BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0121.p (182 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IXJ1.1 D8IXJ1_HERSS Response regulator consisting of a CheY-li... 363 4e-99 C6BI56.1 C6BI56_RALP1 Two component transcriptional regulator, F... 238 2e-61 B2U7X6.1 B2U7X6_RALPJ Two component transcriptional regulator, F... 238 2e-61 E2SWN1.1 E2SWN1_9RALS Response regulator 238 2e-61 Q0KF67.1 Q0KF67_CUPNH Response regulator containing a Fis-type D... 237 6e-61 B5S7B9.1 B5S7B9_RALSO Response regulator protein 235 2e-60 A3RT75.1 A3RT75_RALSO PrrA 235 2e-60 D8P185.1 D8P185_RALSO Putative response regulator/transcriptiona... 235 2e-60 Q8Y3E0.1 Q8Y3E0_RALSO Putative response regulator/transcriptiona... 234 3e-60 B2AGB9.1 B2AGB9_CUPTR Putative response regulator, RegA/PrrA/Act... 234 3e-60 >D8IXJ1.1 D8IXJ1_HERSS Response regulator consisting of a CheY-like receiver domain and a Fis-type HTH domain, protein Length = 182 Score = 363 bits (933), Expect = 4e-99, Method: Compositional matrix adjust. Identities = 181/182 (99%), Positives = 182/182 (100%) Query: 1 MSAAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDS 60 MSAAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDS Sbjct: 1 MSAAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEKDS 60 Query: 61 GLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGDG 120 GLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSG+G Sbjct: 61 GLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSALSHSGNG 120 Query: 121 EQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 EQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV Sbjct: 121 EQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRKLAKRPV 180 Query: 181 AR 182 AR Sbjct: 181 AR 182 >C6BI56.1 C6BI56_RALP1 Two component transcriptional regulator, Fis family Length = 192 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 142/191 (74%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ RF Y T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALALARQTRFSYVTVDLHLAASDKG 64 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+L+LTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLILTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 125 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >B2U7X6.1 B2U7X6_RALPJ Two component transcriptional regulator, Fis family Length = 192 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 142/191 (74%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ RF Y T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALALARQTRFSYVTVDLHLAASDKG 64 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+L+LTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLILTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 125 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >E2SWN1.1 E2SWN1_9RALS Response regulator Length = 192 Score = 238 bits (608), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 142/191 (74%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ RF Y T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALALARQTRFSYVTVDLHLAASDKG 64 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+L+LTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLILTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 125 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >Q0KF67.1 Q0KF67_CUPNH Response regulator containing a Fis-type DNA-binding domain Length = 203 Score = 237 bits (604), Expect = 6e-61, Method: Compositional matrix adjust. Identities = 125/188 (66%), Positives = 143/188 (76%), Gaps = 13/188 (6%) Query: 5 FLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEK------ 58 FL++DD++VFAGTLAR+L RRG+ VAH G AL A R F Y T+DL LE Sbjct: 19 FLVIDDDEVFAGTLARALTRRGYAVQVAHDGRTALALASRIEFAYVTLDLHLEPPPDAGS 78 Query: 59 ----DSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSAL 114 +SGLQ VSPLRQALP AR+L+LTGYASIAT V A+K GAD YLAKPANVDSIL+AL Sbjct: 79 TVPAESGLQLVSPLRQALPDARILILTGYASIATAVAAVKQGADEYLAKPANVDSILTAL 138 Query: 115 SHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRK 174 +G E AA+ L EE PLS+ RLEWEHIQRVLAEH+GNIS+TARALNMHRRTLQRK Sbjct: 139 -MAGVSEDAAQAAL--EEPVPLSVARLEWEHIQRVLAEHDGNISATARALNMHRRTLQRK 195 Query: 175 LAKRPVAR 182 L KRPV+R Sbjct: 196 LGKRPVSR 203 >B5S7B9.1 B5S7B9_RALSO Response regulator protein Length = 192 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 141/191 (73%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ F Y T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQAPFAYVTVDLHLAASDRG 64 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LTPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 125 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >A3RT75.1 A3RT75_RALSO PrrA Length = 192 Score = 235 bits (600), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 141/191 (73%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ F Y T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQAPFAYVTVDLHLAASDRG 64 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LTPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 125 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >D8P185.1 D8P185_RALSO Putative response regulator/transcriptional regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) Length = 204 Score = 235 bits (599), Expect = 2e-60, Method: Compositional matrix adjust. Identities = 126/191 (65%), Positives = 141/191 (73%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ F Y T+DL L Sbjct: 17 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQMPFAYVTVDLHLAASDRG 76 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 77 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 136 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTL Sbjct: 137 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTL 193 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 194 QRKLGKRPVAK 204 >Q8Y3E0.1 Q8Y3E0_RALSO Putative response regulator/transcriptional regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) Length = 192 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 125/191 (65%), Positives = 141/191 (73%), Gaps = 14/191 (7%) Query: 3 AAFLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLE----- 57 A FLILDD+DVFA TLAR+L RRGF +AH+G AL AR+ F Y T+DL L Sbjct: 5 APFLILDDDDVFAQTLARALTRRGFAPQIAHTGGEALSLARQTPFAYVTVDLHLAASDRG 64 Query: 58 ------KDSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSIL 111 DSGL W++PLRQALP AR+LVLTGYASIAT VQA+K GAD YLAKPANVDSIL Sbjct: 65 LMPHGGTDSGLHWIAPLRQALPEARMLVLTGYASIATAVQAVKLGADEYLAKPANVDSIL 124 Query: 112 SALSHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTL 171 AL G E AE + E +PLS+ RLEWEHIQRVL+EH GNIS+TARALNMHRRTL Sbjct: 125 LAL-QVGVSEAVAEQTM--ENPAPLSVARLEWEHIQRVLSEHGGNISATARALNMHRRTL 181 Query: 172 QRKLAKRPVAR 182 QRKL KRPVA+ Sbjct: 182 QRKLGKRPVAK 192 >B2AGB9.1 B2AGB9_CUPTR Putative response regulator, RegA/PrrA/ActR family (CheY-like receiver domain + Fis-type HTH domain) Length = 203 Score = 234 bits (598), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 124/188 (65%), Positives = 142/188 (75%), Gaps = 13/188 (6%) Query: 5 FLILDDNDVFAGTLARSLARRGFRATVAHSGEAALEAARRERFDYATIDLQLEK------ 58 FL++DD++VFAGTLAR+L RRG+ VAH G AL A R F Y T+DL LE Sbjct: 19 FLVIDDDEVFAGTLARALTRRGYAVAVAHDGRTALALAARTDFAYVTLDLHLEPPPEAGS 78 Query: 59 ----DSGLQWVSPLRQALPHARLLVLTGYASIATTVQAIKSGADNYLAKPANVDSILSAL 114 +SGLQ V+PLRQALP AR+L+LTGYASIAT V A+K GAD YLAKPANVDSIL+AL Sbjct: 79 TAPAESGLQLVAPLRQALPDARILILTGYASIATAVAAVKQGADEYLAKPANVDSILTAL 138 Query: 115 SHSGDGEQAAETPLPVEEASPLSLERLEWEHIQRVLAEHEGNISSTARALNMHRRTLQRK 174 +G E AA+ L EE PLS+ RLEWEHIQRVLAEH GNIS+TARALNMHRRTLQRK Sbjct: 139 -MAGVSEDAAQAAL--EEPVPLSVARLEWEHIQRVLAEHGGNISATARALNMHRRTLQRK 195 Query: 175 LAKRPVAR 182 L KRPV+R Sbjct: 196 LGKRPVSR 203