BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0001.0119.p (230 letters) Database: pfamseq 15,929,002 sequences; 5,169,768,107 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value D8IXJ2.1 D8IXJ2_HERSS Transmembrane sensor histidine kinase tran... 387 e-106 Q8Y3E1.1 Q8Y3E1_RALSO Probable transmembrane sensor histidine ki... 162 4e-38 D8NRN4.1 D8NRN4_RALSO Putative sensor histidine kinase EC=2.7.13.3 161 8e-38 B5S7B8.1 B5S7B8_RALSO Transmembrane sensor histidine kinase prot... 161 8e-38 D8P186.1 D8P186_RALSO Putative sensor histidine kinase EC=2.7.13.3 160 1e-37 B5SDT0.1 B5SDT0_RALSO Transmembrane sensor histidine kinase prot... 160 1e-37 A3RT74.1 A3RT74_RALSO Sensory transduction protein kinase EC=2.7... 160 1e-37 Q476X8.1 Q476X8_CUPPJ ATP-binding region, ATPase-like:Histidine ... 159 2e-37 C6BI57.1 C6BI57_RALP1 Histidine kinase 159 2e-37 D8NAE3.1 D8NAE3_RALSO Putative sensor histidine kinase EC=2.7.13.3 159 3e-37 >D8IXJ2.1 D8IXJ2_HERSS Transmembrane sensor histidine kinase transcription regulator protein EC=2.7.3.- Length = 443 Score = 387 bits (993), Expect = e-106, Method: Compositional matrix adjust. Identities = 197/198 (99%), Positives = 197/198 (99%) Query: 1 MFSSPRPRSPASPFPTQHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIG 60 MFSSPR RSPASPFPTQHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIG Sbjct: 1 MFSSPRLRSPASPFPTQHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIG 60 Query: 61 LQALLNGATWLRLRWTRPAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAG 120 LQALLNGATWLRLRWTRPAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAG Sbjct: 61 LQALLNGATWLRLRWTRPAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAG 120 Query: 121 AASLAWPYALLLALCALGAYSGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWF 180 AASLAWPYALLLALCALGAYSGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWF Sbjct: 121 AASLAWPYALLLALCALGAYSGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWF 180 Query: 181 VSRIAAAVRSRETELARA 198 VSRIAAAVRSRETELARA Sbjct: 181 VSRIAAAVRSRETELARA 198 >Q8Y3E1.1 Q8Y3E1_RALSO Probable transmembrane sensor histidine kinase transcription regulator protein EC=2.7.3.- Length = 448 Score = 162 bits (409), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 122/178 (68%) Query: 21 LSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRWTRPAE 80 L RLFWLRW+++A +L+++ A + LPV LL+++G+ AL N T ++R RP Sbjct: 17 LRRLFWLRWSLLATQLILMLLAPLIFGVQLPVAVLLSVMGVHALFNLLTGWQVRRDRPVR 76 Query: 81 QRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALCALGAY 140 E+ +QLL+DL L+ALLYF+GG+TNPFVSFYLPALA AA L + + L L AL AY Sbjct: 77 HIEITVQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPIAHVVGLTLYALAAY 136 Query: 141 SGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETELARA 198 S ++ Y PL + DQ A+ YHLAGMWI+F S+ +I F +R++AA+R RE ELA A Sbjct: 137 SVMLGNYIPLDLLDQADAVPYHLAGMWIDFVASSAMIAGFTARLSAALREREAELADA 194 >D8NRN4.1 D8NRN4_RALSO Putative sensor histidine kinase EC=2.7.13.3 Length = 448 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 122/178 (68%) Query: 21 LSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRWTRPAE 80 L RLFWLRW ++A +L+++ A + LPV LL+++GL A+ N T R+R