHQPSGGAQGQATDIEIHAREILYLRERLNGILAENTGKPVEQIARDTERDN 186 Query: 184 FMSADAAAEYGLIDKVLTER 203 FMSA A +YGLID+VLT R Sbjct: 187 FMSAAEAKDYGLIDEVLTRR 206 >D8NBT7.1 D8NBT7_RALSO ATP-dependent Clp protease proteolytic subunit 2 EC=3.4.21.92 Length = 217 Score = 355 bits (910), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/201 (83%), Positives = 188/201 (93%) Query: 4 SALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLES 63 SAL+TQ LG+VPMV+EQSGRGERAYDIYSRLLKER+IF+VG VND ANL+VAQLLFLES Sbjct: 16 SALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLES 75 Query: 64 ENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRF 123 ENPDKDISLYINSPGGSVSAG+A++DTMQF+KP VSTLC G+AASMGAFLLAAGAKGKR+ Sbjct: 76 ENPDKDISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRY 135 Query: 124 SLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDN 183 +LPNSRIMIHQPLGGA+GQASDIEIQAREILYLRERLNTIL+E TG+ V++I++DTDRDN Sbjct: 136 ALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVDKIARDTDRDN 195 Query: 184 FMSADAAAEYGLIDKVLTERG 204 FMS D A EYGLIDKVL RG Sbjct: 196 FMSGDQAKEYGLIDKVLARRG 216 >B5SKD2.1 B5SKD2_RALSO ATP-dependent Clp protease proteolytic subunit EC=3.4.21.92 Length = 217 Score = 355 bits (910), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/201 (83%), Positives = 188/201 (93%) Query: 4 SALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLES 63 SAL+TQ LG+VPMV+EQSGRGERAYDIYSRLLKER+IF+VG VND ANL+VAQLLFLES Sbjct: 16 SALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLES 75 Query: 64 ENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRF 123 ENPDKDISLYINSPGGSVSAG+A++DTMQF+KP VSTLC G+AASMGAFLLAAGAKGKR+ Sbjct: 76 ENPDKDISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRY 135 Query: 124 SLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDN 183 +LPNSRIMIHQPLGGA+GQASDIEIQAREILYLRERLNTIL+E TG+ V++I++DTDRDN Sbjct: 136 ALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVDKIARDTDRDN 195 Query: 184 FMSADAAAEYGLIDKVLTERG 204 FMS D A EYGLIDKVL RG Sbjct: 196 FMSGDQAKEYGLIDKVLARRG 216 >B5S3A1.1 B5S3A1_RALSO ATP-dependent Clp protease proteolytic subunit EC=3.4.21.92 Length = 217 Score = 355 bits (910), Expect = 3e-96, Method: Compositional matrix adjust. Identities = 168/201 (83%), Positives = 188/201 (93%) Query: 4 SALDTQMLGMVPMVIEQSGRGERAYDIYSRLLKERIIFLVGPVNDAMANLIVAQLLFLES 63 SAL+TQ LG+VPMV+EQSGRGERAYDIYSRLLKER+IF+VG VND ANL+VAQLLFLES Sbjct: 16 SALETQGLGLVPMVVEQSGRGERAYDIYSRLLKERVIFMVGEVNDQTANLVVAQLLFLES 75 Query: 64 ENPDKDISLYINSPGGSVSAGMAIFDTMQFIKPQVSTLCTGLAASMGAFLLAAGAKGKRF 123 ENPDKDISLYINSPGGSVSAG+A++DTMQF+KP VSTLC G+AASMGAFLLAAGAKGKR+ Sbjct: 76 ENPDKDISLYINSPGGSVSAGLAMYDTMQFVKPDVSTLCMGMAASMGAFLLAAGAKGKRY 135 Query: 124 SLPNSRIMIHQPLGGAQGQASDIEIQAREILYLRERLNTILAEKTGRTVEQISKDTDRDN 183 +LPNSRIMIHQPLGGA+GQASDIEIQAREILYLRERLNTIL+E TG+ V++I++DTDRDN Sbjct: 136 ALPNSRIMIHQPLGGARGQASDIEIQAREILYLRERLNTILSEVTGQPVDKIARDTDRDN 195 Query: 184 FMSADAAAEYGLIDKVLTERG 204 FMS D A EYGLIDKVL RG Sbjct: 196 FMSGDQAKEYGLIDKVLARRG 216