RP Sbjct: 17 LRRLFWLRWILLATQLILMLLAPLIFGVQLPVAPLLSVMGLHAVFNLLTGWRVRRDRPIR 76 Query: 81 QRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALCALGAY 140 E+ QLL+DL L+ALLYF+GG+TNPFVSFYLPALA AA L + + L L AL AY Sbjct: 77 HIEITAQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPLAHVVGLTLYALAAY 136 Query: 141 SGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETELARA 198 S ++ Y P+++ +Q A+AYHLAGMWI+F S+ +I F +R++AA+R RE ELA A Sbjct: 137 SMMLGNYIPMNLLNQADAVAYHLAGMWIDFVASSAMIAGFTARLSAALREREAELADA 194 >B5S7B8.1 B5S7B8_RALSO Transmembrane sensor histidine kinase protein EC=2.7.3.- Length = 451 Score = 161 bits (407), Expect = 8e-38, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 122/178 (68%) Query: 21 LSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRWTRPAE 80 L RLFWLRW ++A +L+++ A + LPV LL+++GL A+ N T R+R RP Sbjct: 20 LRRLFWLRWILLATQLILMLLAPLIFGVQLPVVPLLSVMGLHAVFNLLTGWRVRRDRPIR 79 Query: 81 QRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALCALGAY 140 E+ QLL+DL L+ALLYF+GG+TNPFVSFYLPALA AA L + + L L AL AY Sbjct: 80 HIEITAQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPLAHVVGLTLYALAAY 139 Query: 141 SGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETELARA 198 S ++ Y P+++ +Q A+AYHLAGMWI+F S+ +I F +R++AA+R RE ELA A Sbjct: 140 SMMLGNYIPMNLLNQADAVAYHLAGMWIDFVASSAMIAGFTARLSAALREREAELADA 197 >D8P186.1 D8P186_RALSO Putative sensor histidine kinase EC=2.7.13.3 Length = 448 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 122/178 (68%) Query: 21 LSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRWTRPAE 80 L RLFWLRW ++A +L+++ A + LPV LL+++GL A+ N T R+R RP Sbjct: 17 LRRLFWLRWILLATQLILMLLAPLIFGVQLPVVPLLSVMGLHAVFNLLTGWRVRRDRPVR 76 Query: 81 QRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALCALGAY 140 E+ +QLL+DL L+ALLYF+GG+TNPFVSFYLPALA AA L + + L L AL AY Sbjct: 77 HIEITVQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPIAHVVGLTLYALAAY 136 Query: 141 SGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETELARA 198 S ++ Y PL++ +Q A+ YHLAGMWI+F S+ +I F +R++AA+R RE ELA A Sbjct: 137 SMMLGNYIPLNLLNQADAVPYHLAGMWIDFVASSAMIAGFTARLSAALREREAELADA 194 >B5SDT0.1 B5SDT0_RALSO Transmembrane sensor histidine kinase protein EC=2.7.3.- Length = 451 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 122/178 (68%) Query: 21 LSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRWTRPAE 80 L RLFWLRW ++A +L+++ A + LPV LL+++GL A+ N T R+R RP Sbjct: 20 LRRLFWLRWILLATQLILMLLAPLIFGVQLPVVPLLSVMGLHAVFNLLTGWRVRRDRPIR 79 Query: 81 QRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALCALGAY 140 E+ QLL+DL L+ALLYF+GG+TNPFVSFYLPALA AA L + + L L AL AY Sbjct: 80 HIEITAQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPLAHVVGLTLYALAAY 139 Query: 141 SGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETELARA 198 S ++ Y P+++ +Q A+AYHLAGMWI+F S+ +I F +R++AA+R RE ELA A Sbjct: 140 SMMLGNYIPMNLLNQADAVAYHLAGMWIDFVASSAMIAGFTARLSAALREREAELADA 197 >A3RT74.1 A3RT74_RALSO Sensory transduction protein kinase EC=2.7.3.- Length = 448 Score = 160 bits (406), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 89/178 (50%), Positives = 122/178 (68%) Query: 21 LSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRWTRPAE 80 L RLFWLRW ++A +L+++ A + LPV LL+++GL A+ N T R+R RP Sbjct: 17 LRRLFWLRWILLATQLILMLLAPLIFGVQLPVVPLLSVMGLHAVFNLLTGWRVRRDRPIR 76 Query: 81 QRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALCALGAY 140 E+ QLL+DL L+ALLYF+GG+TNPFVSFYLPALA AA L + + L L AL AY Sbjct: 77 HIEITAQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPLAHVVGLTLYALAAY 136 Query: 141 SGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETELARA 198 S ++ Y P+++ +Q A+AYHLAGMWI+F S+ +I F +R++AA+R RE ELA A Sbjct: 137 SMMLGNYIPMNLLNQADAVAYHLAGMWIDFVASSAMIAGFTARLSAALREREAELADA 194 >Q476X8.1 Q476X8_CUPPJ ATP-binding region, ATPase-like:Histidine kinase A, N-terminal Length = 451 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 96/198 (48%), Positives = 125/198 (63%), Gaps = 8/198 (4%) Query: 3 SSPRPRSPASPFPTQHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQ 62 S P P PA+ V L RLFWLRWA++AG+ L L + + LP LL + LQ Sbjct: 16 SPPLPAGPAAR--PSLVSLRRLFWLRWALLAGQALCLLSCEPIIGVTLPTGPLLVVFALQ 73 Query: 63 ALLNGATWLRLRW-TR----PAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPAL 117 AL N T LRLR TR P E EL QLL+DL L+A+L+++GG+TNPFVSFYLP L Sbjct: 74 ALFNVLTGLRLRLHTRHGSLPGEA-ELMGQLLVDLTALSAILFYTGGATNPFVSFYLPGL 132 Query: 118 AAGAASLAWPYALLLALCALGAYSGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLI 177 A AA L W + LA AL Y+ L++ Y PL +HD +A+ YHLAGMW+NF SA++I Sbjct: 133 AIAAAILPWRQVIALACFALACYTVLLFEYLPLDLHDPDKAVNYHLAGMWLNFVASAVMI 192 Query: 178 TWFVSRIAAAVRSRETEL 195 FV+R++ +R RE +L Sbjct: 193 ALFVARLSGVLRQREAQL 210 >C6BI57.1 C6BI57_RALP1 Histidine kinase Length = 448 Score = 159 bits (403), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 87/178 (48%), Positives = 122/178 (68%) Query: 21 LSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRWTRPAE 80 L RLFWLRW+++A +L+++ A + LPV LL+++GL AL N T R+R RP + Sbjct: 17 LRRLFWLRWSLLATQLVLMLLAPLVFGVQLPVVPLLSVMGLHALFNLLTGWRVRRNRPVQ 76 Query: 81 QRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALCALGAY 140 E+ +QLL+DL L+ALLYF+GG+TNPFVSFYLPALA AA L + + L L AL AY Sbjct: 77 HIEITVQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPIAHVVGLTLYALAAY 136 Query: 141 SGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETELARA 198 S ++ Y PL + +Q A+AYHLAGMWI+F S+ +I F +R++AA+R + +L A Sbjct: 137 SMMLGNYIPLKLANQADALAYHLAGMWIDFVASSAMIAGFTARLSAALRESDAQLTEA 194 >D8NAE3.1 D8NAE3_RALSO Putative sensor histidine kinase EC=2.7.13.3 Length = 448 Score = 159 bits (402), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 87/178 (48%), Positives = 123/178 (69%) Query: 21 LSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRWTRPAE 80 L RLFWLRW+++A +L+++ A + LPV LL+++G+ A+ N T ++R RP Sbjct: 17 LRRLFWLRWSLLATQLILMLLAPLIFGVQLPVVVLLSVMGVHAVFNLLTGWQVRHDRPVR 76 Query: 81 QRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALCALGAY 140 E+ +QLL+DL L+ALLYF+GG+TNPFVSFYLPALA AA L + + L L AL AY Sbjct: 77 HIEITVQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPIAHVVGLTLYALAAY 136 Query: 141 SGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETELARA 198 S ++ Y PL++ +Q A+ YHLAGMWI+F S+ +I F +R++AA+R RE ELA A Sbjct: 137 SMMLGNYIPLNLLNQADAVPYHLAGMWIDFVASSAMIAGFTARLSAALREREAELADA 194